Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0007_J09
(334 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC4F6.18c |arf1||ADP-ribosylation factor Arf1|Schizosaccharomy... 95 3e-21
SPBC1539.08 |||ADP-ribosylation factor, Arf family|Schizosacchar... 81 3e-17
SPAC22F3.05c |alp41||ADP-ribosylation factor Alp41|Schizosacchar... 46 2e-06
SPBC31F10.06c |sar1||ADP-ribosylation factor Sar1|Schizosaccharo... 30 0.11
SPAC9E9.07c |ypt2||GTPase Ypt2 |Schizosaccharomyces pombe|chr 1|... 30 0.11
SPAC56F8.09 |rrp8||rRNA methyltransferase Rrp8 |Schizosaccharomy... 28 0.33
SPAC3C7.04 |||transcription factor |Schizosaccharomyces pombe|ch... 27 0.57
SPBC1703.10 |ypt1||GTPase Ypt1|Schizosaccharomyces pombe|chr 2||... 27 0.75
SPAC1B3.11c |ypt4||GTPase Ypt4|Schizosaccharomyces pombe|chr 1||... 26 1.3
SPAC24B11.10c |chr3|cfh1|chitin synthase regulatory factor Chr3 ... 26 1.7
SPBC1289.03c |spi1||Ran GTPase Spi1|Schizosaccharomyces pombe|ch... 26 1.7
SPCC794.03 |||amino acid permease, unknown 13|Schizosaccharomyce... 26 1.7
SPCC18B5.08c |||isoleucine-tRNA ligase|Schizosaccharomyces pombe... 25 3.0
SPAC16.01 |rho2||Rho family GTPase Rho2|Schizosaccharomyces pomb... 25 3.0
SPBC646.02 |cwf11||complexed with Cdc5 protein Cwf11 |Schizosacc... 25 3.0
SPAC2E1P3.04 |||copper amine oxidase |Schizosaccharomyces pombe|... 25 4.0
SPAC20H4.11c |rho5||Rho family GTPase Rho5|Schizosaccharomyces p... 25 4.0
SPAC20G4.01 ||SPAC22F8.13|CCR4-Not complex subunit Caf16|Schizos... 24 7.0
SPBC119.15 |||AAA family ATPase, unknown biological role|Schizos... 24 7.0
SPAC1834.02 |aro1||pentafunctional aromatic polypeptide Aro1 |Sc... 24 7.0
SPAC6F6.06c |rax2||cell polarity factor Rax2|Schizosaccharomyces... 24 7.0
SPCC895.09c |ucp12||ATP-dependent RNA helicase Ucp1 |Schizosacch... 24 7.0
SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1 |Schizosacch... 23 9.2
SPCC1322.05c |||leukotriene A-4 hydrolase |Schizosaccharomyces p... 23 9.2
SPBC1734.03 ||SPBC337.19|dihydropteroatesynthase/2-amino-4-hydro... 23 9.2
SPAC1786.03 |cut11|SPAC24C9.01|integral membrane nucleoporin|Sch... 23 9.2
SPBC26H8.04c |||DEP domain|Schizosaccharomyces pombe|chr 2|||Manual 23 9.2
SPBC211.06 |gfh1||gamma tubulin complex subunit Gfh1|Schizosacch... 23 9.2
>SPBC4F6.18c |arf1||ADP-ribosylation factor Arf1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 180
Score = 94.7 bits (225), Expect = 3e-21
Identities = 42/44 (95%), Positives = 43/44 (97%)
Frame = +2
Query: 203 LKLGEIVTTIPTIGFNVETVEYKNISFTVWDVCGQDKIRPLWRH 334
LKLGEIVTTIPTIGFNVETVEY+NISFTVWDV GQDKIRPLWRH
Sbjct: 37 LKLGEIVTTIPTIGFNVETVEYRNISFTVWDVGGQDKIRPLWRH 80
Score = 45.2 bits (102), Expect = 3e-06
Identities = 20/29 (68%), Positives = 24/29 (82%)
Frame = +1
Query: 124 AFLAKKEMRILMVGLDAAGKTTILYNTQI 210
+ K+EMRILMVGLDAAGKTTILY ++
Sbjct: 11 SLFGKREMRILMVGLDAAGKTTILYKLKL 39
>SPBC1539.08 |||ADP-ribosylation factor, Arf
family|Schizosaccharomyces pombe|chr 2|||Manual
Length = 184
Score = 81.4 bits (192), Expect = 3e-17
Identities = 35/44 (79%), Positives = 37/44 (84%)
Frame = +2
Query: 203 LKLGEIVTTIPTIGFNVETVEYKNISFTVWDVCGQDKIRPLWRH 334
LKL + V TIPT+GFNVETV YKNI F VWDV GQDKIRPLWRH
Sbjct: 41 LKLNQSVVTIPTVGFNVETVTYKNIKFNVWDVGGQDKIRPLWRH 84
Score = 43.2 bits (97), Expect = 1e-05
Identities = 19/26 (73%), Positives = 23/26 (88%)
Frame = +1
Query: 133 AKKEMRILMVGLDAAGKTTILYNTQI 210
+ KEMRILM+GLDAAGKTTILY ++
Sbjct: 18 SNKEMRILMLGLDAAGKTTILYKLKL 43
>SPAC22F3.05c |alp41||ADP-ribosylation factor
Alp41|Schizosaccharomyces pombe|chr 1|||Manual
Length = 186
Score = 46.0 bits (104), Expect = 2e-06
Identities = 21/49 (42%), Positives = 31/49 (63%), Gaps = 3/49 (6%)
Frame = +2
Query: 197 TILK--LGEIVTTI-PTIGFNVETVEYKNISFTVWDVCGQDKIRPLWRH 334
TILK L E V + PT GF + T+E + + FT+WD+ GQ +R W++
Sbjct: 31 TILKCLLNEDVNEVSPTFGFQIRTLEVEGLRFTIWDIGGQKTLRNFWKN 79
Score = 33.9 bits (74), Expect = 0.007
Identities = 14/22 (63%), Positives = 20/22 (90%)
Frame = +1
Query: 130 LAKKEMRILMVGLDAAGKTTIL 195
L ++E+R+L++GLD AGKTTIL
Sbjct: 12 LKEREVRVLLLGLDNAGKTTIL 33
>SPBC31F10.06c |sar1||ADP-ribosylation factor
Sar1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 190
Score = 29.9 bits (64), Expect = 0.11
Identities = 13/26 (50%), Positives = 18/26 (69%)
Frame = +1
Query: 121 MAFLAKKEMRILMVGLDAAGKTTILY 198
M L K ++L +GLD AGKTT+L+
Sbjct: 13 MLGLVNKHAKMLFLGLDNAGKTTLLH 38
Score = 29.9 bits (64), Expect = 0.11
Identities = 14/44 (31%), Positives = 22/44 (50%)
Frame = +2
Query: 200 ILKLGEIVTTIPTIGFNVETVEYKNISFTVWDVCGQDKIRPLWR 331
+LK + PT+ E + N+ FT +D+ G + R LWR
Sbjct: 39 MLKNDRLAVMQPTLHPTSEELAIGNVRFTTFDLGGHQQARRLWR 82
>SPAC9E9.07c |ypt2||GTPase Ypt2 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 200
Score = 29.9 bits (64), Expect = 0.11
Identities = 14/37 (37%), Positives = 21/37 (56%), Gaps = 2/37 (5%)
Frame = +2
Query: 221 VTTIPTIGFNVETVEY--KNISFTVWDVCGQDKIRPL 325
+TTI I F + T+E K I +WD GQ++ R +
Sbjct: 39 ITTIG-IDFKIRTIELDGKRIKLQIWDTAGQERFRTI 74
>SPAC56F8.09 |rrp8||rRNA methyltransferase Rrp8 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 318
Score = 28.3 bits (60), Expect = 0.33
Identities = 13/46 (28%), Positives = 28/46 (60%), Gaps = 1/46 (2%)
Frame = +2
Query: 161 LVWMLLVKLQFYTILKLGEIVTT-IPTIGFNVETVEYKNISFTVWD 295
L+W+ +K +F K GE+ +P +GF ++++ +N FT+++
Sbjct: 250 LLWVAEIKSRFSD--KSGEVFAKELPKLGFETKSIQLQNKMFTLFE 293
>SPAC3C7.04 |||transcription factor |Schizosaccharomyces pombe|chr
1|||Manual
Length = 783
Score = 27.5 bits (58), Expect = 0.57
Identities = 9/24 (37%), Positives = 16/24 (66%)
Frame = -1
Query: 331 PPQWSDFVLTAYIPHSETNVFVFY 260
PP+ SDF++ ++ H + N F F+
Sbjct: 257 PPEVSDFLIKSFYGHVQANFFFFH 280
>SPBC1703.10 |ypt1||GTPase Ypt1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 203
Score = 27.1 bits (57), Expect = 0.75
Identities = 13/36 (36%), Positives = 19/36 (52%), Gaps = 4/36 (11%)
Frame = +2
Query: 230 IPTIG--FNVETVEY--KNISFTVWDVCGQDKIRPL 325
I TIG F + T E K + +WD GQ++ R +
Sbjct: 38 ISTIGVDFKIRTFELEGKTVKLQIWDTAGQERFRTI 73
>SPAC1B3.11c |ypt4||GTPase Ypt4|Schizosaccharomyces pombe|chr
1|||Manual
Length = 234
Score = 26.2 bits (55), Expect = 1.3
Identities = 9/24 (37%), Positives = 14/24 (58%)
Frame = +2
Query: 263 EYKNISFTVWDVCGQDKIRPLWRH 334
+ K I +WD GQ+K R + R+
Sbjct: 58 QQKRIKLQIWDTAGQEKFRSVARN 81
>SPAC24B11.10c |chr3|cfh1|chitin synthase regulatory factor Chr3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 932
Score = 25.8 bits (54), Expect = 1.7
Identities = 10/12 (83%), Positives = 11/12 (91%)
Frame = +3
Query: 111 IYLNGLFGKKRN 146
IYLNGL G+KRN
Sbjct: 720 IYLNGLLGQKRN 731
>SPBC1289.03c |spi1||Ran GTPase Spi1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 216
Score = 25.8 bits (54), Expect = 1.7
Identities = 12/33 (36%), Positives = 17/33 (51%), Gaps = 4/33 (12%)
Frame = +2
Query: 230 IPTIGFNVETVEYKN----ISFTVWDVCGQDKI 316
I T+G V + + I F VWD GQ+K+
Sbjct: 39 IATLGVEVHPLHFHTNFGEICFNVWDTAGQEKL 71
>SPCC794.03 |||amino acid permease, unknown 13|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 554
Score = 25.8 bits (54), Expect = 1.7
Identities = 7/29 (24%), Positives = 17/29 (58%)
Frame = +2
Query: 158 WLVWMLLVKLQFYTILKLGEIVTTIPTIG 244
W+ +++ + LQ + + E+ + +PT G
Sbjct: 81 WITYIIAIPLQLISAATMAEVCSALPTAG 109
>SPCC18B5.08c |||isoleucine-tRNA ligase|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 973
Score = 25.0 bits (52), Expect = 3.0
Identities = 9/25 (36%), Positives = 13/25 (52%)
Frame = +2
Query: 218 IVTTIPTIGFNVETVEYKNISFTVW 292
I T P F+++ EY N+ VW
Sbjct: 237 IYFTFPVNSFSIDGCEYNNVKALVW 261
>SPAC16.01 |rho2||Rho family GTPase Rho2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 200
Score = 25.0 bits (52), Expect = 3.0
Identities = 15/55 (27%), Positives = 28/55 (50%), Gaps = 7/55 (12%)
Frame = +2
Query: 182 KLQFYTILKLGEIVTT-IPTIGFNVET---VEYKNISFTVWDVCGQ---DKIRPL 325
K ++ LG T +PT+ N + V+ K++ +WD GQ +++RP+
Sbjct: 21 KTSLLSVFTLGYFPTEYVPTVFENYVSDCRVDGKSVQLALWDTAGQEEYERLRPM 75
>SPBC646.02 |cwf11||complexed with Cdc5 protein Cwf11
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1284
Score = 25.0 bits (52), Expect = 3.0
Identities = 13/38 (34%), Positives = 20/38 (52%)
Frame = +2
Query: 164 VWMLLVKLQFYTILKLGEIVTTIPTIGFNVETVEYKNI 277
+W + K +L GEI + IG +VET E +N+
Sbjct: 1229 LWNEIEKTPDKLLLTTGEIYPSSHKIGSSVETFEIENL 1266
>SPAC2E1P3.04 |||copper amine oxidase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 712
Score = 24.6 bits (51), Expect = 4.0
Identities = 11/39 (28%), Positives = 19/39 (48%), Gaps = 2/39 (5%)
Frame = +2
Query: 212 GEIVTTIPTIGFNVETV--EYKNISFTVWDVCGQDKIRP 322
G TT T+ V+ +Y + + WD+C +K+ P
Sbjct: 497 GNAFTTERTVPKTVKEAICDYNSDTSRTWDICNPNKLHP 535
>SPAC20H4.11c |rho5||Rho family GTPase Rho5|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 200
Score = 24.6 bits (51), Expect = 4.0
Identities = 15/38 (39%), Positives = 22/38 (57%), Gaps = 6/38 (15%)
Frame = +2
Query: 230 IPTIGFN-VETVEY--KNISFTVWDVCGQ---DKIRPL 325
+PT+ N V VE ++I +WD GQ D++RPL
Sbjct: 36 VPTVFENYVADVEVDGRHIELALWDTAGQEDYDRLRPL 73
>SPAC20G4.01 ||SPAC22F8.13|CCR4-Not complex subunit
Caf16|Schizosaccharomyces pombe|chr 1|||Manual
Length = 280
Score = 23.8 bits (49), Expect = 7.0
Identities = 10/19 (52%), Positives = 14/19 (73%)
Frame = +1
Query: 139 KEMRILMVGLDAAGKTTIL 195
K R L+VG + AGK+T+L
Sbjct: 29 KGSRTLLVGANGAGKSTLL 47
>SPBC119.15 |||AAA family ATPase, unknown biological
role|Schizosaccharomyces pombe|chr 2|||Manual
Length = 367
Score = 23.8 bits (49), Expect = 7.0
Identities = 11/35 (31%), Positives = 17/35 (48%)
Frame = +1
Query: 136 KKEMRILMVGLDAAGKTTILYNTQIR*NCYNNSHY 240
KK I++VG+ +GKTT + + N Y
Sbjct: 6 KKPCAIIVVGMAGSGKTTFMQQLNAHLHSKNKPPY 40
>SPAC1834.02 |aro1||pentafunctional aromatic polypeptide Aro1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1573
Score = 23.8 bits (49), Expect = 7.0
Identities = 9/18 (50%), Positives = 13/18 (72%)
Frame = +1
Query: 139 KEMRILMVGLDAAGKTTI 192
K I+++G+ AGKTTI
Sbjct: 862 KNASIILIGMRGAGKTTI 879
>SPAC6F6.06c |rax2||cell polarity factor Rax2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1155
Score = 23.8 bits (49), Expect = 7.0
Identities = 12/32 (37%), Positives = 14/32 (43%)
Frame = +3
Query: 114 YLNGLFGKKRNENIDGWFGCCW*NYNSIQYSN 209
Y N FG +E G G C YNS + N
Sbjct: 868 YNNIFFGGNLSEQSSGCVGFCIFEYNSSSWRN 899
>SPCC895.09c |ucp12||ATP-dependent RNA helicase Ucp1
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1327
Score = 23.8 bits (49), Expect = 7.0
Identities = 13/50 (26%), Positives = 23/50 (46%)
Frame = -2
Query: 240 IVGIVVTISPNLSIV*NCSFTSSIQTNHQYSHFFFCQKGHLNKFANIFPI 91
++ +V++ PNL ++ S N ++F GHL+ FPI
Sbjct: 718 LLKLVISRIPNLKVI-----LMSATVNSDTFKYYFGNAGHLHIHGRTFPI 762
>SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 754
Score = 23.4 bits (48), Expect = 9.2
Identities = 10/21 (47%), Positives = 14/21 (66%)
Frame = -1
Query: 112 ICKHIPHFYALRIVFFRSKGF 50
+CK + F+ I+FFRSK F
Sbjct: 498 LCKEL--FHRRTIIFFRSKAF 516
>SPCC1322.05c |||leukotriene A-4 hydrolase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 612
Score = 23.4 bits (48), Expect = 9.2
Identities = 11/44 (25%), Positives = 22/44 (50%)
Frame = -2
Query: 270 LYSTVSTLNPIVGIVVTISPNLSIV*NCSFTSSIQTNHQYSHFF 139
LY+T++ VG + + P ++ +I+T +Y HF+
Sbjct: 553 LYNTIAERVGSVGRMKFVRPIFRLLNEADRAFAIETFEKYKHFY 596
>SPBC1734.03 ||SPBC337.19|dihydropteroatesynthase/2-amino-4-hydroxy-
6-
hydroxymethyldihydropteridinediphosphokinase/dihydroneop
terinaldolase|Schizosaccharomyces pombe|chr 2|||Manual
Length = 686
Score = 23.4 bits (48), Expect = 9.2
Identities = 13/35 (37%), Positives = 17/35 (48%)
Frame = +2
Query: 8 DFIEFSECSFFLILKTFASEKYYSQSIKMGNMFAN 112
D IEFS+ IL A E+ Q + + FAN
Sbjct: 130 DRIEFSDLELATILGIHAFERQEKQRVCLNISFAN 164
>SPAC1786.03 |cut11|SPAC24C9.01|integral membrane
nucleoporin|Schizosaccharomyces pombe|chr 1|||Manual
Length = 601
Score = 23.4 bits (48), Expect = 9.2
Identities = 10/17 (58%), Positives = 12/17 (70%)
Frame = +2
Query: 11 FIEFSECSFFLILKTFA 61
F +FS SFFL+ TFA
Sbjct: 100 FYDFSPKSFFLVYLTFA 116
>SPBC26H8.04c |||DEP domain|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1496
Score = 23.4 bits (48), Expect = 9.2
Identities = 11/20 (55%), Positives = 11/20 (55%)
Frame = -2
Query: 300 HTSHTVKLMFLYSTVSTLNP 241
H S KL F S STLNP
Sbjct: 1416 HNSKVSKLSFTKSNKSTLNP 1435
>SPBC211.06 |gfh1||gamma tubulin complex subunit
Gfh1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 577
Score = 23.4 bits (48), Expect = 9.2
Identities = 7/25 (28%), Positives = 14/25 (56%)
Frame = +1
Query: 256 DCRIQKH*FHCVGCMRSGQNQTTVE 330
DC++ H H + C+R +N + +
Sbjct: 540 DCQLAAHVSHSIECIRQKENDPSYD 564
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,554,446
Number of Sequences: 5004
Number of extensions: 32370
Number of successful extensions: 127
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 110
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 127
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 93942212
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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