Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0007_J12
         (600 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3C7.11c |cnx1|cal1, cal1|calnexin |Schizosaccharomyces pombe...    86   3e-18
SPBP4H10.19c |||calreticulin/calnexin homolog|Schizosaccharomyce...    38   0.001
SPAC23G3.05c |||regulator of G-protein signaling |Schizosaccharo...    26   3.7  
SPAC20G8.02 |||phospholipase|Schizosaccharomyces pombe|chr 1|||M...    26   4.8  
SPAC22G7.06c |ura1||carbamoyl-phosphate synthase |Schizosaccharo...    25   6.4  
SPBC646.10c |||U3 snoRNP protein Nop56 |Schizosaccharomyces pomb...    25   6.4  
SPCC1020.02 |spc7||kinetochore protein Spc7|Schizosaccharomyces ...    25   8.5  

>SPAC3C7.11c |cnx1|cal1, cal1|calnexin |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 560

 Score = 86.2 bits (204), Expect = 3e-18
 Identities = 51/134 (38%), Positives = 72/134 (53%), Gaps = 8/134 (5%)
 Frame = +2

Query: 221 EADKGLQTSEDARFYALSRKF-KPFSNEGKPLVVQFSVKHEQDIDCGGGYLKVFDCRLDQ 397
           + + GL   ++A  +A+S +F +P +   K LVVQ+ V  E+ ++CGG YLK+       
Sbjct: 87  KGEAGLVMKDEAAHHAISYEFDEPINEPEKDLVVQYEVNPEEGLNCGGAYLKLL-AEPTH 145

Query: 398 KDMHGETPYEIMFGPDICGPGTKKVHVIFSYK-------GKNHLIKKDIRCQDDVYTHLY 556
            +M     Y IMFGPD CG    +VH IF +K        + HL  +         T+LY
Sbjct: 146 GEMSNSIDYRIMFGPDKCGV-NDRVHFIFKHKNPLTGEYSEKHLDSRPASLLKPGITNLY 204

Query: 557 TLIVKPDNTYEVLI 598
           TLIVKPD T+EV I
Sbjct: 205 TLIVKPDQTFEVRI 218


>SPBP4H10.19c |||calreticulin/calnexin homolog|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 381

 Score = 37.5 bits (83), Expect = 0.001
 Identities = 44/164 (26%), Positives = 70/164 (42%), Gaps = 7/164 (4%)
 Frame = +2

Query: 101 VFFEEKFSDD--SWESNWVYSEHPGKEFGKFKLTAGKFYNDAEADKGLQTSEDARFYAL- 271
           VF E+  S+D  +W S W       K+ G + L      +    + GL T +  + + L 
Sbjct: 32  VFSEQFTSEDITTWRSRW--RAPVNKDLGVWDLVEAPG-SHLRDEYGLITLKSNKPHILI 88

Query: 272 SRKFKPFSNEGK--PLVVQFSVKHEQDIDCGGGYLKVFDCRLDQKDMHGETPYEIMFGPD 445
           S    P + +    P+V+ F VK  +   CG  Y+ +   + + K++  E P  I FG  
Sbjct: 89  SNLENPTTRQSSSVPIVLSFQVKPTKPWTCGHAYVSLVH-QSNPKNVSKEPPSVIRFGVK 147

Query: 446 ICGPGTKKVHVIFSYKGK--NHLIKKDIRCQDDVYTHLYTLIVK 571
            CG        I SY GK   HL         +  T +YTL+++
Sbjct: 148 KCGMFDYISLSIISYDGKVSCHLYDAPPSGLVEGRTSMYTLLLQ 191


>SPAC23G3.05c |||regulator of G-protein signaling
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 343

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 17/69 (24%), Positives = 33/69 (47%)
 Frame = +2

Query: 368 LKVFDCRLDQKDMHGETPYEIMFGPDICGPGTKKVHVIFSYKGKNHLIKKDIRCQDDVYT 547
           +K+F   + +K  +  +P+E+M  P +  P             K H  + ++R  +DV T
Sbjct: 154 VKMFTQIIIEKYFNPASPHEVMLPPQLVQP---------ILDCKEHQRQDELRLFEDVET 204

Query: 548 HLYTLIVKP 574
           +L   ++KP
Sbjct: 205 YLLNFLLKP 213


>SPAC20G8.02 |||phospholipase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 757

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 14/47 (29%), Positives = 20/47 (42%)
 Frame = +2

Query: 182 KFKLTAGKFYNDAEADKGLQTSEDARFYALSRKFKPFSNEGKPLVVQ 322
           K  LT    Y++   D G+       FY +     P S   +PLVV+
Sbjct: 578 KTNLTRSLSYSEQSFDSGVSILSCQNFYNIFHPTDPISYRVEPLVVK 624


>SPAC22G7.06c |ura1||carbamoyl-phosphate synthase |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2244

 Score = 25.4 bits (53), Expect = 6.4
 Identities = 13/49 (26%), Positives = 22/49 (44%)
 Frame = -3

Query: 478  HVNLLCTRTTDIRPKHNLVGCLAMHVLLVQSTVEYLQVTASAVDVLFVL 332
            H ++    T + +P H LV  +       +  +   QVT S + VLF +
Sbjct: 1908 HPDISLNMTPNFKPSHELVQLINSSPFYRKHIISVHQVTRSDLHVLFAI 1956


>SPBC646.10c |||U3 snoRNP protein Nop56 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 497

 Score = 25.4 bits (53), Expect = 6.4
 Identities = 11/21 (52%), Positives = 15/21 (71%)
 Frame = +3

Query: 234 VYRHLKTRGSTPYRGNSSHSA 296
           ++R LKTRG+TP  G   HS+
Sbjct: 338 LFRALKTRGNTPKYGIIYHSS 358


>SPCC1020.02 |spc7||kinetochore protein Spc7|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1364

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 13/35 (37%), Positives = 19/35 (54%)
 Frame = +2

Query: 197 AGKFYNDAEADKGLQTSEDARFYALSRKFKPFSNE 301
           A  F + +E+ KGL +SE    Y+L     P SN+
Sbjct: 263 ADSFLSHSESIKGLSSSEQGTVYSLKASHDP-SNQ 296


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,577,487
Number of Sequences: 5004
Number of extensions: 54396
Number of successful extensions: 171
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 166
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 168
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 262236260
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)