Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0007_J05
(163 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC1494.05c |ubp12||ubiquitin C-terminal hydrolase Ubp12|Schizo... 25 1.0
SPAC23A1.15c |sec20||SNARE Sec20|Schizosaccharomyces pombe|chr 1... 24 3.1
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ... 23 5.4
SPBC21C3.07c |||actin binding methyltransferase |Schizosaccharom... 23 5.4
SPBC56F2.09c |arg5||arginine specific carbamoyl-phosphate syntha... 23 7.2
SPBC887.17 |||uracil permease |Schizosaccharomyces pombe|chr 2||... 23 7.2
SPAC1006.06 |rgf2||RhoGEF Rgf2|Schizosaccharomyces pombe|chr 1||... 23 7.2
SPBC25D12.04 |suc22||ribonucleotide reductase small subunit Suc2... 23 7.2
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual 22 9.5
SPAC328.04 |||AAA family ATPase, unknown biological role|Schizos... 22 9.5
SPBC1703.02 |rsc9||RSC complex subunit Rsc9|Schizosaccharomyces ... 22 9.5
>SPCC1494.05c |ubp12||ubiquitin C-terminal hydrolase
Ubp12|Schizosaccharomyces pombe|chr 3|||Manual
Length = 979
Score = 25.4 bits (53), Expect = 1.0
Identities = 12/27 (44%), Positives = 17/27 (62%)
Frame = -1
Query: 157 TLKYAKTSSYHDQ*ARFVSEGSHSAGN 77
+L + TSSYH + R +SE S S+ N
Sbjct: 3 SLSESSTSSYHGKRPRSLSEESQSSSN 29
>SPAC23A1.15c |sec20||SNARE Sec20|Schizosaccharomyces pombe|chr
1|||Manual
Length = 226
Score = 23.8 bits (49), Expect = 3.1
Identities = 9/24 (37%), Positives = 15/24 (62%)
Frame = +2
Query: 8 ADLNDILLRVSAFGLFVYAVFCII 79
+D +D L VS FG F++ V ++
Sbjct: 186 SDRSDYFLVVSGFGFFIFVVVYLL 209
>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1420
Score = 23.0 bits (47), Expect = 5.4
Identities = 14/41 (34%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
Frame = -2
Query: 144 LRHPVIMTSKLGS*VKAPIPPAIMQKTAYTKSPN-AETRSK 25
L PV + + + + V P PPA K K+P+ TR K
Sbjct: 886 LAAPVAVPAPIPAPVAEPAPPAAPAKEVVEKAPSPPATRPK 926
>SPBC21C3.07c |||actin binding methyltransferase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 281
Score = 23.0 bits (47), Expect = 5.4
Identities = 8/16 (50%), Positives = 12/16 (75%)
Frame = +3
Query: 66 FSALLPAEWEPSLTNL 113
FSAL P +W+ ++ NL
Sbjct: 200 FSALSPDQWQQAIENL 215
>SPBC56F2.09c |arg5||arginine specific carbamoyl-phosphate synthase
Arg5 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 415
Score = 22.6 bits (46), Expect = 7.2
Identities = 8/15 (53%), Positives = 12/15 (80%)
Frame = +3
Query: 69 SALLPAEWEPSLTNL 113
++ LPAEW+ + TNL
Sbjct: 350 ASTLPAEWKATWTNL 364
>SPBC887.17 |||uracil permease |Schizosaccharomyces pombe|chr
2|||Manual
Length = 625
Score = 22.6 bits (46), Expect = 7.2
Identities = 9/34 (26%), Positives = 17/34 (50%)
Frame = +2
Query: 38 SAFGLFVYAVFCIIAGGMGAFTHEPSLLVMITGC 139
+ GL++ + + G+G H S +V + GC
Sbjct: 192 AGIGLYLTIIGLSPSAGLGVIGHSSSDIVALGGC 225
>SPAC1006.06 |rgf2||RhoGEF Rgf2|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1158
Score = 22.6 bits (46), Expect = 7.2
Identities = 10/30 (33%), Positives = 15/30 (50%)
Frame = -1
Query: 115 ARFVSEGSHSAGNNAENSVHEKSKCRNTKQ 26
A+F E S N N VHE + R +++
Sbjct: 550 AKFEFEREKSTNRNFANYVHEVERLRESRK 579
>SPBC25D12.04 |suc22||ribonucleotide reductase small subunit Suc22
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 391
Score = 22.6 bits (46), Expect = 7.2
Identities = 8/13 (61%), Positives = 10/13 (76%)
Frame = +3
Query: 39 LHLDFSCTLFSAL 77
LH DF+C +FS L
Sbjct: 265 LHTDFACLMFSHL 277
>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
Length = 4717
Score = 22.2 bits (45), Expect = 9.5
Identities = 10/27 (37%), Positives = 15/27 (55%)
Frame = -1
Query: 130 YHDQ*ARFVSEGSHSAGNNAENSVHEK 50
Y +Q VSE H+ + ENS+ E+
Sbjct: 3325 YFEQFLSKVSEAIHTQKQSLENSIKER 3351
>SPAC328.04 |||AAA family ATPase, unknown biological
role|Schizosaccharomyces pombe|chr 1|||Manual
Length = 741
Score = 22.2 bits (45), Expect = 9.5
Identities = 10/31 (32%), Positives = 18/31 (58%)
Frame = -2
Query: 96 APIPPAIMQKTAYTKSPNAETRSKMSLRSAS 4
A + P++ ++ TKSP+ +S +SAS
Sbjct: 322 ATVAPSLASVSSVTKSPSPTPQSAPRAQSAS 352
>SPBC1703.02 |rsc9||RSC complex subunit Rsc9|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 780
Score = 22.2 bits (45), Expect = 9.5
Identities = 10/18 (55%), Positives = 10/18 (55%)
Frame = +1
Query: 28 ASCFCIWTFRVRCFLHYC 81
AS C TF FLHYC
Sbjct: 348 ASIRCAKTFNNLEFLHYC 365
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 667,809
Number of Sequences: 5004
Number of extensions: 9268
Number of successful extensions: 37
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 37
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 37
length of database: 2,362,478
effective HSP length: 34
effective length of database: 2,192,342
effective search space used: 41654498
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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