Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0007_J04
(418 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC830.03 |||AAA family ATPase Grc3 |Schizosaccharomyces pombe|... 27 1.5
SPAC1250.01 |snf21|SPAC29A4.21|ATP-dependent DNA helicase Snf21|... 26 2.0
SPAPB1A10.08 |||sequence orphan|Schizosaccharomyces pombe|chr 1|... 26 2.7
SPAC959.08 |rpl2102|rpl21-2, rpl21|60S ribosomal protein L21|Sch... 25 3.6
SPBC428.17c |||conserved fungal protein|Schizosaccharomyces pomb... 25 3.6
SPBC365.03c |rpl2101|rpl21, rpl21-1|60S ribosomal protein L21|Sc... 25 3.6
SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein homolog|Schi... 25 3.6
SPBC119.14 |rti1||Rad22 homolog Rti1|Schizosaccharomyces pombe|c... 25 4.7
SPCC417.08 |tef3||translation elongation factor eEF3|Schizosacch... 25 4.7
SPBC1271.02 |stt3||oligosaccharyltransferase subunit Stt3|Schizo... 25 6.2
SPAC2F3.10 |||GARP complex subunit Vps54 |Schizosaccharomyces po... 25 6.2
SPAC1296.06 |||NADPH cytochrome reductase|Schizosaccharomyces po... 24 8.2
SPCC1620.11 |mug87||nucleoporin Nic96 homolog|Schizosaccharomyce... 24 8.2
SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces pomb... 24 8.2
>SPCC830.03 |||AAA family ATPase Grc3 |Schizosaccharomyces pombe|chr
3|||Manual
Length = 736
Score = 26.6 bits (56), Expect = 1.5
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = +1
Query: 25 KSLLPTYMLETGKGDIETNEIPDNTV 102
+ L PTYML GDI + PD+ +
Sbjct: 396 RMLFPTYMLRLHLGDISPQKDPDHYI 421
>SPAC1250.01 |snf21|SPAC29A4.21|ATP-dependent DNA helicase
Snf21|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1199
Score = 26.2 bits (55), Expect = 2.0
Identities = 15/46 (32%), Positives = 24/46 (52%)
Frame = +1
Query: 79 NEIPDNTVNGRPVKHHGSKPGSVCVICEFVLKQIDDEIKDKHNEDE 216
+E P T+NG+P K G P ++ +L+++ EI NE E
Sbjct: 1036 DETPALTLNGKPKKKRGPAPDTLTSEHRSLLRRVCLEIYKAVNELE 1081
>SPAPB1A10.08 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 412
Score = 25.8 bits (54), Expect = 2.7
Identities = 17/37 (45%), Positives = 24/37 (64%), Gaps = 1/37 (2%)
Frame = +2
Query: 116 SNITDQNRVQFALSVNSYSNRLTMRSKTNITRM-KSR 223
SN+T NR +LS N YS+RL+ KT++ + KSR
Sbjct: 235 SNLTACNRSGSSLSSNFYSSRLS--KKTSLASLNKSR 269
>SPAC959.08 |rpl2102|rpl21-2, rpl21|60S ribosomal protein
L21|Schizosaccharomyces pombe|chr 1|||Manual
Length = 160
Score = 25.4 bits (53), Expect = 3.6
Identities = 17/77 (22%), Positives = 32/77 (41%), Gaps = 5/77 (6%)
Frame = +1
Query: 34 LPTYMLETGKGDIETNEIPDNTVNGRPVKHHGSKPGSVCVICE-----FVLKQIDDEIKD 198
L TY+ GDI ++ G P K++ K G V + + + K + + +
Sbjct: 27 LSTYLKTYKVGDIVDIKVNGAVQKGMPHKYYHGKTGVVYNVTQSSVGVLIYKVVGNRYME 86
Query: 199 KHNEDEIKKIVHGVCKR 249
K I+ + H C++
Sbjct: 87 KRVNVRIEHVKHSKCRQ 103
>SPBC428.17c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 602
Score = 25.4 bits (53), Expect = 3.6
Identities = 14/36 (38%), Positives = 20/36 (55%)
Frame = +1
Query: 238 VCKRMPKSVKSECDQFVEKYADLVISLLAQELEPSE 345
+ K +PKSVK +FV K A+L S + L S+
Sbjct: 287 LAKSLPKSVKGAVQEFVIK-AELTFSFSNESLASSD 321
>SPBC365.03c |rpl2101|rpl21, rpl21-1|60S ribosomal protein
L21|Schizosaccharomyces pombe|chr 2|||Manual
Length = 160
Score = 25.4 bits (53), Expect = 3.6
Identities = 17/77 (22%), Positives = 32/77 (41%), Gaps = 5/77 (6%)
Frame = +1
Query: 34 LPTYMLETGKGDIETNEIPDNTVNGRPVKHHGSKPGSVCVICE-----FVLKQIDDEIKD 198
L TY+ GDI ++ G P K++ K G V + + + K + + +
Sbjct: 27 LSTYLKTYKVGDIVDIKVNGAVQKGMPHKYYHGKTGVVYNVTQSSVGVLIYKVVGNRYME 86
Query: 199 KHNEDEIKKIVHGVCKR 249
K I+ + H C++
Sbjct: 87 KRVNVRIEHVKHSKCRQ 103
>SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein
homolog|Schizosaccharomyces pombe|chr 2|||Manual
Length = 3071
Score = 25.4 bits (53), Expect = 3.6
Identities = 12/42 (28%), Positives = 21/42 (50%)
Frame = +1
Query: 292 KYADLVISLLAQELEPSEVCTELKLCKPSIPNFDSVTGEILD 417
KYA +++ L E++ L+ K S+P TG++ D
Sbjct: 2606 KYATILLQELTIEIDEDFAFAALEYIKDSVPRSKRNTGKMFD 2647
>SPBC119.14 |rti1||Rad22 homolog Rti1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 371
Score = 25.0 bits (52), Expect = 4.7
Identities = 9/28 (32%), Positives = 16/28 (57%)
Frame = +1
Query: 265 KSECDQFVEKYADLVISLLAQELEPSEV 348
+S C++F + D + LLA +L P +
Sbjct: 7 QSSCEEFTDSQQDKMTKLLAMQLGPEYI 34
>SPCC417.08 |tef3||translation elongation factor
eEF3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1047
Score = 25.0 bits (52), Expect = 4.7
Identities = 21/74 (28%), Positives = 34/74 (45%), Gaps = 1/74 (1%)
Frame = +1
Query: 70 IETNEIPDNTVNGR-PVKHHGSKPGSVCVICEFVLKQIDDEIKDKHNEDEIKKIVHGVCK 246
I T E N V+G+ P + P +C LK + EIK NE+ I K V +
Sbjct: 319 ITTLERVGNVVDGKIPEVSTAANPE----VCLETLKAVLGEIKVPTNEEVIAKYVANIAA 374
Query: 247 RMPKSVKSECDQFV 288
++ + +E + +V
Sbjct: 375 QLVEEKDNENESWV 388
>SPBC1271.02 |stt3||oligosaccharyltransferase subunit
Stt3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 752
Score = 24.6 bits (51), Expect = 6.2
Identities = 10/32 (31%), Positives = 17/32 (53%)
Frame = -2
Query: 138 RF*SVMFDGTTVYCIVWNLVSFDIAFAGFKHV 43
R+ S ++ T Y ++ L S + F GF+ V
Sbjct: 237 RYTSKLYIAYTTYYVIGTLASMQVPFVGFQPV 268
>SPAC2F3.10 |||GARP complex subunit Vps54 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 949
Score = 24.6 bits (51), Expect = 6.2
Identities = 22/102 (21%), Positives = 43/102 (42%)
Frame = +1
Query: 103 NGRPVKHHGSKPGSVCVICEFVLKQIDDEIKDKHNEDEIKKIVHGVCKRMPKSVKSECDQ 282
N KH K V V+C+ + I E H ++KK+V + + K D
Sbjct: 258 NVEETKHLLEKLTEVNVMCDRHMDAISSEELACHQLTQLKKVVQTLEDIYSEHKKVSEDV 317
Query: 283 FVEKYADLVISLLAQELEPSEVCTELKLCKPSIPNFDSVTGE 408
+++ + + + + + + TEL + S+P+ S+ E
Sbjct: 318 KDQRFLEAINGINSIVTQLKKKSTELNVDLLSLPSVKSLREE 359
>SPAC1296.06 |||NADPH cytochrome reductase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 558
Score = 24.2 bits (50), Expect = 8.2
Identities = 14/37 (37%), Positives = 17/37 (45%)
Frame = +1
Query: 205 NEDEIKKIVHGVCKRMPKSVKSECDQFVEKYADLVIS 315
NE + V G +MP SVK V KY+ IS
Sbjct: 502 NEKDGMFFVSGSSGKMPSSVKDAIAGIVSKYSGCSIS 538
>SPCC1620.11 |mug87||nucleoporin Nic96 homolog|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 851
Score = 24.2 bits (50), Expect = 8.2
Identities = 13/46 (28%), Positives = 28/46 (60%), Gaps = 1/46 (2%)
Frame = -2
Query: 288 HELIAFTLDRFRHSFAHPVDYFLDFILVMFVFDLIVN-LFEYEFTD 154
H L+++ D F ++ ++PV YF +++ +++ +N L+ Y TD
Sbjct: 457 HILLSYGSDYFTNNGSNPVMYFF-LLMLCGLYERAINFLYPYFPTD 501
>SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 2386
Score = 24.2 bits (50), Expect = 8.2
Identities = 12/46 (26%), Positives = 23/46 (50%)
Frame = +1
Query: 229 VHGVCKRMPKSVKSECDQFVEKYADLVISLLAQELEPSEVCTELKL 366
+ G+C ++ K + F+ + L + L ELE ++V E +L
Sbjct: 1257 IFGICSKVVKDQEVNIPCFLLPFLVLNVILTESELEVNKVIEEFQL 1302
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.314 0.135 0.395
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,576,959
Number of Sequences: 5004
Number of extensions: 30122
Number of successful extensions: 83
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 75
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 83
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 146319408
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
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