Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0007_J06
(526 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC25G10.08 |||translation initiation factor eIF3b |Schizosacch... 78 7e-16
SPBC13G1.14c |||RNA-binding protein|Schizosaccharomyces pombe|ch... 35 0.009
SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 35 0.009
SPBC17G9.05 |rct1|cyp6|RRM-containing cyclophilin regulating tra... 31 0.080
SPBC887.05c |cwf29||RNA-binding protein Cwf29|Schizosaccharomyce... 31 0.080
SPBC428.12c |||RNA-binding protein|Schizosaccharomyces pombe|chr... 31 0.11
SPBC23E6.01c ||SPBPJ758.01|RNA-binding protein, rrm type|Schizos... 31 0.11
SPBC1348.07 |||S. pombe specific DUF999 protein family 6|Schizos... 31 0.14
SPAC977.06 |||S. pombe specific DUF999 family protein 3|Schizosa... 30 0.18
SPBPB2B2.07c |||S. pombe specific DUF999 protein family 7|Schizo... 30 0.18
SPBPB2B2.14c |||S. pombe specific DUF999 protein family 8|Schizo... 30 0.18
SPAC212.01c |||S. pombe specific DUF999 family protein 2|Schizos... 29 0.56
SPBCPT2R1.04c |||S. pombe specific DUF999 protein family 10|Schi... 29 0.56
SPBCPT2R1.01c ||SPBPB2B2.20c|S. pombe specific DUF999 protein fa... 29 0.56
SPBC1348.01 |||S. pombe specific DUF999 protein family 5|Schizos... 29 0.56
SPBP35G2.06c |nup131|Nup133a|nucleoporin Nup131|Schizosaccharomy... 29 0.56
SPAC212.04c |||S. pombe specific DUF999 family protein 1|Schizos... 28 0.74
SPAC57A7.04c |pabp||mRNA export shuttling protein |Schizosacchar... 28 0.98
SPCC970.09 |sec8||exocyst complex subunit Sec8|Schizosaccharomyc... 27 1.7
SPAC750.06c |||S. pombe specific DUF999 protein family 4|Schizos... 27 2.3
SPAC328.05 |||RNA-binding protein involved in export of mRNAs|Sc... 26 4.0
SPBC365.04c |||RNA-binding protein|Schizosaccharomyces pombe|chr... 26 4.0
SPAC688.04c |gst3||glutathione S-transferase |Schizosaccharomyce... 25 5.2
SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1 |Schizosacch... 25 6.9
SPAC23C11.03 |||U3 snoRNP-associated protein Mpp1 |Schizosacchar... 25 6.9
SPAC4D7.12c |fet5||transcription factor Fet5|Schizosaccharomyces... 25 6.9
SPAC22H10.09 |||sequence orphan|Schizosaccharomyces pombe|chr 1|... 25 6.9
SPAC2F7.13c |||tryptophan-tRNA ligase |Schizosaccharomyces pombe... 25 6.9
SPBC31F10.13c |hip1|hir1|hira protein Hip1|Schizosaccharomyces p... 25 6.9
SPBC26H8.10 |dis3|rrp44|3'-5' exoribonuclease subunit Dis3 |Schi... 25 6.9
SPCC613.10 |qcr2||ubiquinol-cytochrome-c reductase complex core ... 25 9.1
SPBC3E7.09 |||Sad1-UNC-like C-terminal|Schizosaccharomyces pombe... 25 9.1
>SPAC25G10.08 |||translation initiation factor eIF3b
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 725
Score = 78.2 bits (184), Expect = 7e-16
Identities = 49/169 (28%), Positives = 79/169 (46%), Gaps = 6/169 (3%)
Frame = +1
Query: 37 GYENVIVVDGCPQVGPERLEKL-QSVINKIFSKFGKIVNE--YYPTTESGA---TTGFIF 198
GY+ V+V++G P V + + + + +K+ +K GK+ Y P E + G +F
Sbjct: 36 GYDTVVVIEGAPVVEEAKQQDFFRFLSSKVLAKIGKVKENGFYMPFEEKNGKKMSLGLVF 95
Query: 199 LEYTNPQNAAEAVKATNNCKLDKQHTFLVNLFTDFNKYSDIPKEWEPPSPQPFKVQSDLQ 378
++ N A V+ + ++ K HTF+V K P E+ + FK + L+
Sbjct: 96 ADFENVDGADLCVQELDGKQILKNHTFVVRKLNQLEKAFSTPDEFSFEERE-FKEREHLR 154
Query: 379 WYLMDPDAYDQFLVGIGTGVSLQVWQNALPEPLMLQERPNWTETYAVWS 525
+L D DQF+ G VS+ W P + +R NWTETY WS
Sbjct: 155 SWLTDYYGRDQFISYYGNRVSVN-WNRKSDVPEQIVDRENWTETYVQWS 202
>SPBC13G1.14c |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 243
Score = 34.7 bits (76), Expect = 0.009
Identities = 19/58 (32%), Positives = 30/58 (51%), Gaps = 1/58 (1%)
Frame = +1
Query: 112 INKIFSKFGKIVNEYYPT-TESGATTGFIFLEYTNPQNAAEAVKATNNCKLDKQHTFL 282
I +IF +G I + + P +S G+ ++EY AA AV NN +LD + F+
Sbjct: 115 IAEIFGIYGLIDHIFMPIYKKSELNKGYCYIEYVYHDQAANAVDKMNNAELDGEELFV 172
>SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 674
Score = 34.7 bits (76), Expect = 0.009
Identities = 17/47 (36%), Positives = 25/47 (53%)
Frame = +1
Query: 124 FSKFGKIVNEYYPTTESGATTGFIFLEYTNPQNAAEAVKATNNCKLD 264
FSKFGK+ PT G GF F+ + + A EA+ + N ++D
Sbjct: 128 FSKFGKVREIKIPTKGGGRMCGFAFVWMKDRKAAEEAMNSLNGTEID 174
>SPBC17G9.05 |rct1|cyp6|RRM-containing cyclophilin regulating
transcription Rct1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 432
Score = 31.5 bits (68), Expect = 0.080
Identities = 15/49 (30%), Positives = 28/49 (57%), Gaps = 1/49 (2%)
Frame = +1
Query: 121 IFSKFGKIVN-EYYPTTESGATTGFIFLEYTNPQNAAEAVKATNNCKLD 264
IFS+FGKI++ + E+G + + F+E+ N ++ +A N +D
Sbjct: 263 IFSRFGKIISCQVIRDKETGDSLQYAFIEFDNKESVEKAYFKMQNVLID 311
>SPBC887.05c |cwf29||RNA-binding protein Cwf29|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 217
Score = 31.5 bits (68), Expect = 0.080
Identities = 17/48 (35%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
Frame = +1
Query: 121 IFSKFGKIVN-EYYPTTESGATTGFIFLEYTNPQNAAEAVKATNNCKL 261
+FS+FG+ V+ E+G + GF FL+Y + ++ AV N KL
Sbjct: 50 VFSEFGEPVDINLVRDKETGKSKGFAFLKYEDQRSTVLAVDNMTNVKL 97
>SPBC428.12c |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 116
Score = 31.1 bits (67), Expect = 0.11
Identities = 13/49 (26%), Positives = 26/49 (53%)
Frame = +1
Query: 103 QSVINKIFSKFGKIVNEYYPTTESGATTGFIFLEYTNPQNAAEAVKATN 249
+S++ F FG+I++ E + F+E+ P++A EA++ N
Sbjct: 19 ESLLYNAFIPFGEIISVALHRKEKAVDRSYAFVEFDEPEDAKEAMENMN 67
>SPBC23E6.01c ||SPBPJ758.01|RNA-binding protein, rrm
type|Schizosaccharomyces pombe|chr 2|||Manual
Length = 473
Score = 31.1 bits (67), Expect = 0.11
Identities = 15/63 (23%), Positives = 30/63 (47%), Gaps = 1/63 (1%)
Frame = +1
Query: 103 QSVINKIFSKFGKIVN-EYYPTTESGATTGFIFLEYTNPQNAAEAVKATNNCKLDKQHTF 279
++ I ++++ GK V + +G G+ F+E+ +P A+ A+ N H F
Sbjct: 106 EAFIQQVWNTLGKAVKVKLIRNRYTGMNAGYCFVEFASPHEASSAMSMNNKPIPGTNHLF 165
Query: 280 LVN 288
+N
Sbjct: 166 KLN 168
>SPBC1348.07 |||S. pombe specific DUF999 protein family
6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 230
Score = 30.7 bits (66), Expect = 0.14
Identities = 15/33 (45%), Positives = 19/33 (57%)
Frame = +1
Query: 220 NAAEAVKATNNCKLDKQHTFLVNLFTDFNKYSD 318
N + K N K DK FL NLFT+F+K+ D
Sbjct: 30 NIVKPQKDKINIKTDKIKFFLNNLFTEFSKFHD 62
>SPAC977.06 |||S. pombe specific DUF999 family protein
3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 189
Score = 30.3 bits (65), Expect = 0.18
Identities = 15/33 (45%), Positives = 19/33 (57%)
Frame = +1
Query: 220 NAAEAVKATNNCKLDKQHTFLVNLFTDFNKYSD 318
N + K N K DK FL NLFT+F+K+ D
Sbjct: 30 NIIKPQKDKINIKTDKIKFFLNNLFTEFSKFHD 62
>SPBPB2B2.07c |||S. pombe specific DUF999 protein family
7|Schizosaccharomyces pombe|chr 2|||Manual
Length = 165
Score = 30.3 bits (65), Expect = 0.18
Identities = 15/33 (45%), Positives = 19/33 (57%)
Frame = +1
Query: 220 NAAEAVKATNNCKLDKQHTFLVNLFTDFNKYSD 318
N + K N K DK FL NLFT+F+K+ D
Sbjct: 50 NIIKPQKDKINIKTDKIKFFLNNLFTEFSKFHD 82
>SPBPB2B2.14c |||S. pombe specific DUF999 protein family
8|Schizosaccharomyces pombe|chr 2|||Manual
Length = 230
Score = 30.3 bits (65), Expect = 0.18
Identities = 15/33 (45%), Positives = 19/33 (57%)
Frame = +1
Query: 220 NAAEAVKATNNCKLDKQHTFLVNLFTDFNKYSD 318
N + K N K DK FL NLFT+F+K+ D
Sbjct: 30 NIIKPQKDKINIKTDKIKFFLDNLFTEFSKFHD 62
>SPAC212.01c |||S. pombe specific DUF999 family protein
2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 280
Score = 28.7 bits (61), Expect = 0.56
Identities = 10/35 (28%), Positives = 18/35 (51%)
Frame = +1
Query: 88 RLEKLQSVINKIFSKFGKIVNEYYPTTESGATTGF 192
+ K++ +N +F++F K N YYP + F
Sbjct: 71 KTNKIKEFLNDLFTEFSKFHNSYYPDGRISTRSNF 105
Score = 25.4 bits (53), Expect = 5.2
Identities = 12/31 (38%), Positives = 18/31 (58%)
Frame = +1
Query: 220 NAAEAVKATNNCKLDKQHTFLVNLFTDFNKY 312
N + K N K +K FL +LFT+F+K+
Sbjct: 59 NTIKPQKDKMNIKTNKIKEFLNDLFTEFSKF 89
>SPBCPT2R1.04c |||S. pombe specific DUF999 protein family
10|Schizosaccharomyces pombe|chr 2|||Manual
Length = 280
Score = 28.7 bits (61), Expect = 0.56
Identities = 10/35 (28%), Positives = 18/35 (51%)
Frame = +1
Query: 88 RLEKLQSVINKIFSKFGKIVNEYYPTTESGATTGF 192
+ K++ +N +F++F K N YYP + F
Sbjct: 71 KTNKIKEFLNDLFTEFSKFHNSYYPDGRISTRSNF 105
Score = 25.4 bits (53), Expect = 5.2
Identities = 12/31 (38%), Positives = 18/31 (58%)
Frame = +1
Query: 220 NAAEAVKATNNCKLDKQHTFLVNLFTDFNKY 312
N + K N K +K FL +LFT+F+K+
Sbjct: 59 NTIKPQKDKMNIKTNKIKEFLNDLFTEFSKF 89
>SPBCPT2R1.01c ||SPBPB2B2.20c|S. pombe specific DUF999 protein
family 9|Schizosaccharomyces pombe|chr 2|||Manual
Length = 269
Score = 28.7 bits (61), Expect = 0.56
Identities = 10/35 (28%), Positives = 18/35 (51%)
Frame = +1
Query: 88 RLEKLQSVINKIFSKFGKIVNEYYPTTESGATTGF 192
+ K++ +N +F++F K N YYP + F
Sbjct: 71 KTNKIKEFLNDLFTEFSKFHNSYYPDGRISTRSNF 105
Score = 25.4 bits (53), Expect = 5.2
Identities = 12/31 (38%), Positives = 18/31 (58%)
Frame = +1
Query: 220 NAAEAVKATNNCKLDKQHTFLVNLFTDFNKY 312
N + K N K +K FL +LFT+F+K+
Sbjct: 59 NTIKPQKDKMNIKTNKIKEFLNDLFTEFSKF 89
>SPBC1348.01 |||S. pombe specific DUF999 protein family
5|Schizosaccharomyces pombe|chr 2|||Manual
Length = 269
Score = 28.7 bits (61), Expect = 0.56
Identities = 10/35 (28%), Positives = 18/35 (51%)
Frame = +1
Query: 88 RLEKLQSVINKIFSKFGKIVNEYYPTTESGATTGF 192
+ K++ +N +F++F K N YYP + F
Sbjct: 71 KTNKIKEFLNDLFTEFSKFHNSYYPDGRISTRSNF 105
Score = 25.4 bits (53), Expect = 5.2
Identities = 12/31 (38%), Positives = 18/31 (58%)
Frame = +1
Query: 220 NAAEAVKATNNCKLDKQHTFLVNLFTDFNKY 312
N + K N K +K FL +LFT+F+K+
Sbjct: 59 NTIKPQKDKMNIKTNKIKEFLNDLFTEFSKF 89
>SPBP35G2.06c |nup131|Nup133a|nucleoporin Nup131|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1142
Score = 28.7 bits (61), Expect = 0.56
Identities = 19/69 (27%), Positives = 33/69 (47%), Gaps = 1/69 (1%)
Frame = +1
Query: 4 RGLEQKPKESDGYENVIVVDGCPQVGPE-RLEKLQSVINKIFSKFGKIVNEYYPTTESGA 180
+ ++ K D VI++D P +L+K ++ +NK +F ++ Y TE A
Sbjct: 773 KAIDLAEKVKDFQTMVILLDCLDPKDPTIKLQKQKACLNKYKEEFADVIFFYLVDTEQYA 832
Query: 181 TTGFIFLEY 207
+ FLEY
Sbjct: 833 SLLHDFLEY 841
>SPAC212.04c |||S. pombe specific DUF999 family protein
1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 288
Score = 28.3 bits (60), Expect = 0.74
Identities = 9/25 (36%), Positives = 16/25 (64%)
Frame = +1
Query: 88 RLEKLQSVINKIFSKFGKIVNEYYP 162
+ K++ +N +F++F K N YYP
Sbjct: 71 KTNKIKEFLNDLFTEFSKFHNSYYP 95
Score = 25.4 bits (53), Expect = 5.2
Identities = 12/31 (38%), Positives = 18/31 (58%)
Frame = +1
Query: 220 NAAEAVKATNNCKLDKQHTFLVNLFTDFNKY 312
N + K N K +K FL +LFT+F+K+
Sbjct: 59 NTIKPQKDKMNIKTNKIKEFLNDLFTEFSKF 89
>SPAC57A7.04c |pabp||mRNA export shuttling protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 653
Score = 27.9 bits (59), Expect = 0.98
Identities = 16/81 (19%), Positives = 36/81 (44%)
Frame = +1
Query: 94 EKLQSVINKIFSKFGKIVNEYYPTTESGATTGFIFLEYTNPQNAAEAVKATNNCKLDKQH 273
E + + +F +FG+I + ++ GF F+ Y N + A +AV N+ + +
Sbjct: 271 EITEQEFSDLFGQFGEITSLSLVKDQNDKPRGFGFVNYANHECAQKAVDELNDKEYKGKK 330
Query: 274 TFLVNLFTDFNKYSDIPKEWE 336
++ + ++ K +E
Sbjct: 331 LYVGRAQKKHEREEELRKRYE 351
>SPCC970.09 |sec8||exocyst complex subunit Sec8|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1088
Score = 27.1 bits (57), Expect = 1.7
Identities = 11/27 (40%), Positives = 18/27 (66%)
Frame = -1
Query: 283 LKMYAAYLIYNYLSPSPLQQRSGDWYI 203
LK AY I +Y SP+PL++ S +++
Sbjct: 250 LKDAVAYPIVSYCSPNPLRETSNPYFL 276
>SPAC750.06c |||S. pombe specific DUF999 protein family
4|Schizosaccharomyces pombe|chr 1|||Manual
Length = 280
Score = 26.6 bits (56), Expect = 2.3
Identities = 10/35 (28%), Positives = 17/35 (48%)
Frame = +1
Query: 88 RLEKLQSVINKIFSKFGKIVNEYYPTTESGATTGF 192
+ K++ +N F++F K N YYP + F
Sbjct: 71 KTNKIKEFLNDPFTEFSKFHNSYYPDGRISTRSNF 105
>SPAC328.05 |||RNA-binding protein involved in export of
mRNAs|Schizosaccharomyces pombe|chr 1|||Manual
Length = 434
Score = 25.8 bits (54), Expect = 4.0
Identities = 11/49 (22%), Positives = 23/49 (46%)
Frame = +1
Query: 112 INKIFSKFGKIVNEYYPTTESGATTGFIFLEYTNPQNAAEAVKATNNCK 258
+ + + G ++N +G + G +EY+ + A A+K +N K
Sbjct: 82 LKEFMGQVGNVLNCEILNLPNGLSKGCAIIEYSTAEEARTAIKTLSNQK 130
>SPBC365.04c |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 233
Score = 25.8 bits (54), Expect = 4.0
Identities = 11/33 (33%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
Frame = +1
Query: 124 FSKFGKIVNEYYPTTE-SGATTGFIFLEYTNPQ 219
F + G++ + PT + SG G+ F+E+ NP+
Sbjct: 112 FKRAGQVPSVRIPTDKTSGRQKGYAFVEFINPK 144
>SPAC688.04c |gst3||glutathione S-transferase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 242
Score = 25.4 bits (53), Expect = 5.2
Identities = 9/21 (42%), Positives = 15/21 (71%)
Frame = +1
Query: 310 YSDIPKEWEPPSPQPFKVQSD 372
+SD+ + PP+P P +V+SD
Sbjct: 221 FSDVERYSHPPTPPPEQVRSD 241
>SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 754
Score = 25.0 bits (52), Expect = 6.9
Identities = 15/32 (46%), Positives = 16/32 (50%)
Frame = +1
Query: 268 QHTFLVNLFTDFNKYSDIPKEWEPPSPQPFKV 363
Q+T LVN DFNK KE E P KV
Sbjct: 626 QNTKLVNRNLDFNKVEKFGKEIEELEPVVQKV 657
>SPAC23C11.03 |||U3 snoRNP-associated protein Mpp1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 598
Score = 25.0 bits (52), Expect = 6.9
Identities = 14/52 (26%), Positives = 26/52 (50%), Gaps = 2/52 (3%)
Frame = +1
Query: 202 EYTNPQNAAEAVKATNNCKLDKQHTFLVNLFTDFNKYSDIPKEWE--PPSPQ 351
E+ NA + K+ + K +K+H + LF++ ++ D W PP P+
Sbjct: 416 EFLKKSNA-DTYKSEADKKKEKEHEEIKALFSEVSRTLDSLASWHYVPPPPE 466
>SPAC4D7.12c |fet5||transcription factor Fet5|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 276
Score = 25.0 bits (52), Expect = 6.9
Identities = 20/74 (27%), Positives = 30/74 (40%), Gaps = 7/74 (9%)
Frame = +1
Query: 208 TNPQNAAEAVKATNNCKLDKQHTFLVNLFTDFNKYSDIPKE---WEPPSPQPFKVQSDLQ 378
T+P + T N K + + +V L DFN + +P E E S + Q
Sbjct: 195 TDPLLLTGEINETTNPKFHELNRCIVQLIDDFNMVNFLPLESGNEESVSRVLSYIDDATQ 254
Query: 379 WY----LMDPDAYD 408
WY DPD ++
Sbjct: 255 WYEDQEPKDPDRFE 268
>SPAC22H10.09 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 646
Score = 25.0 bits (52), Expect = 6.9
Identities = 11/40 (27%), Positives = 22/40 (55%)
Frame = +1
Query: 103 QSVINKIFSKFGKIVNEYYPTTESGATTGFIFLEYTNPQN 222
Q +++I++K K ++ +YP E + + L +TN N
Sbjct: 84 QRELSEIYNKCLKALHPFYPVFEVNSNLYYQLLMFTNYSN 123
>SPAC2F7.13c |||tryptophan-tRNA ligase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 395
Score = 25.0 bits (52), Expect = 6.9
Identities = 10/27 (37%), Positives = 17/27 (62%)
Frame = +1
Query: 40 YENVIVVDGCPQVGPERLEKLQSVINK 120
YE +IV G ++ PE+LE+ + + K
Sbjct: 27 YERLIVQFGTRKITPEQLERFEKLTGK 53
>SPBC31F10.13c |hip1|hir1|hira protein Hip1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 932
Score = 25.0 bits (52), Expect = 6.9
Identities = 9/18 (50%), Positives = 12/18 (66%)
Frame = +1
Query: 427 GTGVSLQVWQNALPEPLM 480
G SL +W +ALP PL+
Sbjct: 298 GQDRSLSIWSSALPRPLL 315
>SPBC26H8.10 |dis3|rrp44|3'-5' exoribonuclease subunit Dis3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 970
Score = 25.0 bits (52), Expect = 6.9
Identities = 10/25 (40%), Positives = 16/25 (64%)
Frame = -3
Query: 248 FVAFTASAAFWGLVYSKNMNPVVAP 174
FV F A G+VY+K+++ V+ P
Sbjct: 891 FVVFIARFGLEGIVYTKSLSSVLEP 915
>SPCC613.10 |qcr2||ubiquinol-cytochrome-c reductase complex core
protein Qcr2|Schizosaccharomyces pombe|chr 3|||Manual
Length = 426
Score = 24.6 bits (51), Expect = 9.1
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = -2
Query: 93 EALGPDLWAAIDNDHILVTIRFL 25
E LG L I +HI++T RFL
Sbjct: 86 ELLGGQLSTQITREHIILTARFL 108
>SPBC3E7.09 |||Sad1-UNC-like C-terminal|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 659
Score = 24.6 bits (51), Expect = 9.1
Identities = 14/43 (32%), Positives = 22/43 (51%)
Frame = -2
Query: 312 VLIKICEQIY*KCMLLI*FTIICRLHRFSSVLGIGIF*EYESS 184
V+I++CE IY + + F + R V G + +YESS
Sbjct: 237 VVIELCEDIYVDTVQIANFEFFSSIFRDFKVSVSGKYPKYESS 279
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.315 0.134 0.416
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,498,684
Number of Sequences: 5004
Number of extensions: 56130
Number of successful extensions: 158
Number of sequences better than 10.0: 32
Number of HSP's better than 10.0 without gapping: 149
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 156
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 214353836
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)
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