Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0007_J05
         (163 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U40416-1|AAA81410.2|  822|Caenorhabditis elegans Protein kinase ...    31   0.15 
AF403714-1|AAK97497.1|  822|Caenorhabditis elegans serine/threon...    31   0.15 
U46669-3|AAA85744.2|  737|Caenorhabditis elegans Regulator of g ...    25   7.2  
U43283-3|AAC69024.2|  880|Caenorhabditis elegans Hypothetical pr...    25   9.6  
U41508-1|AAG00027.3|  944|Caenorhabditis elegans Set (trithorax/...    25   9.6  
U29614-2|AAM54190.1| 1020|Caenorhabditis elegans Temporarily ass...    25   9.6  
U29614-1|AAM54191.1| 1061|Caenorhabditis elegans Temporarily ass...    25   9.6  

>U40416-1|AAA81410.2|  822|Caenorhabditis elegans Protein kinase
           protein 29 protein.
          Length = 822

 Score = 30.7 bits (66), Expect = 0.15
 Identities = 17/39 (43%), Positives = 24/39 (61%)
 Frame = -2

Query: 120 SKLGS*VKAPIPPAIMQKTAYTKSPNAETRSKMSLRSAS 4
           ++LG  ++ PIP    Q+T YTK+P AE RS  +  S S
Sbjct: 569 NQLGGGIQNPIPR--YQRTPYTKAPPAERRSSWASPSLS 605


>AF403714-1|AAK97497.1|  822|Caenorhabditis elegans serine/threonine
           kinase KIN-29 protein.
          Length = 822

 Score = 30.7 bits (66), Expect = 0.15
 Identities = 17/39 (43%), Positives = 24/39 (61%)
 Frame = -2

Query: 120 SKLGS*VKAPIPPAIMQKTAYTKSPNAETRSKMSLRSAS 4
           ++LG  ++ PIP    Q+T YTK+P AE RS  +  S S
Sbjct: 569 NQLGGGIQNPIPR--YQRTPYTKAPPAERRSSWASPSLS 605


>U46669-3|AAA85744.2|  737|Caenorhabditis elegans Regulator of g
           protein signalingprotein 6 protein.
          Length = 737

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 12/42 (28%), Positives = 22/42 (52%)
 Frame = -2

Query: 144 LRHPVIMTSKLGS*VKAPIPPAIMQKTAYTKSPNAETRSKMS 19
           +RHP I ++K+G    A    A    +A + S + +T++  S
Sbjct: 631 IRHPAIFSTKIGDEAAAAAAGASPSTSAPSTSTSVQTKTTTS 672


>U43283-3|AAC69024.2|  880|Caenorhabditis elegans Hypothetical
           protein T25G12.6 protein.
          Length = 880

 Score = 24.6 bits (51), Expect = 9.6
 Identities = 13/31 (41%), Positives = 16/31 (51%)
 Frame = -2

Query: 120 SKLGS*VKAPIPPAIMQKTAYTKSPNAETRS 28
           SK  S   AP PP   Q + YT   + +TRS
Sbjct: 60  SKNNSAHPAPTPPVSTQASGYTMFLSVQTRS 90


>U41508-1|AAG00027.3|  944|Caenorhabditis elegans Set
           (trithorax/polycomb) domaincontaining protein 19
           protein.
          Length = 944

 Score = 24.6 bits (51), Expect = 9.6
 Identities = 9/28 (32%), Positives = 17/28 (60%)
 Frame = -2

Query: 96  APIPPAIMQKTAYTKSPNAETRSKMSLR 13
           +PIP  + Q++   +SP +E R++   R
Sbjct: 620 SPIPARVRQRSPEVQSPKSEMRTRSRAR 647


>U29614-2|AAM54190.1| 1020|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 279, isoform a protein.
          Length = 1020

 Score = 24.6 bits (51), Expect = 9.6
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = -2

Query: 87  PPAIMQKTAYTKSPNAETRSKM 22
           PP    K AYTK+PN   + +M
Sbjct: 337 PPIPRTKRAYTKNPNTIRKRRM 358


>U29614-1|AAM54191.1| 1061|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 279, isoform b protein.
          Length = 1061

 Score = 24.6 bits (51), Expect = 9.6
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = -2

Query: 87  PPAIMQKTAYTKSPNAETRSKM 22
           PP    K AYTK+PN   + +M
Sbjct: 378 PPIPRTKRAYTKNPNTIRKRRM 399


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,754,217
Number of Sequences: 27780
Number of extensions: 54151
Number of successful extensions: 175
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 173
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 175
length of database: 12,740,198
effective HSP length: 34
effective length of database: 11,795,678
effective search space used: 224117882
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)