Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0007_J12
(600 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_01_0971 + 8169197-8169311,8170351-8170458,8170533-8170725,817... 210 5e-55
03_06_0563 - 34738732-34738890,34738965-34739009,34739154-347392... 204 4e-53
01_06_1654 - 38924090-38924101,38924183-38924215,38924737-389248... 198 2e-51
05_06_0014 + 24854462-24854570,24854958-24855065,24855240-248554... 191 3e-49
04_03_0812 - 19922208-19922357,19922448-19922564,19922681-199227... 101 6e-22
03_06_0382 - 33530943-33530966,33531160-33531360,33535494-33537026 54 7e-08
11_06_0110 + 20212221-20214011,20214072-20214368 29 2.8
06_03_1219 - 28491185-28494415 29 2.8
03_02_0389 - 8036575-8036841,8037011-8037133,8037516-8037736,803... 28 6.6
08_02_1620 - 28288152-28288353,28288469-28288557,28288634-282888... 27 8.7
04_03_0051 + 10199702-10199839,10199869-10200642,10202481-102030... 27 8.7
>07_01_0971 +
8169197-8169311,8170351-8170458,8170533-8170725,
8170811-8171069,8171151-8171207,8171433-8171480,
8171571-8171657,8171743-8171800,8171891-8171958,
8172066-8172161,8172244-8172291,8172658-8172696,
8172782-8172868,8173136-8173147
Length = 424
Score = 210 bits (514), Expect = 5e-55
Identities = 100/169 (59%), Positives = 124/169 (73%), Gaps = 2/169 (1%)
Frame = +2
Query: 98 EVFFEEKFSDDSWESNWVYSEHPGKE--FGKFKLTAGKFYNDAEADKGLQTSEDARFYAL 271
EVFF+EKF +D WES WV SE E G++ T+GK+ D E DKG+QTSED RFYA+
Sbjct: 30 EVFFQEKF-EDGWESRWVKSEWKKDENMAGEWNHTSGKWNGDPE-DKGIQTSEDYRFYAI 87
Query: 272 SRKFKPFSNEGKPLVVQFSVKHEQDIDCGGGYLKVFDCRLDQKDMHGETPYEIMFGPDIC 451
S ++ FSN+ K LV+QFSVKHEQ +DCGGGY+K+ +DQK G+TPY IMFGPDIC
Sbjct: 88 SAEYPEFSNKDKTLVLQFSVKHEQKLDCGGGYVKLLGGDVDQKKFGGDTPYSIMFGPDIC 147
Query: 452 GPGTKKVHVIFSYKGKNHLIKKDIRCQDDVYTHLYTLIVKPDNTYEVLI 598
G TKKVH IF+ KNHLIKKD+ C+ D +H+YTLI+ PD TY +LI
Sbjct: 148 GYSTKKVHTIFTKNDKNHLIKKDVPCETDQLSHVYTLIIHPDATYTILI 196
>03_06_0563 -
34738732-34738890,34738965-34739009,34739154-34739201,
34739291-34739386,34739467-34739534,34739633-34739690,
34739783-34739869,34740004-34740051,34740360-34740416,
34740525-34740783,34740877-34741102,34741168-34741275,
34741885-34741987
Length = 453
Score = 204 bits (498), Expect = 4e-53
Identities = 104/205 (50%), Positives = 131/205 (63%), Gaps = 13/205 (6%)
Frame = +2
Query: 23 LAVN*KMKSAVXXXXXXXXXXXXNCEVFFEEKFSDDSWESNWVYSE--HPGKEFGKFKLT 196
+A+ + +AV EVFF+EKF DD WE WV SE G++ T
Sbjct: 1 MAIPRRSAAAVAAVVALASVAAVAGEVFFQEKF-DDGWEDRWVKSEWKKDDNRAGEWNHT 59
Query: 197 AGKFYNDAEADKGL-----------QTSEDARFYALSRKFKPFSNEGKPLVVQFSVKHEQ 343
+GK+Y DA+ DKG+ QTSED RFYA+S K+ FS++ K LV+QFSVKHEQ
Sbjct: 60 SGKWYGDAD-DKGMCEVTLLLCAGIQTSEDYRFYAISAKYPEFSSKDKTLVLQFSVKHEQ 118
Query: 344 DIDCGGGYLKVFDCRLDQKDMHGETPYEIMFGPDICGPGTKKVHVIFSYKGKNHLIKKDI 523
+DCGGGY+K+ +DQK GETPY IMFGPDICG TKKVH I + GKNHLIKKD+
Sbjct: 119 KLDCGGGYVKLLGGDVDQKKFGGETPYSIMFGPDICGYATKKVHAILTKNGKNHLIKKDV 178
Query: 524 RCQDDVYTHLYTLIVKPDNTYEVLI 598
C+ D TH+YTLI++PD Y +LI
Sbjct: 179 PCKTDQLTHVYTLIIRPDAKYSILI 203
>01_06_1654 -
38924090-38924101,38924183-38924215,38924737-38924829,
38924909-38924965,38925048-38925143,38925237-38925304,
38925429-38925486,38925572-38925658,38925935-38925982,
38926060-38926116,38926200-38926458,38926666-38926858,
38926991-38927098,38927849-38927957
Length = 425
Score = 198 bits (484), Expect = 2e-51
Identities = 89/169 (52%), Positives = 125/169 (73%), Gaps = 2/169 (1%)
Frame = +2
Query: 98 EVFFEEKFSDDSWESNWVYSEHPGKE--FGKFKLTAGKFYNDAEADKGLQTSEDARFYAL 271
EV FEE+F +D WES WV S+ E G FK TAG++ D + DKG+QT+ DAR +A+
Sbjct: 28 EVIFEERF-EDGWESRWVKSDWKRSEGKAGTFKHTAGRYSGDPD-DKGIQTTLDARHFAI 85
Query: 272 SRKFKPFSNEGKPLVVQFSVKHEQDIDCGGGYLKVFDCRLDQKDMHGETPYEIMFGPDIC 451
S K FSN+G+ LV+Q+S+K EQDI+CGGGY+K+ ++QK G+TPY +MFGPDIC
Sbjct: 86 SAKIPEFSNKGRTLVLQYSIKFEQDIECGGGYIKLMSGYVNQKKFSGDTPYSLMFGPDIC 145
Query: 452 GPGTKKVHVIFSYKGKNHLIKKDIRCQDDVYTHLYTLIVKPDNTYEVLI 598
G TKK+H+I SY+G+N+ IKKD++C+ D TH+YT I++PD +Y +L+
Sbjct: 146 GTQTKKLHLILSYQGQNYPIKKDLQCETDKLTHVYTFILRPDASYSILV 194
>05_06_0014 +
24854462-24854570,24854958-24855065,24855240-24855432,
24855892-24856150,24856236-24856292,24856370-24856417,
24856725-24856811,24856885-24856942,24857084-24857151,
24857279-24857374,24857483-24857539,24857906-24857952,
24858184-24858210,24858312-24858504
Length = 468
Score = 191 bits (466), Expect = 3e-49
Identities = 87/169 (51%), Positives = 120/169 (71%), Gaps = 2/169 (1%)
Frame = +2
Query: 98 EVFFEEKFSDDSWESNWVYSEHPGKE--FGKFKLTAGKFYNDAEADKGLQTSEDARFYAL 271
EV FEE+F DD W S WV S+ E G FK TAG + D + D+G+QT+ DA+ +A+
Sbjct: 28 EVIFEERFDDD-WGSRWVKSDWKKSEGKAGTFKHTAGSYSGDPD-DRGIQTTSDAKHFAI 85
Query: 272 SRKFKPFSNEGKPLVVQFSVKHEQDIDCGGGYLKVFDCRLDQKDMHGETPYEIMFGPDIC 451
S KF FSN+ + LVVQ+S+K EQDI+CGG Y+K+ ++QK G+TPY MFGPDIC
Sbjct: 86 SAKFPEFSNKNRTLVVQYSIKIEQDIECGGAYIKLMSGYVNQKKFGGDTPYSFMFGPDIC 145
Query: 452 GPGTKKVHVIFSYKGKNHLIKKDIRCQDDVYTHLYTLIVKPDNTYEVLI 598
G TKK+H+I SY+G+N+ IKKD++C+ D TH YT I++PD +Y +L+
Sbjct: 146 GDQTKKLHLILSYQGQNYPIKKDLKCETDKLTHFYTFILRPDASYSLLV 194
>04_03_0812 -
19922208-19922357,19922448-19922564,19922681-19922752,
19922864-19923993,19924939-19925008,19925125-19925199
Length = 537
Score = 101 bits (241), Expect = 6e-22
Identities = 68/174 (39%), Positives = 93/174 (53%), Gaps = 10/174 (5%)
Frame = +2
Query: 107 FEEKFSDDSWESNWVYSEHPGKEFGKFKLTAGKFYNDAEADKGLQTSEDARFYALSRKF- 283
F E F D+S+E WV S GK+ K K +D D GL SE A+ YA+ ++
Sbjct: 27 FYEPF-DESFEGRWVLS---GKDDYKGVWKHEK--SDGHEDYGLLVSEKAKKYAIIKELD 80
Query: 284 KPFSNEGKPLVVQFSVKHEQDIDCGGGYLKVF---DCRLDQKDMHGETPYEIMFGPDICG 454
+P + + +V+QF V+ + ++CGG YLK D D K+ ETPY IMFGPD CG
Sbjct: 81 EPVTLKDGTVVLQFEVRLQNGLECGGAYLKYIRPQDAAWDAKEFDNETPYTIMFGPDKCG 140
Query: 455 PGTKKVHVIFSYK----GK--NHLIKKDIRCQDDVYTHLYTLIVKPDNTYEVLI 598
T KVH I +K GK H +K D +H+YT I+KPDN +L+
Sbjct: 141 -STNKVHFILKHKNPKTGKYVEHHLKFPPSVPYDKLSHVYTAILKPDNEVRILV 193
>03_06_0382 - 33530943-33530966,33531160-33531360,33535494-33537026
Length = 585
Score = 54.4 bits (125), Expect = 7e-08
Identities = 21/35 (60%), Positives = 27/35 (77%)
Frame = +2
Query: 494 GKNHLIKKDIRCQDDVYTHLYTLIVKPDNTYEVLI 598
G NHLIKKD+ C+ D TH+YTLI++PD Y +LI
Sbjct: 515 GNNHLIKKDVPCETDQLTHVYTLIIRPDAKYSILI 549
>11_06_0110 + 20212221-20214011,20214072-20214368
Length = 695
Score = 29.1 bits (62), Expect = 2.8
Identities = 21/72 (29%), Positives = 31/72 (43%), Gaps = 2/72 (2%)
Frame = -1
Query: 354 QSMSCSCFTLNCT--TKGLPSLLNGLNFLDRA*NLASSDVCKPLSASASL*NFPAVNLNL 181
++MS L+C +P + L LD + NL S DV + + L N L
Sbjct: 526 ENMSLEKLYLDCNHIADRIPRMPRNLMLLDISYNLISGDVPQSICELQKLNGLDLSNNLL 585
Query: 180 PNSFPGCSLYTQ 145
FP CSL ++
Sbjct: 586 EGEFPQCSLMSR 597
>06_03_1219 - 28491185-28494415
Length = 1076
Score = 29.1 bits (62), Expect = 2.8
Identities = 15/38 (39%), Positives = 22/38 (57%)
Frame = -1
Query: 165 GCSLYTQFDSHESSENFSSKNTSQFIDEIANKLAIAST 52
G SL+ S ++N SSK+T F+ E+A + A A T
Sbjct: 741 GASLFDSMSSELYNDNDSSKDTIFFMSEVAGEAAKAVT 778
>03_02_0389 -
8036575-8036841,8037011-8037133,8037516-8037736,
8037788-8037812,8038344-8038445,8038556-8038951,
8039647-8039699,8039813-8039897,8040220-8040370,
8040457-8040464
Length = 476
Score = 27.9 bits (59), Expect = 6.6
Identities = 18/48 (37%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
Frame = +2
Query: 191 LTAGKFYNDAEADKGLQTSEDARFYALSRKFK-PFSNEGKPLVVQFSV 331
L AG + + GL S ARFYA+ R + S++ VQFSV
Sbjct: 12 LVAGGYLVLERPNAGLVLSTSARFYAIVRPLRDELSHDSWAWAVQFSV 59
>08_02_1620 - 28288152-28288353,28288469-28288557,28288634-28288828,
28289082-28289423,28290227-28291672,28292590-28292666,
28293160-28294509,28295921-28296029,28296896-28297007,
28297800-28297957
Length = 1359
Score = 27.5 bits (58), Expect = 8.7
Identities = 19/59 (32%), Positives = 32/59 (54%), Gaps = 3/59 (5%)
Frame = -1
Query: 258 LASSDVCKPLSASASL*NFPAVNLNLPNSFPGCS--LYTQF-DSHESSENFSSKNTSQF 91
+A S K + ASA + + + +P S+P CS L +F D +S++ S+K S+F
Sbjct: 1248 VAVSPSLKSMFASAQMSPILPLRVLVPASYPKCSPVLLDKFPDEQRNSDDLSTKARSKF 1306
>04_03_0051 +
10199702-10199839,10199869-10200642,10202481-10203077,
10237046-10237159
Length = 540
Score = 27.5 bits (58), Expect = 8.7
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = +2
Query: 188 KLTAGKFYNDAEADKGLQTSEDARFYALSRKF 283
++ AGK Y E D +T E ARF + R++
Sbjct: 187 RMVAGKQYYGGEGDAEAETEEAARFREMVREY 218
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,913,628
Number of Sequences: 37544
Number of extensions: 366064
Number of successful extensions: 1044
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1012
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1034
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1435654836
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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