Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0007_J05
         (163 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    23   0.26 
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    23   0.26 
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              21   1.0  
DQ384991-1|ABD51779.1|   94|Apis mellifera allergen Api m 6 vari...    21   1.8  
S76957-1|AAB33932.1|  169|Apis mellifera olfactory receptor prot...    20   2.4  
DQ384990-1|ABD51778.1|   92|Apis mellifera allergen Api m 6 vari...    20   2.4  
AB013287-1|BAA87893.1|  190|Apis mellifera calmodulin kinase II ...    20   3.2  
DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.          19   4.2  
AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor ...    19   4.2  
AB095514-1|BAC76336.1|   72|Apis mellifera ecdyson receptor prot...    19   4.2  
DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chlor...    19   7.4  
DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chlor...    19   7.4  
AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.      19   7.4  
DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein pr...    18   9.8  
AY569713-1|AAS86666.1|  401|Apis mellifera feminizer protein.          18   9.8  
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    18   9.8  

>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 23.4 bits (48), Expect = 0.26
 Identities = 8/27 (29%), Positives = 15/27 (55%)
 Frame = +2

Query: 20  DILLRVSAFGLFVYAVFCIIAGGMGAF 100
           ++ + +  F  ++  +FCI  GGM  F
Sbjct: 416 ELFIAIVCFVSYLIGLFCITEGGMYVF 442


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 23.4 bits (48), Expect = 0.26
 Identities = 8/27 (29%), Positives = 15/27 (55%)
 Frame = +2

Query: 20  DILLRVSAFGLFVYAVFCIIAGGMGAF 100
           ++ + +  F  ++  +FCI  GGM  F
Sbjct: 469 ELFIAIVCFVSYLIGLFCITEGGMYVF 495


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.4 bits (43), Expect = 1.0
 Identities = 9/14 (64%), Positives = 10/14 (71%)
 Frame = -2

Query: 78   IMQKTAYTKSPNAE 37
            I Q T YTK+ NAE
Sbjct: 1210 ITQYTVYTKADNAE 1223


>DQ384991-1|ABD51779.1|   94|Apis mellifera allergen Api m 6 variant
           2 precursor protein.
          Length = 94

 Score = 20.6 bits (41), Expect = 1.8
 Identities = 8/23 (34%), Positives = 12/23 (52%)
 Frame = +2

Query: 32  RVSAFGLFVYAVFCIIAGGMGAF 100
           R+      + AVF ++ GG G F
Sbjct: 3   RLVLASFLLLAVFSMLVGGFGGF 25


>S76957-1|AAB33932.1|  169|Apis mellifera olfactory receptor
           protein.
          Length = 169

 Score = 20.2 bits (40), Expect = 2.4
 Identities = 10/21 (47%), Positives = 16/21 (76%)
 Frame = +2

Query: 62  AVFCIIAGGMGAFTHEPSLLV 124
           AVF I+AG +G F+  P++L+
Sbjct: 78  AVF-IVAGAVGVFS-SPTILI 96


>DQ384990-1|ABD51778.1|   92|Apis mellifera allergen Api m 6 variant
           1 precursor protein.
          Length = 92

 Score = 20.2 bits (40), Expect = 2.4
 Identities = 7/23 (30%), Positives = 12/23 (52%)
 Frame = +2

Query: 32  RVSAFGLFVYAVFCIIAGGMGAF 100
           R+      + A+F ++ GG G F
Sbjct: 3   RLVLASFLLLAIFSMLVGGFGGF 25


>AB013287-1|BAA87893.1|  190|Apis mellifera calmodulin kinase II
           protein.
          Length = 190

 Score = 19.8 bits (39), Expect = 3.2
 Identities = 5/11 (45%), Positives = 8/11 (72%)
 Frame = +1

Query: 70  LHYCRRNGSLH 102
           +H+C  NG +H
Sbjct: 22  VHHCHHNGVVH 32


>DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.
          Length = 495

 Score = 19.4 bits (38), Expect = 4.2
 Identities = 8/11 (72%), Positives = 9/11 (81%)
 Frame = -1

Query: 76 NAENSVHEKSK 44
          NA+NSVH  SK
Sbjct: 21 NADNSVHILSK 31


>AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor A
           isoform protein.
          Length = 567

 Score = 19.4 bits (38), Expect = 4.2
 Identities = 6/18 (33%), Positives = 11/18 (61%)
 Frame = -1

Query: 82  GNNAENSVHEKSKCRNTK 29
           GNN E  ++ + KC+  +
Sbjct: 226 GNNCEIDMYMRRKCQECR 243


>AB095514-1|BAC76336.1|   72|Apis mellifera ecdyson receptor
          protein.
          Length = 72

 Score = 19.4 bits (38), Expect = 4.2
 Identities = 6/18 (33%), Positives = 11/18 (61%)
 Frame = -1

Query: 82 GNNAENSVHEKSKCRNTK 29
          GNN E  ++ + KC+  +
Sbjct: 23 GNNCEIDMYMRRKCQECR 40


>DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 18.6 bits (36), Expect = 7.4
 Identities = 6/6 (100%), Positives = 6/6 (100%)
 Frame = +3

Query: 108 NLAYWS 125
           NLAYWS
Sbjct: 431 NLAYWS 436


>DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 18.6 bits (36), Expect = 7.4
 Identities = 6/6 (100%), Positives = 6/6 (100%)
 Frame = +3

Query: 108 NLAYWS 125
           NLAYWS
Sbjct: 431 NLAYWS 436


>AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.
          Length = 366

 Score = 18.6 bits (36), Expect = 7.4
 Identities = 8/33 (24%), Positives = 15/33 (45%)
 Frame = +3

Query: 6   RQISTTSCFVFLHLDFSCTLFSALLPAEWEPSL 104
           R+I+++SC    H   S       +  +W  +L
Sbjct: 334 REITSSSCSYMAHEKLSYAFSVWRMEDDWNSNL 366


>DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein
           protein.
          Length = 484

 Score = 18.2 bits (35), Expect = 9.8
 Identities = 7/11 (63%), Positives = 8/11 (72%)
 Frame = +2

Query: 86  GMGAFTHEPSL 118
           GMG F  +PSL
Sbjct: 99  GMGEFLIDPSL 109


>AY569713-1|AAS86666.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 18.2 bits (35), Expect = 9.8
 Identities = 11/42 (26%), Positives = 17/42 (40%)
 Frame = -1

Query: 148 YAKTSSYHDQ*ARFVSEGSHSAGNNAENSVHEKSKCRNTKQD 23
           + +TSS H +      E  +S  N+ E S          K+D
Sbjct: 224 FQRTSSCHSRYEDLRHEDRNSYRNDGERSCSRDRSREYKKKD 265


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 18.2 bits (35), Expect = 9.8
 Identities = 7/17 (41%), Positives = 9/17 (52%)
 Frame = +3

Query: 60  TLFSALLPAEWEPSLTN 110
           T+F  + P  W   LTN
Sbjct: 227 TIFVPVKPCPWICELTN 243


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 43,577
Number of Sequences: 438
Number of extensions: 589
Number of successful extensions: 16
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 146,343
effective HSP length: 33
effective length of database: 131,889
effective search space used:  2637780
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 35 (18.9 bits)