Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0007_J06
(526 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AL032646-10|CAA21681.1| 725|Caenorhabditis elegans Hypothetical... 99 1e-21
AL032646-11|CAE46682.1| 193|Caenorhabditis elegans Hypothetical... 76 2e-14
Z50110-2|CAA90446.1| 566|Caenorhabditis elegans Hypothetical pr... 35 0.031
Z50110-1|CAA90444.1| 692|Caenorhabditis elegans Hypothetical pr... 35 0.031
U21320-5|AAA62536.2| 332|Caenorhabditis elegans Rnp (rrm rna bi... 33 0.095
AL137227-1|CAB70238.2| 611|Caenorhabditis elegans Hypothetical ... 31 0.38
Z83230-6|CAB05746.1| 336|Caenorhabditis elegans Hypothetical pr... 31 0.50
Z81108-1|CAB03236.1| 83|Caenorhabditis elegans Hypothetical pr... 30 0.88
AC024791-23|AAM81102.1| 346|Caenorhabditis elegans Rnp (rrm rna... 30 0.88
U80455-1|AAB37881.1| 584|Caenorhabditis elegans Elav-type rna b... 30 1.2
U53931-1|AAA98566.1| 584|Caenorhabditis elegans elav-type ribon... 30 1.2
EF523770-1|ABS18836.1| 513|Caenorhabditis elegans ELAV-type RNA... 30 1.2
EF523768-1|ABS18834.1| 378|Caenorhabditis elegans ELAV-type RNA... 30 1.2
EF523766-1|ABS18832.1| 584|Caenorhabditis elegans ELAV-type RNA... 30 1.2
Z81038-2|CAB02757.1| 454|Caenorhabditis elegans Hypothetical pr... 29 1.5
Z32683-11|CAA83626.1| 142|Caenorhabditis elegans Hypothetical p... 29 1.5
AL117204-22|CAB55151.1| 331|Caenorhabditis elegans Hypothetical... 29 1.5
AL032657-5|CAD27615.1| 1045|Caenorhabditis elegans Hypothetical ... 29 1.5
AL032657-4|CAD27614.1| 1070|Caenorhabditis elegans Hypothetical ... 29 1.5
AL032657-3|CAA21739.1| 1111|Caenorhabditis elegans Hypothetical ... 29 1.5
AF332568-1|AAG60061.1| 1111|Caenorhabditis elegans CED-1 protein. 29 1.5
Z68006-7|CAA91995.2| 783|Caenorhabditis elegans Hypothetical pr... 29 2.0
AF497831-1|AAM18109.1| 783|Caenorhabditis elegans putative Na-H... 29 2.0
AC024791-22|AAF60676.1| 339|Caenorhabditis elegans Rnp (rrm rna... 28 3.6
AC024791-21|AAF60666.1| 749|Caenorhabditis elegans Rnp (rrm rna... 28 3.6
U41109-9|AAB37039.1| 239|Caenorhabditis elegans Hypothetical pr... 28 4.7
U41106-2|AAA82410.1| 797|Caenorhabditis elegans Hypothetical pr... 28 4.7
AL590342-2|CAC35859.3| 685|Caenorhabditis elegans Hypothetical ... 28 4.7
AL132952-21|CAB61149.2| 706|Caenorhabditis elegans Hypothetical... 28 4.7
AL032622-4|CAA21499.1| 738|Caenorhabditis elegans Y66A7A.5 prot... 28 4.7
Z81108-4|CAB03237.1| 85|Caenorhabditis elegans Hypothetical pr... 27 6.2
Z81052-6|CAB02874.1| 336|Caenorhabditis elegans Hypothetical pr... 27 8.2
Z66498-2|CAA91291.2| 419|Caenorhabditis elegans Hypothetical pr... 27 8.2
U50313-4|AAA92328.1| 417|Caenorhabditis elegans Hypothetical pr... 27 8.2
EF523769-1|ABS18835.1| 327|Caenorhabditis elegans ELAV-type RNA... 27 8.2
>AL032646-10|CAA21681.1| 725|Caenorhabditis elegans Hypothetical
protein Y54E2A.11a protein.
Length = 725
Score = 99 bits (238), Expect = 1e-21
Identities = 59/180 (32%), Positives = 82/180 (45%), Gaps = 8/180 (4%)
Frame = +1
Query: 10 LEQKPKESDGYENVIVVDGCPQVGPERLEKLQSVINKIFSKFGKIVNEYYPTTESGATTG 189
L +KP + +N + + G P VG +RL KLQSV+ K+ + V Y P + G G
Sbjct: 34 LHKKPTIDEFEDNCVFIAGIPVVGADRLGKLQSVLKKVLERLDPAVKLYIPPSPEGGCLG 93
Query: 190 FIFLEYTNPQNAAEAVKATNNCKLDKQHTFLVNLFTDFNKYSDIPKEWEPPSPQPFKVQS 369
+ E+ + ++A AVK+ N DK HTF F D + W P Q +
Sbjct: 94 VLLTEWADQRSAQFAVKSLNGYAFDKNHTFTARSFKDMKQLEAPSDHWTTPEKQAYNDVG 153
Query: 370 DLQWYLMDPDAYDQFLV-----GIGT-GVSLQVWQN--ALPEPLMLQERPNWTETYAVWS 525
DL W+L + DQF + G+ T GV + N L ER NWTET WS
Sbjct: 154 DLWWWLQNERCRDQFAISHDKLGVPTVGVFTNMKGNDPELAGDADKAERANWTETVFTWS 213
>AL032646-11|CAE46682.1| 193|Caenorhabditis elegans Hypothetical
protein Y54E2A.11b protein.
Length = 193
Score = 75.8 bits (178), Expect = 2e-14
Identities = 37/114 (32%), Positives = 54/114 (47%)
Frame = +1
Query: 10 LEQKPKESDGYENVIVVDGCPQVGPERLEKLQSVINKIFSKFGKIVNEYYPTTESGATTG 189
L +KP + +N + + G P VG +RL KLQSV+ K+ + V Y P + G G
Sbjct: 34 LHKKPTIDEFEDNCVFIAGIPVVGADRLGKLQSVLKKVLERLDPAVKLYIPPSPEGGCLG 93
Query: 190 FIFLEYTNPQNAAEAVKATNNCKLDKQHTFLVNLFTDFNKYSDIPKEWEPPSPQ 351
+ E+ + ++A AVK+ N DK HTF F D + W P Q
Sbjct: 94 VLLTEWADQRSAQFAVKSLNGYAFDKNHTFTARSFKDMKQLEAPSDHWTTPEKQ 147
>Z50110-2|CAA90446.1| 566|Caenorhabditis elegans Hypothetical
protein F18H3.3b protein.
Length = 566
Score = 35.1 bits (77), Expect = 0.031
Identities = 17/54 (31%), Positives = 29/54 (53%)
Frame = +1
Query: 103 QSVINKIFSKFGKIVNEYYPTTESGATTGFIFLEYTNPQNAAEAVKATNNCKLD 264
Q ++ +FSKFG+I + T G GF F+ + + A +AV+ N+ L+
Sbjct: 251 QEKLSAMFSKFGEITSAVVMTDAQGKPKGFGFVAFADQDAAGQAVEKLNDSILE 304
Score = 30.7 bits (66), Expect = 0.67
Identities = 15/43 (34%), Positives = 22/43 (51%)
Frame = +1
Query: 124 FSKFGKIVNEYYPTTESGATTGFIFLEYTNPQNAAEAVKATNN 252
FS FG I + E+G + GF F+ + P+ A AV N+
Sbjct: 363 FSSFGTITSAKVMVDENGRSKGFGFVCFEKPEEATAAVTDMNS 405
>Z50110-1|CAA90444.1| 692|Caenorhabditis elegans Hypothetical
protein F18H3.3a protein.
Length = 692
Score = 35.1 bits (77), Expect = 0.031
Identities = 17/54 (31%), Positives = 29/54 (53%)
Frame = +1
Query: 103 QSVINKIFSKFGKIVNEYYPTTESGATTGFIFLEYTNPQNAAEAVKATNNCKLD 264
Q ++ +FSKFG+I + T G GF F+ + + A +AV+ N+ L+
Sbjct: 251 QEKLSAMFSKFGEITSAVVMTDAQGKPKGFGFVAFADQDAAGQAVEKLNDSILE 304
Score = 30.7 bits (66), Expect = 0.67
Identities = 15/43 (34%), Positives = 22/43 (51%)
Frame = +1
Query: 124 FSKFGKIVNEYYPTTESGATTGFIFLEYTNPQNAAEAVKATNN 252
FS FG I + E+G + GF F+ + P+ A AV N+
Sbjct: 363 FSSFGTITSAKVMVDENGRSKGFGFVCFEKPEEATAAVTDMNS 405
>U21320-5|AAA62536.2| 332|Caenorhabditis elegans Rnp (rrm rna
binding domain) containingprotein 7 protein.
Length = 332
Score = 33.5 bits (73), Expect = 0.095
Identities = 18/63 (28%), Positives = 29/63 (46%)
Frame = +1
Query: 76 VGPERLEKLQSVINKIFSKFGKIVNEYYPTTESGATTGFIFLEYTNPQNAAEAVKATNNC 255
VG E +S + + F +GKI E+G G+ F+EY++ A K +
Sbjct: 108 VGRINYETSESKLRREFEAYGKIKKLTMVHDEAGKPRGYAFIEYSDKAEMHTAYKKADGI 167
Query: 256 KLD 264
K+D
Sbjct: 168 KVD 170
>AL137227-1|CAB70238.2| 611|Caenorhabditis elegans Hypothetical
protein F58D5.1 protein.
Length = 611
Score = 31.5 bits (68), Expect = 0.38
Identities = 20/73 (27%), Positives = 34/73 (46%), Gaps = 1/73 (1%)
Frame = +1
Query: 76 VGPERLEKLQSVINKIFSKFGKIVN-EYYPTTESGATTGFIFLEYTNPQNAAEAVKATNN 252
VG + + + +F K GKI + SGA+ G+ F+ Y N ++AA A K +
Sbjct: 204 VGHIPTDVFEDTLVPLFEKSGKIWDLRLMMDPMSGASRGYAFVTYCNKEDAAAAAKTYDG 263
Query: 253 CKLDKQHTFLVNL 291
++ VN+
Sbjct: 264 HEISTGKPLKVNV 276
>Z83230-6|CAB05746.1| 336|Caenorhabditis elegans Hypothetical
protein F56A8.6 protein.
Length = 336
Score = 31.1 bits (67), Expect = 0.50
Identities = 18/63 (28%), Positives = 32/63 (50%), Gaps = 1/63 (1%)
Frame = +1
Query: 76 VGPERLEKLQSVINKIFSKFGKIVN-EYYPTTESGATTGFIFLEYTNPQNAAEAVKATNN 252
VG + + I IFSK G +++ + E+G G+ F+E+ + Q A A++ N
Sbjct: 22 VGNISYDVSEDTIRSIFSKAGNVLSIKMVHDRETGKPKGYGFIEFPDIQTAEVAIRNLNG 81
Query: 253 CKL 261
+L
Sbjct: 82 YEL 84
>Z81108-1|CAB03236.1| 83|Caenorhabditis elegans Hypothetical
protein R09B3.2 protein.
Length = 83
Score = 30.3 bits (65), Expect = 0.88
Identities = 17/64 (26%), Positives = 28/64 (43%), Gaps = 1/64 (1%)
Frame = +1
Query: 76 VGPERLEKLQSVINKIFSKFGKIVN-EYYPTTESGATTGFIFLEYTNPQNAAEAVKATNN 252
VG + + + FS G+I N E+G GF F+E+ +A AV+ N
Sbjct: 9 VGNAPFQTTEEELGNFFSSIGQINNVRIVCDRETGRPRGFAFIEFAEEGSAQRAVEQMNG 68
Query: 253 CKLD 264
+ +
Sbjct: 69 AEFN 72
>AC024791-23|AAM81102.1| 346|Caenorhabditis elegans Rnp (rrm rna
binding domain) containingprotein 6, isoform c protein.
Length = 346
Score = 30.3 bits (65), Expect = 0.88
Identities = 22/68 (32%), Positives = 32/68 (47%), Gaps = 1/68 (1%)
Frame = +1
Query: 112 INKIFSKFGKIVNEYYPTTESG-ATTGFIFLEYTNPQNAAEAVKATNNCKLDKQHTFLVN 288
+ +F FG+IV +G GF +LE+ N + +EA+ N L Q +L N
Sbjct: 223 LKSVFEAFGEIVKCQLARAPTGRGHRGFGYLEFNNLTSQSEAIAGMNMFDLGGQ--YLRN 280
Query: 289 LFTDFNKY 312
FT F Y
Sbjct: 281 -FTTFGLY 287
>U80455-1|AAB37881.1| 584|Caenorhabditis elegans Elav-type rna
binding protein familyprotein 1, isoform a protein.
Length = 584
Score = 29.9 bits (64), Expect = 1.2
Identities = 20/71 (28%), Positives = 34/71 (47%), Gaps = 1/71 (1%)
Frame = +1
Query: 112 INKIFSKFGKIVNEYYPTTESGATTGFIFLEYTNPQNAAEAVKATNNCK-LDKQHTFLVN 288
+ +IF+KFG I + + G + G F+ +TN A A K ++ + ++ LV
Sbjct: 158 LREIFAKFGHIEDCSVLRDQDGKSRGCAFVTFTNRSCAVVATKEMHHSQTMEGCSAPLVV 217
Query: 289 LFTDFNKYSDI 321
F D K D+
Sbjct: 218 KFADTQKDKDV 228
>U53931-1|AAA98566.1| 584|Caenorhabditis elegans elav-type
ribonucleoprotein protein.
Length = 584
Score = 29.9 bits (64), Expect = 1.2
Identities = 20/71 (28%), Positives = 34/71 (47%), Gaps = 1/71 (1%)
Frame = +1
Query: 112 INKIFSKFGKIVNEYYPTTESGATTGFIFLEYTNPQNAAEAVKATNNCK-LDKQHTFLVN 288
+ +IF+KFG I + + G + G F+ +TN A A K ++ + ++ LV
Sbjct: 158 LREIFAKFGHIEDCSVLRDQDGKSRGCAFVTFTNRSCAVVATKEMHHSQTMEGCSAPLVV 217
Query: 289 LFTDFNKYSDI 321
F D K D+
Sbjct: 218 KFADTQKDKDV 228
>EF523770-1|ABS18836.1| 513|Caenorhabditis elegans ELAV-type RNA
binding protein variantE protein.
Length = 513
Score = 29.9 bits (64), Expect = 1.2
Identities = 20/71 (28%), Positives = 34/71 (47%), Gaps = 1/71 (1%)
Frame = +1
Query: 112 INKIFSKFGKIVNEYYPTTESGATTGFIFLEYTNPQNAAEAVKATNNCK-LDKQHTFLVN 288
+ +IF+KFG I + + G + G F+ +TN A A K ++ + ++ LV
Sbjct: 158 LREIFAKFGHIEDCSVLRDQDGKSRGCAFVTFTNRSCAVVATKEMHHSQTMEGCSAPLVV 217
Query: 289 LFTDFNKYSDI 321
F D K D+
Sbjct: 218 KFADTQKDKDV 228
>EF523768-1|ABS18834.1| 378|Caenorhabditis elegans ELAV-type RNA
binding protein variantC protein.
Length = 378
Score = 29.9 bits (64), Expect = 1.2
Identities = 20/71 (28%), Positives = 34/71 (47%), Gaps = 1/71 (1%)
Frame = +1
Query: 112 INKIFSKFGKIVNEYYPTTESGATTGFIFLEYTNPQNAAEAVKATNNCK-LDKQHTFLVN 288
+ +IF+KFG I + + G + G F+ +TN A A K ++ + ++ LV
Sbjct: 158 LREIFAKFGHIEDCSVLRDQDGKSRGCAFVTFTNRSCAVVATKEMHHSQTMEGCSAPLVV 217
Query: 289 LFTDFNKYSDI 321
F D K D+
Sbjct: 218 KFADTQKDKDV 228
>EF523766-1|ABS18832.1| 584|Caenorhabditis elegans ELAV-type RNA
binding protein variantA protein.
Length = 584
Score = 29.9 bits (64), Expect = 1.2
Identities = 20/71 (28%), Positives = 34/71 (47%), Gaps = 1/71 (1%)
Frame = +1
Query: 112 INKIFSKFGKIVNEYYPTTESGATTGFIFLEYTNPQNAAEAVKATNNCK-LDKQHTFLVN 288
+ +IF+KFG I + + G + G F+ +TN A A K ++ + ++ LV
Sbjct: 158 LREIFAKFGHIEDCSVLRDQDGKSRGCAFVTFTNRSCAVVATKEMHHSQTMEGCSAPLVV 217
Query: 289 LFTDFNKYSDI 321
F D K D+
Sbjct: 218 KFADTQKDKDV 228
>Z81038-2|CAB02757.1| 454|Caenorhabditis elegans Hypothetical
protein C25A1.4 protein.
Length = 454
Score = 29.5 bits (63), Expect = 1.5
Identities = 14/48 (29%), Positives = 24/48 (50%)
Frame = +1
Query: 118 KIFSKFGKIVNEYYPTTESGATTGFIFLEYTNPQNAAEAVKATNNCKL 261
++F GKI + + G + G ++YT+P A +AV N +L
Sbjct: 206 EVFGMAGKITWMDFRIDKEGKSKGVCVIQYTHPIEAVQAVSMLNGQRL 253
>Z32683-11|CAA83626.1| 142|Caenorhabditis elegans Hypothetical
protein R07E5.14 protein.
Length = 142
Score = 29.5 bits (63), Expect = 1.5
Identities = 16/57 (28%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
Frame = +1
Query: 94 EKLQSVINKIFSKFGKIVNEYYPTTE-SGATTGFIFLEYTNPQNAAEAVKATNNCKL 261
E + ++ FS++GKI N + +G G+ +EY + A EA+ +N+ L
Sbjct: 65 EATEDDVHDKFSEYGKIKNIHLNLDRRTGFLKGYALVEYETQKEANEAIDQSNDTDL 121
>AL117204-22|CAB55151.1| 331|Caenorhabditis elegans Hypothetical
protein Y116A8C.34 protein.
Length = 331
Score = 29.5 bits (63), Expect = 1.5
Identities = 18/54 (33%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
Frame = +1
Query: 103 QSVINKIFSKFGKIVNEYYPTT-ESGATTGFIFLEYTNPQNAAEAVKATNNCKL 261
+ V+ F FG +V P ESG GF F+E+ ++AA A+ N +L
Sbjct: 24 EKVLMAAFIPFGDVVAISIPMDYESGKHRGFGFVEFDMAEDAAMAIDNMNESEL 77
>AL032657-5|CAD27615.1| 1045|Caenorhabditis elegans Hypothetical
protein Y47H9C.4c protein.
Length = 1045
Score = 29.5 bits (63), Expect = 1.5
Identities = 18/60 (30%), Positives = 25/60 (41%), Gaps = 8/60 (13%)
Frame = -3
Query: 494 GLSCNIKGSGNAFCHTCRLTPVPMPTRN--------WS*ASGSIRYHCRSDCTLNGWGEG 339
G+SC+ K N F C+ T P P + S GS HC +C +G+G
Sbjct: 625 GVSCDQKCDPNTFGFLCQETVTPSPCASTDPKNGVCLSCPPGSSGIHCEHNCPAGSYGDG 684
>AL032657-4|CAD27614.1| 1070|Caenorhabditis elegans Hypothetical
protein Y47H9C.4b protein.
Length = 1070
Score = 29.5 bits (63), Expect = 1.5
Identities = 18/60 (30%), Positives = 25/60 (41%), Gaps = 8/60 (13%)
Frame = -3
Query: 494 GLSCNIKGSGNAFCHTCRLTPVPMPTRN--------WS*ASGSIRYHCRSDCTLNGWGEG 339
G+SC+ K N F C+ T P P + S GS HC +C +G+G
Sbjct: 625 GVSCDQKCDPNTFGFLCQETVTPSPCASTDPKNGVCLSCPPGSSGIHCEHNCPAGSYGDG 684
>AL032657-3|CAA21739.1| 1111|Caenorhabditis elegans Hypothetical
protein Y47H9C.4a protein.
Length = 1111
Score = 29.5 bits (63), Expect = 1.5
Identities = 18/60 (30%), Positives = 25/60 (41%), Gaps = 8/60 (13%)
Frame = -3
Query: 494 GLSCNIKGSGNAFCHTCRLTPVPMPTRN--------WS*ASGSIRYHCRSDCTLNGWGEG 339
G+SC+ K N F C+ T P P + S GS HC +C +G+G
Sbjct: 625 GVSCDQKCDPNTFGFLCQETVTPSPCASTDPKNGVCLSCPPGSSGIHCEHNCPAGSYGDG 684
>AF332568-1|AAG60061.1| 1111|Caenorhabditis elegans CED-1 protein.
Length = 1111
Score = 29.5 bits (63), Expect = 1.5
Identities = 18/60 (30%), Positives = 25/60 (41%), Gaps = 8/60 (13%)
Frame = -3
Query: 494 GLSCNIKGSGNAFCHTCRLTPVPMPTRN--------WS*ASGSIRYHCRSDCTLNGWGEG 339
G+SC+ K N F C+ T P P + S GS HC +C +G+G
Sbjct: 625 GVSCDQKCDPNTFGFLCQETVTPSPCASTDPKNGVCLSCPPGSSGIHCEHNCPAGSYGDG 684
>Z68006-7|CAA91995.2| 783|Caenorhabditis elegans Hypothetical
protein K09C8.1 protein.
Length = 783
Score = 29.1 bits (62), Expect = 2.0
Identities = 19/71 (26%), Positives = 36/71 (50%), Gaps = 3/71 (4%)
Frame = -3
Query: 326 FGISEYLLKSVNRFTKNVCCLSNLQLFV---AFTASAAFWGLVYSKNMNPVVAPLSVVG* 156
FG++ +L VN+FT V +S + F+ A + LV+ + NP V +
Sbjct: 439 FGVTFFLTYFVNQFTGGVRHISFQEQFIMSYGGLRGAVSFSLVFMISANPDVKNTMLGAT 498
Query: 155 YSLTIFPNLLK 123
Y++ +F N+++
Sbjct: 499 YAVILFTNIIQ 509
>AF497831-1|AAM18109.1| 783|Caenorhabditis elegans putative Na-H
exchanger isoform 7 protein.
Length = 783
Score = 29.1 bits (62), Expect = 2.0
Identities = 19/71 (26%), Positives = 36/71 (50%), Gaps = 3/71 (4%)
Frame = -3
Query: 326 FGISEYLLKSVNRFTKNVCCLSNLQLFV---AFTASAAFWGLVYSKNMNPVVAPLSVVG* 156
FG++ +L VN+FT V +S + F+ A + LV+ + NP V +
Sbjct: 439 FGVTFFLTYFVNQFTGGVRHISFQEQFIMSYGGLRGAVSFSLVFMISANPDVKNTMLGAT 498
Query: 155 YSLTIFPNLLK 123
Y++ +F N+++
Sbjct: 499 YAVILFTNIIQ 509
>AC024791-22|AAF60676.1| 339|Caenorhabditis elegans Rnp (rrm rna
binding domain) containingprotein 6, isoform a protein.
Length = 339
Score = 28.3 bits (60), Expect = 3.6
Identities = 16/55 (29%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
Frame = +1
Query: 112 INKIFSKFGKIVNEYYPTTESG-ATTGFIFLEYTNPQNAAEAVKATNNCKLDKQH 273
+ +F FG+IV +G GF +LE+ N + +EA+ N L Q+
Sbjct: 223 LKSVFEAFGEIVKCQLARAPTGRGHRGFGYLEFNNLTSQSEAIAGMNMFDLGGQY 277
>AC024791-21|AAF60666.1| 749|Caenorhabditis elegans Rnp (rrm rna
binding domain) containingprotein 6, isoform b protein.
Length = 749
Score = 28.3 bits (60), Expect = 3.6
Identities = 16/55 (29%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
Frame = +1
Query: 112 INKIFSKFGKIVNEYYPTTESG-ATTGFIFLEYTNPQNAAEAVKATNNCKLDKQH 273
+ +F FG+IV +G GF +LE+ N + +EA+ N L Q+
Sbjct: 223 LKSVFEAFGEIVKCQLARAPTGRGHRGFGYLEFNNLTSQSEAIAGMNMFDLGGQY 277
>U41109-9|AAB37039.1| 239|Caenorhabditis elegans Hypothetical
protein F52E1.3 protein.
Length = 239
Score = 27.9 bits (59), Expect = 4.7
Identities = 16/34 (47%), Positives = 18/34 (52%)
Frame = -1
Query: 106 SEVSRGARARPVGSHRQRSHSRNHQIPLAFAPTL 5
SEV+RG RPVG H Q S QI PT+
Sbjct: 91 SEVARGPTPRPVGDHPQT--SSEEQIEATPYPTI 122
>U41106-2|AAA82410.1| 797|Caenorhabditis elegans Hypothetical
protein W06A11.2 protein.
Length = 797
Score = 27.9 bits (59), Expect = 4.7
Identities = 11/31 (35%), Positives = 19/31 (61%)
Frame = -2
Query: 132 FAKNLIYNALKFLEALGPDLWAAIDNDHILV 40
F + +I N LK + +GP LWA + + ++V
Sbjct: 725 FTRGIIQNILKTSKCIGPVLWALLTIEVLIV 755
>AL590342-2|CAC35859.3| 685|Caenorhabditis elegans Hypothetical
protein Y66A7A.5 protein.
Length = 685
Score = 27.9 bits (59), Expect = 4.7
Identities = 11/36 (30%), Positives = 21/36 (58%)
Frame = +1
Query: 289 LFTDFNKYSDIPKEWEPPSPQPFKVQSDLQWYLMDP 396
+F D + D+ +++EPP P+P Q D + ++P
Sbjct: 234 VFLDSDVKFDLIEDFEPPEPEPEPEQVDTELVKLEP 269
>AL132952-21|CAB61149.2| 706|Caenorhabditis elegans Hypothetical
protein Y51H4A.17a protein.
Length = 706
Score = 27.9 bits (59), Expect = 4.7
Identities = 11/28 (39%), Positives = 15/28 (53%)
Frame = +1
Query: 298 DFNKYSDIPKEWEPPSPQPFKVQSDLQW 381
+F + S+ P + SP P VQS L W
Sbjct: 602 NFRRMSNAPSMFGADSPSPLSVQSKLDW 629
>AL032622-4|CAA21499.1| 738|Caenorhabditis elegans Y66A7A.5
protein.
Length = 738
Score = 27.9 bits (59), Expect = 4.7
Identities = 11/36 (30%), Positives = 21/36 (58%)
Frame = +1
Query: 289 LFTDFNKYSDIPKEWEPPSPQPFKVQSDLQWYLMDP 396
+F D + D+ +++EPP P+P Q D + ++P
Sbjct: 234 VFLDSDVKFDLIEDFEPPEPEPEPEQVDTELVKLEP 269
>Z81108-4|CAB03237.1| 85|Caenorhabditis elegans Hypothetical
protein R09B3.3 protein.
Length = 85
Score = 27.5 bits (58), Expect = 6.2
Identities = 17/59 (28%), Positives = 25/59 (42%), Gaps = 1/59 (1%)
Frame = +1
Query: 76 VGPERLEKLQSVINKIFSKFGKIVN-EYYPTTESGATTGFIFLEYTNPQNAAEAVKATN 249
VG + + + FS+ G + N E+G GF F+E+T A AV N
Sbjct: 8 VGNAPFQTTEDDLGNYFSQAGNVSNVRIVCDRETGRPRGFAFVEFTEEAAAQRAVDQFN 66
>Z81052-6|CAB02874.1| 336|Caenorhabditis elegans Hypothetical
protein D2023.7 protein.
Length = 336
Score = 27.1 bits (57), Expect = 8.2
Identities = 16/53 (30%), Positives = 24/53 (45%), Gaps = 2/53 (3%)
Frame = +1
Query: 238 KATNNCKLDKQHTFLVNLFTDFNKYSDIPKEWEPPSPQ--PFKVQSDLQWYLM 390
KAT T +++L+ F+ YSD+ W + FKV +D W M
Sbjct: 5 KATAGALCLSSATLILSLYAIFSIYSDVQSIWSQLDQEMDQFKVTTDDLWTQM 57
>Z66498-2|CAA91291.2| 419|Caenorhabditis elegans Hypothetical
protein M195.2 protein.
Length = 419
Score = 27.1 bits (57), Expect = 8.2
Identities = 15/52 (28%), Positives = 20/52 (38%)
Frame = -3
Query: 491 LSCNIKGSGNAFCHTCRLTPVPMPTRNWS*ASGSIRYHCRSDCTLNGWGEGG 336
++C S N C +P+P + AS S CRS C GG
Sbjct: 1 MACKCSTSTNISNRVCSCSPLPSTSSCGCQASSSCANSCRSTCRPTCSSSGG 52
>U50313-4|AAA92328.1| 417|Caenorhabditis elegans Hypothetical
protein F44C4.2 protein.
Length = 417
Score = 27.1 bits (57), Expect = 8.2
Identities = 10/17 (58%), Positives = 10/17 (58%)
Frame = -3
Query: 485 CNIKGSGNAFCHTCRLT 435
CNI G G C CRLT
Sbjct: 50 CNIDGRGRYVCRQCRLT 66
>EF523769-1|ABS18835.1| 327|Caenorhabditis elegans ELAV-type RNA
binding protein variantD protein.
Length = 327
Score = 27.1 bits (57), Expect = 8.2
Identities = 14/43 (32%), Positives = 22/43 (51%)
Frame = +1
Query: 112 INKIFSKFGKIVNEYYPTTESGATTGFIFLEYTNPQNAAEAVK 240
+ +IF+KFG I + + G + G F+ +TN A A K
Sbjct: 158 LREIFAKFGHIEDCSVLRDQDGKSRGCAFVTFTNRSCAVVATK 200
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.315 0.134 0.416
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,881,638
Number of Sequences: 27780
Number of extensions: 316424
Number of successful extensions: 762
Number of sequences better than 10.0: 35
Number of HSP's better than 10.0 without gapping: 737
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 757
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1028310386
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)
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