Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0007_J07
         (411 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL132876-6|CAC48121.2|  350|Caenorhabditis elegans Hypothetical ...    28   3.0  
AF039053-4|AAC25876.1|  304|Caenorhabditis elegans Serpentine re...    27   4.0  
U39997-9|AAA81101.2|  468|Caenorhabditis elegans Hypothetical pr...    27   5.3  
AL023838-7|CAE47473.1|  357|Caenorhabditis elegans Hypothetical ...    27   5.3  
AL023838-6|CAB61038.2|  395|Caenorhabditis elegans Hypothetical ...    27   5.3  
AF061201-1|AAD10194.1|  357|Caenorhabditis elegans RAD51 short i...    27   5.3  
AB011382-1|BAA24982.1|  357|Caenorhabditis elegans RecA/Rad51/Dm...    27   5.3  

>AL132876-6|CAC48121.2|  350|Caenorhabditis elegans Hypothetical
           protein Y105E8A.6 protein.
          Length = 350

 Score = 27.9 bits (59), Expect = 3.0
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = -3

Query: 385 DSFILLILCHRCARILKFHSHHFFITHLKK 296
           D  IL  L     R  KFH++HF  T+ +K
Sbjct: 278 DGAILTALAPNSERAQKFHTYHFMCTYCQK 307


>AF039053-4|AAC25876.1|  304|Caenorhabditis elegans Serpentine
           receptor, class bc (class b-like) protein 24 protein.
          Length = 304

 Score = 27.5 bits (58), Expect = 4.0
 Identities = 11/21 (52%), Positives = 17/21 (80%)
 Frame = -1

Query: 180 LSLIVFNLNHIKKNLIIVFFF 118
           LS+I+FNLN++K + + VF F
Sbjct: 65  LSIIIFNLNYLKLSDLRVFIF 85


>U39997-9|AAA81101.2|  468|Caenorhabditis elegans Hypothetical
           protein F56D1.1 protein.
          Length = 468

 Score = 27.1 bits (57), Expect = 5.3
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = -3

Query: 361 CHRCARILKFHSHHFFITHLKKYN 290
           CH C +  KFH+   F  HL KY+
Sbjct: 431 CHTCNQ--KFHARDRFAVHLSKYH 452


>AL023838-7|CAE47473.1|  357|Caenorhabditis elegans Hypothetical
           protein Y43C5A.6b protein.
          Length = 357

 Score = 27.1 bits (57), Expect = 5.3
 Identities = 14/41 (34%), Positives = 22/41 (53%)
 Frame = +3

Query: 159 G*IRLVIRMFNTFQIRLCASMTLICQSSIKMYGQQHICIVI 281
           G I  V   + T + +LC S+ ++CQ  I M G +  C+ I
Sbjct: 136 GSITEVYGEYRTGKTQLCHSLAVLCQLPIDMGGGEGKCMYI 176


>AL023838-6|CAB61038.2|  395|Caenorhabditis elegans Hypothetical
           protein Y43C5A.6a protein.
          Length = 395

 Score = 27.1 bits (57), Expect = 5.3
 Identities = 14/41 (34%), Positives = 22/41 (53%)
 Frame = +3

Query: 159 G*IRLVIRMFNTFQIRLCASMTLICQSSIKMYGQQHICIVI 281
           G I  V   + T + +LC S+ ++CQ  I M G +  C+ I
Sbjct: 174 GSITEVYGEYRTGKTQLCHSLAVLCQLPIDMGGGEGKCMYI 214


>AF061201-1|AAD10194.1|  357|Caenorhabditis elegans RAD51 short
           isoform protein.
          Length = 357

 Score = 27.1 bits (57), Expect = 5.3
 Identities = 14/41 (34%), Positives = 22/41 (53%)
 Frame = +3

Query: 159 G*IRLVIRMFNTFQIRLCASMTLICQSSIKMYGQQHICIVI 281
           G I  V   + T + +LC S+ ++CQ  I M G +  C+ I
Sbjct: 136 GSITEVYGEYRTGKTQLCHSLAVLCQLPIDMGGGEGKCMYI 176


>AB011382-1|BAA24982.1|  357|Caenorhabditis elegans
           RecA/Rad51/Dmc1-like protein protein.
          Length = 357

 Score = 27.1 bits (57), Expect = 5.3
 Identities = 14/41 (34%), Positives = 22/41 (53%)
 Frame = +3

Query: 159 G*IRLVIRMFNTFQIRLCASMTLICQSSIKMYGQQHICIVI 281
           G I  V   + T + +LC S+ ++CQ  I M G +  C+ I
Sbjct: 136 GSITEVYGEYRTGKTQLCHSLAVLCQLPIDMGGGEGKCMYI 176


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,345,977
Number of Sequences: 27780
Number of extensions: 126656
Number of successful extensions: 269
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 266
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 269
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 662437636
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)