Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0007_J12
         (600 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X59589-1|CAA42159.1|  395|Caenorhabditis elegans calreticulin pr...   228   3e-60
AF125963-7|AAD14746.1|  395|Caenorhabditis elegans Calreticulin ...   228   3e-60
Z22181-5|CAA80183.1|  619|Caenorhabditis elegans Hypothetical pr...    90   1e-18
U53147-4|AAA96115.1|  668|Caenorhabditis elegans Temporarily ass...    29   2.5  
Z68302-4|CAB54515.1|  521|Caenorhabditis elegans Hypothetical pr...    29   3.3  
AF067621-1|AAC17540.2| 4368|Caenorhabditis elegans Hypothetical ...    29   3.3  
U46668-4|AAA93348.3|  951|Caenorhabditis elegans Nematode astaci...    28   5.9  
Z92809-3|CAB07269.1|  440|Caenorhabditis elegans Hypothetical pr...    27   7.7  
U41028-1|AAA82354.1|  532|Caenorhabditis elegans Hypothetical pr...    27   7.7  

>X59589-1|CAA42159.1|  395|Caenorhabditis elegans calreticulin
           protein.
          Length = 395

 Score =  228 bits (557), Expect = 3e-60
 Identities = 103/170 (60%), Positives = 132/170 (77%), Gaps = 1/170 (0%)
 Frame = +2

Query: 92  NCEVFFEEKFSDDSWESNWVYSEHPGKEFGKFKLTAGKFYNDAEADKGLQTSEDARFYAL 271
           + EV+F+E+F+D SWE  WV S+H   +FG FKL+AGKF++    D+G+QTS+DA+FY+ 
Sbjct: 14  SAEVYFKEEFNDASWEKRWVQSKHKD-DFGAFKLSAGKFFDVESRDQGIQTSQDAKFYSR 72

Query: 272 SRKF-KPFSNEGKPLVVQFSVKHEQDIDCGGGYLKVFDCRLDQKDMHGETPYEIMFGPDI 448
           + KF K FSN+GK LV+Q++VKHEQ IDCGGGY+KV     D  D HGETPY +MFGPDI
Sbjct: 73  AAKFDKDFSNKGKTLVIQYTVKHEQGIDCGGGYVKVMRADADLGDFHGETPYNVMFGPDI 132

Query: 449 CGPGTKKVHVIFSYKGKNHLIKKDIRCQDDVYTHLYTLIVKPDNTYEVLI 598
           CGP T++VHVI +YKG+N LIKK+I C+ D  THLYTLI+  DNTYEV I
Sbjct: 133 CGP-TRRVHVILNYKGENKLIKKEITCKSDELTHLYTLILNSDNTYEVKI 181


>AF125963-7|AAD14746.1|  395|Caenorhabditis elegans Calreticulin
           protein 1 protein.
          Length = 395

 Score =  228 bits (557), Expect = 3e-60
 Identities = 103/170 (60%), Positives = 132/170 (77%), Gaps = 1/170 (0%)
 Frame = +2

Query: 92  NCEVFFEEKFSDDSWESNWVYSEHPGKEFGKFKLTAGKFYNDAEADKGLQTSEDARFYAL 271
           + EV+F+E+F+D SWE  WV S+H   +FG FKL+AGKF++    D+G+QTS+DA+FY+ 
Sbjct: 14  SAEVYFKEEFNDASWEKRWVQSKHKD-DFGAFKLSAGKFFDVESRDQGIQTSQDAKFYSR 72

Query: 272 SRKF-KPFSNEGKPLVVQFSVKHEQDIDCGGGYLKVFDCRLDQKDMHGETPYEIMFGPDI 448
           + KF K FSN+GK LV+Q++VKHEQ IDCGGGY+KV     D  D HGETPY +MFGPDI
Sbjct: 73  AAKFDKDFSNKGKTLVIQYTVKHEQGIDCGGGYVKVMRADADLGDFHGETPYNVMFGPDI 132

Query: 449 CGPGTKKVHVIFSYKGKNHLIKKDIRCQDDVYTHLYTLIVKPDNTYEVLI 598
           CGP T++VHVI +YKG+N LIKK+I C+ D  THLYTLI+  DNTYEV I
Sbjct: 133 CGP-TRRVHVILNYKGENKLIKKEITCKSDELTHLYTLILNSDNTYEVKI 181


>Z22181-5|CAA80183.1|  619|Caenorhabditis elegans Hypothetical
           protein ZK632.6 protein.
          Length = 619

 Score = 89.8 bits (213), Expect = 1e-18
 Identities = 56/139 (40%), Positives = 73/139 (52%), Gaps = 13/139 (9%)
 Frame = +2

Query: 221 EADKGLQTSEDARFYALSRKFK-PFSNEGKPLVVQFSVKHEQDIDCGGGYLKVFD--CRL 391
           E D GL     AR +A++ K   PF+ +    VVQ+ +K E+  +CGGGYLK+       
Sbjct: 107 EGDLGLIVKTKARHHAIAAKLNTPFAFDANTFVVQYDIKFEEGQECGGGYLKLLSEGAEK 166

Query: 392 DQKDMHGETPYEIMFGPDICGPGTKKVHVIFSYKGK-NHLIKKDIRCQ---------DDV 541
           D  +   +T Y IMFGPD CG  T KVH+IF YK   N  I +    Q         DD 
Sbjct: 167 DLANFQDKTAYTIMFGPDKCG-ATGKVHLIFRYKNPINGTISEYHANQPTTIGSTYWDDH 225

Query: 542 YTHLYTLIVKPDNTYEVLI 598
            THL+TL+VKP   Y V +
Sbjct: 226 NTHLFTLVVKPTGEYSVSV 244


>U53147-4|AAA96115.1|  668|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 117 protein.
          Length = 668

 Score = 29.1 bits (62), Expect = 2.5
 Identities = 13/37 (35%), Positives = 20/37 (54%)
 Frame = -2

Query: 407 ACPSGPVYSRIPSGNRLRSRCPVRASH*TVPPKVCPH 297
           +C S P+   I +GN    RCP  +S  +V P+  P+
Sbjct: 196 SCTSSPIPPVIMNGNGKSERCPSTSSSSSVSPRNAPN 232


>Z68302-4|CAB54515.1|  521|Caenorhabditis elegans Hypothetical
           protein ZK792.8 protein.
          Length = 521

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 14/29 (48%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
 Frame = -1

Query: 168 PGCSLYTQFDSHESSEN-FSSKNTSQFID 85
           P C+L  QF+S E  +N     N SQFID
Sbjct: 443 PSCALCFQFESREQFDNDMRQLNLSQFID 471


>AF067621-1|AAC17540.2| 4368|Caenorhabditis elegans Hypothetical
           protein F55F10.1 protein.
          Length = 4368

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 12/38 (31%), Positives = 21/38 (55%)
 Frame = -1

Query: 153 YTQFDSHESSENFSSKNTSQFIDEIANKLAIASTADFI 40
           +T+F     ++NF SKN  +FID +   L+     D++
Sbjct: 437 FTKFYMEVFTKNFDSKNNQKFIDNLEKCLSSGRFKDYL 474


>U46668-4|AAA93348.3|  951|Caenorhabditis elegans Nematode astacin
            protease protein39 protein.
          Length = 951

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 11/40 (27%), Positives = 22/40 (55%)
 Frame = -3

Query: 367  VTASAVDVLFVLHTELYHQRFALIAEWLEFPR*GVEPRVF 248
            +T++  ++L ++HT+   +    +AE+ E PR     R F
Sbjct: 894  ITSTGPELLLIMHTDNAEEEKGFVAEYREAPRSSSTKRTF 933


>Z92809-3|CAB07269.1|  440|Caenorhabditis elegans Hypothetical
           protein R17.3 protein.
          Length = 440

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 16/51 (31%), Positives = 25/51 (49%), Gaps = 2/51 (3%)
 Frame = +3

Query: 270 YRGNSSHSAMRAN--LWWYSSV*STNRTSTAEAVT*RYSTVDWTRRTCMAR 416
           YR N + S +R N   W   +V    + +T   V   + T+DW  R C++R
Sbjct: 316 YRHNKTRSKIRRNNIYWDLPNVAEKMKKATYYCV---HYTIDWVNRNCVSR 363


>U41028-1|AAA82354.1|  532|Caenorhabditis elegans Hypothetical
           protein C25G6.3 protein.
          Length = 532

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 11/28 (39%), Positives = 18/28 (64%)
 Frame = +2

Query: 497 KNHLIKKDIRCQDDVYTHLYTLIVKPDN 580
           KNHLI   + C  D  ++LYT++ K ++
Sbjct: 300 KNHLITDGLHCH-DALSYLYTILTKGES 326


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,480,776
Number of Sequences: 27780
Number of extensions: 319692
Number of successful extensions: 875
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 836
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 866
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1279376318
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)