Samia BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0007_J03
         (643 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF499232-2|AAP29639.1| 1183|Homo sapiens pol protein protein.          68   2e-11
AB037726-1|BAA92543.2| 1819|Homo sapiens KIAA1305 protein protein.     52   2e-06
AK126956-1|BAC86762.1|  179|Homo sapiens protein ( Homo sapiens ...    31   3.5  

>AF499232-2|AAP29639.1| 1183|Homo sapiens pol protein protein.
          Length = 1183

 Score = 68.1 bits (159), Expect = 2e-11
 Identities = 42/176 (23%), Positives = 80/176 (45%)
 Frame = +2

Query: 92  KRLHEHGVLINCAKSQLGVPEVEFLGFTVTAAGIKPTTQKVSAVLNYTRPKNIRELRRYL 271
           + L + G  ++  K+Q+  P+V +LGFT+        +++   +     PK+ +++R++L
Sbjct: 354 RHLEDCGYKVSKKKAQICRPQVRYLGFTIRQGERSLGSERKQVICTLPEPKSRKQVRKFL 413

Query: 272 GMLNFYRKFIPNAAHVQAPLHNILSGQCLKATTLISWTPELEKSFEDSKSGLANATLLAH 451
           G   F R +IPN A +  PL+ +      +      W  + +++F + K  L +A  L  
Sbjct: 414 GAAGFCRLWIPNFAVLAKPLYEVTKWGDREP---FEWGSQQQQAFRELKEKLMSAPALGL 470

Query: 452 PNPRAHLAIMTDASDSAIGAVLQQKSDSGWVPLGFFSKKLNNAQRKYSPYDRELLA 619
           PN      +     +     VL Q       P+ + SK+L+   + + P  R L A
Sbjct: 471 PNLTKPFTLYVSEREKMAVRVLTQTVGPWPRPVAYLSKQLDGVSKGWPPCLRALAA 526


>AB037726-1|BAA92543.2| 1819|Homo sapiens KIAA1305 protein protein.
          Length = 1819

 Score = 52.0 bits (119), Expect = 2e-06
 Identities = 36/137 (26%), Positives = 59/137 (43%)
 Frame = +2

Query: 188  GIKPTTQKVSAVLNYTRPKNIRELRRYLGMLNFYRKFIPNAAHVQAPLHNILSGQCLKAT 367
            G  P  Q ++ +   T P N   L  ++G ++ +R  IP+   +  PLH++     LK  
Sbjct: 992  GKAPCQQVLAHLAQLTIPSNFTALSFFMGFMDSHRDAIPDYEALVGPLHSL-----LKQK 1046

Query: 368  TLISWTPELEKSFEDSKSGLANATLLAHPNPRAHLAIMTDASDSAIGAVLQQKSDSGWVP 547
                W  E E++F   K  L +A  L  PN +    +    S  A+ A+L Q+      P
Sbjct: 1047 PDWQWDQEHEEAFLALKRALVSALCLMAPNSQLPFRLEVTVSHVALTAILHQEHSGRKHP 1106

Query: 548  LGFFSKKLNNAQRKYSP 598
            + + SK L   +    P
Sbjct: 1107 IAYTSKPLLPDEESQGP 1123


>AK126956-1|BAC86762.1|  179|Homo sapiens protein ( Homo sapiens
           cDNA FLJ45009 fis, clone BRAWH3012779. ).
          Length = 179

 Score = 31.1 bits (67), Expect = 3.5
 Identities = 25/100 (25%), Positives = 40/100 (40%)
 Frame = +2

Query: 275 MLNFYRKFIPNAAHVQAPLHNILSGQCLKATTLISWTPELEKSFEDSKSGLANATLLAHP 454
           M+ ++  +IP  A +  PL+ +  G         S+      SF   K  L  A  LA P
Sbjct: 1   MIGYFHLWIPGFAILTKPLYKLTKGNLADPINPKSFP---HSSFHSLKIALETAPTLALP 57

Query: 455 NPRAHLAIMTDASDSAIGAVLQQKSDSGWVPLGFFSKKLN 574
           +     ++ T         +L Q    G  P+ F SK+L+
Sbjct: 58  DSSQPFSLHTAKVQGCAVGILTQ--GPGPCPIAFLSKQLD 95


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 90,357,116
Number of Sequences: 237096
Number of extensions: 1888762
Number of successful extensions: 3627
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3527
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3627
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 7085195460
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)