Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0007_J05
         (163 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_0682 - 5244805-5244919,5246468-5246613,5246813-5246994,524...    28   0.89 
03_01_0581 + 4310136-4310186,4310940-4311144,4311245-4311410,431...    28   1.2  
01_05_0610 - 23636097-23638958                                         26   4.7  
01_01_1168 - 9305084-9307172,9307751-9308460,9308624-9308821           26   4.7  
03_06_0145 - 31973924-31975837                                         25   6.3  
07_01_0404 + 3093851-3094051,3094622-3094948,3096685-3096798,309...    25   8.3  
07_01_0400 + 3048607-3048807,3049378-3049704,3051441-3051554,305...    25   8.3  
07_01_0396 + 3016900-3017175,3017926-3018039,3018138-3018350,301...    25   8.3  
05_03_0577 + 15671570-15672432,15672571-15672785,15672825-156729...    25   8.3  

>01_01_0682 -
           5244805-5244919,5246468-5246613,5246813-5246994,
           5247069-5247295,5247382-5247467,5247564-5247656,
           5247964-5248118,5248407-5248490,5248589-5248768,
           5249587-5249828,5249927-5249982
          Length = 521

 Score = 28.3 bits (60), Expect = 0.89
 Identities = 13/40 (32%), Positives = 25/40 (62%)
 Frame = +2

Query: 2   HEADLNDILLRVSAFGLFVYAVFCIIAGGMGAFTHEPSLL 121
           H AD + +LL+ + FGL ++   C I+G +   T++ ++L
Sbjct: 449 HGADFHMLLLQRAMFGLSLWMAMC-ISGSLNLLTNDRTVL 487


>03_01_0581 +
           4310136-4310186,4310940-4311144,4311245-4311410,
           4312035-4312257,4312891-4312967,4313091-4313278,
           4313363-4313457,4313674-4313807,4313914-4314024,
           4314304-4314619,4314919-4315040,4315183-4315293,
           4315824-4316012,4316105-4316263,4316449-4316530,
           4317080-4317190
          Length = 779

 Score = 27.9 bits (59), Expect = 1.2
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = -1

Query: 88  SAGNNAENSVHEKSKCRNTKQDVVEI 11
           S+GN+ E  ++E+S   N+  DVV I
Sbjct: 704 SSGNSCEEEIYERSSLINSPMDVVSI 729


>01_05_0610 - 23636097-23638958
          Length = 953

 Score = 25.8 bits (54), Expect = 4.7
 Identities = 14/24 (58%), Positives = 15/24 (62%)
 Frame = +3

Query: 42  HLDFSCTLFSALLPAEWEPSLTNL 113
           HLD SC  FS  LP E+  SL NL
Sbjct: 120 HLDLSCNNFSGTLP-EFLGSLHNL 142


>01_01_1168 - 9305084-9307172,9307751-9308460,9308624-9308821
          Length = 998

 Score = 25.8 bits (54), Expect = 4.7
 Identities = 10/30 (33%), Positives = 15/30 (50%)
 Frame = -1

Query: 127 HDQ*ARFVSEGSHSAGNNAENSVHEKSKCR 38
           HD+  R    G+H++       VH+K  CR
Sbjct: 569 HDKIRRLSVHGAHTSQGKQAGGVHDKHLCR 598


>03_06_0145 - 31973924-31975837
          Length = 637

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 14/36 (38%), Positives = 17/36 (47%)
 Frame = -2

Query: 135 PVIMTSKLGS*VKAPIPPAIMQKTAYTKSPNAETRS 28
           PVI   K  S    P PPA+M   A T  P  + R+
Sbjct: 425 PVIDEHKSKSGDAPPTPPAVMVSPAATSPPPLDART 460


>07_01_0404 +
           3093851-3094051,3094622-3094948,3096685-3096798,
           3096897-3097109,3097975-3098151,3098270-3100091,
           3100107-3100927,3101070-3101390
          Length = 1331

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 13/33 (39%), Positives = 16/33 (48%)
 Frame = -1

Query: 106 VSEGSHSAGNNAENSVHEKSKCRNTKQDVVEIC 8
           +  GSH A    E SV  + +  NT QD  E C
Sbjct: 523 LKSGSHEAELQQEWSVPSQKELLNTTQDREETC 555


>07_01_0400 +
           3048607-3048807,3049378-3049704,3051441-3051554,
           3051653-3051865,3052731-3052907,3053026-3054847,
           3054863-3055683,3055826-3056146
          Length = 1331

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 13/33 (39%), Positives = 16/33 (48%)
 Frame = -1

Query: 106 VSEGSHSAGNNAENSVHEKSKCRNTKQDVVEIC 8
           +  GSH A    E SV  + +  NT QD  E C
Sbjct: 523 LKSGSHEAELQQEWSVPSQKELLNTTQDREETC 555


>07_01_0396 +
           3016900-3017175,3017926-3018039,3018138-3018350,
           3019216-3019392,3019511-3021332,3021348-3022168,
           3022311-3022631
          Length = 1247

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 13/33 (39%), Positives = 16/33 (48%)
 Frame = -1

Query: 106 VSEGSHSAGNNAENSVHEKSKCRNTKQDVVEIC 8
           +  GSH A    E SV  + +  NT QD  E C
Sbjct: 439 LKSGSHEAELQQEWSVPSQKELLNTTQDREETC 471


>05_03_0577 +
           15671570-15672432,15672571-15672785,15672825-15672954,
           15672990-15673794,15674505-15674715,15674829-15675436
          Length = 943

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 13/33 (39%), Positives = 19/33 (57%)
 Frame = -2

Query: 102 VKAPIPPAIMQKTAYTKSPNAETRSKMSLRSAS 4
           VK PIP   ++++A  K P+A    K S  S+S
Sbjct: 646 VKPPIPAKKLEQSAQKKPPSAPKPRKGSSSSSS 678


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,484,466
Number of Sequences: 37544
Number of extensions: 65786
Number of successful extensions: 285
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 284
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 284
length of database: 14,793,348
effective HSP length: 34
effective length of database: 13,516,852
effective search space used: 256820188
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)