Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0007_J04
(418 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_01_0076 + 627796-627877,628706-628944,629129-629326,629415-62... 52 2e-07
11_01_0075 + 591537-591618,592410-592648,592840-593037,593129-59... 51 3e-07
01_01_0462 + 3422352-3422439,3423057-3423241,3423333-3423530,342... 43 9e-05
05_01_0273 + 2115257-2115589,2115706-2115766,2115876-2115970,211... 38 0.002
05_07_0145 + 28012268-28012624,28012734-28012794,28013758-280138... 37 0.007
01_02_0039 - 10490522-10490606,10490674-10490810,10491107-104912... 37 0.007
01_05_0795 + 25287449-25287967,25288078-25288138,25288640-252887... 33 0.092
01_06_0158 - 27079262-27079346,27079662-27079750,27080540-270806... 32 0.16
02_01_0254 - 1669461-1669590,1669833-1672318 30 0.65
05_03_0331 + 12488005-12488454,12488561-12489505 29 1.5
02_03_0074 + 14781763-14784191,14784888-14784978,14785180-147852... 28 2.6
04_03_0967 + 21318974-21319140,21321677-21321821,21322045-213221... 27 6.0
03_02_0403 + 8160664-8163690 27 6.0
01_04_0124 + 16359695-16359734,16360217-16360453,16361133-163621... 27 6.0
>12_01_0076 +
627796-627877,628706-628944,629129-629326,629415-629474,
629596-629739,631700-631864,632636-632734,633114-633182,
633274-633370,633994-634085,635021-635152,635446-635526,
636284-636400,636497-636598
Length = 558
Score = 52.0 bits (119), Expect = 2e-07
Identities = 27/87 (31%), Positives = 48/87 (55%)
Frame = +1
Query: 112 PVKHHGSKPGSVCVICEFVLKQIDDEIKDKHNEDEIKKIVHGVCKRMPKSVKSECDQFVE 291
PV SK S+C CE + + + + +K +D+I I+H C + S + +C + ++
Sbjct: 55 PVTLLRSKHSSLCSACENITSEAVNFLSEKQIQDKIMTILHDTCSQ-TFSFEQKCLETMD 113
Query: 292 KYADLVISLLAQELEPSEVCTELKLCK 372
YA LV + +A E++P E C + LC+
Sbjct: 114 SYATLVFAKIA-EIKPDEFCKQYGLCR 139
Score = 44.0 bits (99), Expect = 5e-05
Identities = 22/79 (27%), Positives = 43/79 (54%)
Frame = +1
Query: 133 KPGSVCVICEFVLKQIDDEIKDKHNEDEIKKIVHGVCKRMPKSVKSECDQFVEKYADLVI 312
K S CV C ++ +I ++KD E EI +++ C ++ + + +C + V +Y LV+
Sbjct: 148 KSESTCVFCHHIIDEIMSKLKDPDAEFEIIQLLLKECNKI-EGHQQQCKRMVLQYVPLVL 206
Query: 313 SLLAQELEPSEVCTELKLC 369
+ LE ++VC ++ C
Sbjct: 207 VNGEKFLEKNDVCAMIQAC 225
>11_01_0075 +
591537-591618,592410-592648,592840-593037,593129-593188,
593313-593456,594655-594819,595611-595709,596057-596125,
596216-596312,596922-597013,597085-597255,598053-598184,
598479-598559,599131-599247,599344-599433
Length = 611
Score = 51.2 bits (117), Expect = 3e-07
Identities = 26/87 (29%), Positives = 49/87 (56%)
Frame = +1
Query: 112 PVKHHGSKPGSVCVICEFVLKQIDDEIKDKHNEDEIKKIVHGVCKRMPKSVKSECDQFVE 291
PV SK S+C CE + + + + +K +D+I+ I+H C + S + +C + ++
Sbjct: 55 PVTLLRSKHSSLCSACENITSEAVNFLSEKQIQDKIRTILHDTCSQ-TFSFEQKCLETMD 113
Query: 292 KYADLVISLLAQELEPSEVCTELKLCK 372
YA LV + +A E++P+ C + LC+
Sbjct: 114 SYATLVFAKIA-EIKPAAFCKQYGLCR 139
Score = 43.6 bits (98), Expect = 6e-05
Identities = 21/79 (26%), Positives = 43/79 (54%)
Frame = +1
Query: 133 KPGSVCVICEFVLKQIDDEIKDKHNEDEIKKIVHGVCKRMPKSVKSECDQFVEKYADLVI 312
K S C+ C ++ +I ++KD E EI +++ C ++ + + +C + V +Y LV+
Sbjct: 148 KSESTCLFCHHIIDEITSKLKDPDAEFEIIQLLLKECNKI-EGHQQQCKRMVLQYVPLVL 206
Query: 313 SLLAQELEPSEVCTELKLC 369
+ LE ++VC ++ C
Sbjct: 207 VNGEKFLEKNDVCAMIQAC 225
>01_01_0462 +
3422352-3422439,3423057-3423241,3423333-3423530,
3423617-3423676,3424022-3424171
Length = 226
Score = 43.2 bits (97), Expect = 9e-05
Identities = 23/78 (29%), Positives = 40/78 (51%)
Frame = +1
Query: 139 GSVCVICEFVLKQIDDEIKDKHNEDEIKKIVHGVCKRMPKSVKSECDQFVEKYADLVISL 318
G C IC VL ++ +KD + EI +I C + V+ +C + V +Y L++
Sbjct: 134 GDTCGICHHVLVEVLIMLKDPDMQLEIVEIFLKACSKADNYVQ-QCKKMVLEYTPLILVK 192
Query: 319 LAQELEPSEVCTELKLCK 372
+ LE ++VC+ + CK
Sbjct: 193 SQKFLETTDVCSTIHACK 210
Score = 34.7 bits (76), Expect = 0.030
Identities = 20/81 (24%), Positives = 35/81 (43%)
Frame = +1
Query: 130 SKPGSVCVICEFVLKQIDDEIKDKHNEDEIKKIVHGVCKRMPKSVKSECDQFVEKYADLV 309
S G +C +CE + ++ + EI I+H C + +K +C V+ Y L
Sbjct: 45 SANGKLCQLCEQYSTEALFYLQQNETQTEILSILHHACANV-GPLKQQCITLVDYYIPLF 103
Query: 310 ISLLAQELEPSEVCTELKLCK 372
L + P + C + LC+
Sbjct: 104 F-LEVSMVTPEKFCESVHLCR 123
>05_01_0273 +
2115257-2115589,2115706-2115766,2115876-2115970,
2116072-2116184,2116278-2116551,2116923-2117036,
2117169-2117233,2117325-2117466,2117547-2117666,
2118153-2118241,2118349-2118433
Length = 496
Score = 38.3 bits (85), Expect = 0.002
Identities = 11/36 (30%), Positives = 26/36 (72%)
Frame = +1
Query: 262 VKSECDQFVEKYADLVISLLAQELEPSEVCTELKLC 369
+ +EC + V +Y +++++LL + +P +VC+++ LC
Sbjct: 308 ISTECKEVVSEYGEMILNLLIAQTDPQKVCSQVGLC 343
Score = 29.1 bits (62), Expect = 1.5
Identities = 8/38 (21%), Positives = 24/38 (63%)
Frame = +1
Query: 142 SVCVICEFVLKQIDDEIKDKHNEDEIKKIVHGVCKRMP 255
++C +CE + I++++++ ++ I + +C+R+P
Sbjct: 368 AMCSVCEMAVVWIENQLRENKTKELILNYANQLCERLP 405
>05_07_0145 +
28012268-28012624,28012734-28012794,28013758-28013852,
28013944-28014056,28014436-28014604,28014677-28014716,
28014797-28014861,28015485-28015598,28015687-28015751,
28015927-28016083,28016167-28016286,28016447-28016535,
28016631-28016715
Length = 509
Score = 36.7 bits (81), Expect = 0.007
Identities = 13/36 (36%), Positives = 22/36 (61%)
Frame = +1
Query: 262 VKSECDQFVEKYADLVISLLAQELEPSEVCTELKLC 369
V EC V +Y ++ LL E +PS++C+++ LC
Sbjct: 316 VSQECKTVVSQYGQQILDLLLAETQPSKICSQVGLC 351
>01_02_0039 -
10490522-10490606,10490674-10490810,10491107-10491248,
10491355-10491419,10491528-10491641,10491846-10492119,
10492215-10492327,10492405-10492499,10492602-10492662,
10492774-10493103
Length = 471
Score = 36.7 bits (81), Expect = 0.007
Identities = 12/36 (33%), Positives = 22/36 (61%)
Frame = +1
Query: 262 VKSECDQFVEKYADLVISLLAQELEPSEVCTELKLC 369
V EC Q V Y D+++ +L + P ++C+++ LC
Sbjct: 307 VSMECKQVVRDYGDMILEMLIAQASPMKLCSQIGLC 342
>01_05_0795 +
25287449-25287967,25288078-25288138,25288640-25288734,
25288827-25288939,25289480-25289648,25289777-25289816,
25289906-25289970,25290150-25290263,25290398-25290462,
25290572-25290725,25290798-25290914,25292489-25292545
Length = 522
Score = 33.1 bits (72), Expect = 0.092
Identities = 12/34 (35%), Positives = 22/34 (64%)
Frame = +1
Query: 271 ECDQFVEKYADLVISLLAQELEPSEVCTELKLCK 372
EC Q V ++ ++ LL + P++VC+++ LCK
Sbjct: 373 ECKQVVARHGHEMLELLQDKTPPAQVCSKIGLCK 406
>01_06_0158 -
27079262-27079346,27079662-27079750,27080540-27080659,
27080738-27080894,27081167-27081231,27081323-27081436,
27082109-27082178,27082412-27082642,27082963-27083039,
27083143-27083237,27084514-27084574,27084678-27085073
Length = 519
Score = 32.3 bits (70), Expect = 0.16
Identities = 12/36 (33%), Positives = 20/36 (55%)
Frame = +1
Query: 262 VKSECDQFVEKYADLVISLLAQELEPSEVCTELKLC 369
V EC V +Y ++ L E +P++VC+ + LC
Sbjct: 326 VSQECKAVVSQYGQQILDQLRAETKPAKVCSSVGLC 361
>02_01_0254 - 1669461-1669590,1669833-1672318
Length = 871
Score = 30.3 bits (65), Expect = 0.65
Identities = 23/74 (31%), Positives = 37/74 (50%), Gaps = 12/74 (16%)
Frame = +1
Query: 193 KDKHNEDEIKKIV-----HGVCKRM---PKSVKSECDQ-FVEKYADLVISLLAQELEPSE 345
++KHN DEI K++ G+C + +KS C++ V K L+ +L E+ P+
Sbjct: 600 REKHNSDEILKLISEMKGKGICPNVMTYNSLIKSFCERGMVNKAMPLLDEMLQNEIVPNI 659
Query: 346 VCTELKL---CKPS 378
EL + CK S
Sbjct: 660 TSFELLIKAFCKTS 673
>05_03_0331 + 12488005-12488454,12488561-12489505
Length = 464
Score = 29.1 bits (62), Expect = 1.5
Identities = 15/44 (34%), Positives = 21/44 (47%)
Frame = +1
Query: 283 FVEKYADLVISLLAQELEPSEVCTELKLCKPSIPNFDSVTGEIL 414
FVE A+ + L L P C ++ LC+P P D V +L
Sbjct: 104 FVEADANFRMDELGTSLAPPVPCYDMLLCEPESPTADVVDRPLL 147
>02_03_0074 + 14781763-14784191,14784888-14784978,14785180-14785230,
14785882-14785947,14786509-14786610
Length = 912
Score = 28.3 bits (60), Expect = 2.6
Identities = 13/59 (22%), Positives = 27/59 (45%)
Frame = +1
Query: 97 TVNGRPVKHHGSKPGSVCVICEFVLKQIDDEIKDKHNEDEIKKIVHGVCKRMPKSVKSE 273
T + + +H+G+ +C+ Q +E+ HN I++++ KR P K +
Sbjct: 835 TASAKKSRHNGNAAMGFSALCDHASSQRTEEMIIGHNAVSIQQVMDDSNKRKPSPYKGK 893
>04_03_0967 +
21318974-21319140,21321677-21321821,21322045-21322164,
21322261-21322395,21322503-21322564,21322804-21322879,
21323555-21323656,21323732-21323848,21324403-21324461,
21324927-21325101,21325233-21325367,21325429-21325545,
21325686-21325794,21325939-21326051,21326561-21326615,
21326657-21326769
Length = 599
Score = 27.1 bits (57), Expect = 6.0
Identities = 20/72 (27%), Positives = 33/72 (45%)
Frame = +1
Query: 157 CEFVLKQIDDEIKDKHNEDEIKKIVHGVCKRMPKSVKSECDQFVEKYADLVISLLAQELE 336
C F L +I+ + K +ED + K G +P K C + K ++ ++ +E E
Sbjct: 410 CVFKLVEINSRPRIKLSED-VAKCHDGFQVSIP--CKKRCFRLYGKEGYPLVDIMMRESE 466
Query: 337 PSEVCTELKLCK 372
PS E LC+
Sbjct: 467 PSPKAGERILCR 478
>03_02_0403 + 8160664-8163690
Length = 1008
Score = 27.1 bits (57), Expect = 6.0
Identities = 9/21 (42%), Positives = 16/21 (76%)
Frame = +1
Query: 208 EDEIKKIVHGVCKRMPKSVKS 270
+DEIK+++H +CK + +S S
Sbjct: 604 QDEIKQLIHVICKEVDRSGNS 624
>01_04_0124 + 16359695-16359734,16360217-16360453,16361133-16362104,
16362211-16362398,16362564-16363942,16364024-16365047,
16365171-16365566,16367484-16367999,16368085-16368226,
16369409-16369553,16371351-16371432,16371851-16371895,
16372018-16372140
Length = 1762
Score = 27.1 bits (57), Expect = 6.0
Identities = 11/43 (25%), Positives = 23/43 (53%)
Frame = +1
Query: 10 NNYKKKSLLPTYMLETGKGDIETNEIPDNTVNGRPVKHHGSKP 138
N+++ P Y TG G++ E ++V+G + ++G+ P
Sbjct: 1558 NSFRITDAYPRYFRVTGSGEVRRLEASIDSVSGELLLNNGTPP 1600
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.314 0.135 0.395
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,837,825
Number of Sequences: 37544
Number of extensions: 181867
Number of successful extensions: 344
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 330
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 343
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 754585524
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
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