Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0007_J03
         (643 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cycl...    25   0.82 
AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cycl...    25   0.82 
S76958-1|AAB33933.1|   90|Apis mellifera olfactory receptor prot...    22   4.4  
S76957-1|AAB33932.1|  169|Apis mellifera olfactory receptor prot...    22   4.4  
S76956-1|AAB33931.1|  168|Apis mellifera olfactory receptor prot...    22   4.4  
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    22   4.4  
DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       22   5.8  
DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholi...    21   7.7  

>AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 24.6 bits (51), Expect = 0.82
 Identities = 25/123 (20%), Positives = 49/123 (39%), Gaps = 4/123 (3%)
 Frame = +2

Query: 89  SKRLHEHGVLINCAKSQLGVPEVEFLGFTVTAAGI--KPTTQKVSAVLNYTRPKNIRELR 262
           +K+LH   + +   K++     V+FL    +  G+   P   ++  +    +   +   R
Sbjct: 154 AKKLHGTDIEMRILKTKNECDHVQFLITNTSGPGVVSNPMIAELETLSVEPKVSPMTFCR 213

Query: 263 RYLGMLNFYRKFI--PNAAHVQAPLHNILSGQCLKATTLISWTPELEKSFEDSKSGLANA 436
            +   L F R  I       +   +  + SG C     L++  P LE +FE+  S +   
Sbjct: 214 VFPFHLMFNRDLIIVQTGCTITRVIPQVCSGNCKLNDILLTVRPHLELTFENILSHINTV 273

Query: 437 TLL 445
            +L
Sbjct: 274 YVL 276


>AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 24.6 bits (51), Expect = 0.82
 Identities = 25/123 (20%), Positives = 49/123 (39%), Gaps = 4/123 (3%)
 Frame = +2

Query: 89  SKRLHEHGVLINCAKSQLGVPEVEFLGFTVTAAGI--KPTTQKVSAVLNYTRPKNIRELR 262
           +K+LH   + +   K++     V+FL    +  G+   P   ++  +    +   +   R
Sbjct: 154 AKKLHGTDIEMRILKTKNECDHVQFLITNTSGPGVVSNPMIAELETLSVEPKVSPMTFCR 213

Query: 263 RYLGMLNFYRKFI--PNAAHVQAPLHNILSGQCLKATTLISWTPELEKSFEDSKSGLANA 436
            +   L F R  I       +   +  + SG C     L++  P LE +FE+  S +   
Sbjct: 214 VFPFHLMFNRDLIIVQTGCTITRVIPQVCSGNCKLNDILLTVRPHLELTFENILSHINTV 273

Query: 437 TLL 445
            +L
Sbjct: 274 YVL 276


>S76958-1|AAB33933.1|   90|Apis mellifera olfactory receptor
           protein.
          Length = 90

 Score = 22.2 bits (45), Expect = 4.4
 Identities = 7/20 (35%), Positives = 14/20 (70%)
 Frame = +3

Query: 306 MQPMYKLLCIISYQDNVLRL 365
           +QP++KL C  ++ + V+ L
Sbjct: 41  LQPLFKLACTDTFMEGVIVL 60


>S76957-1|AAB33932.1|  169|Apis mellifera olfactory receptor
           protein.
          Length = 169

 Score = 22.2 bits (45), Expect = 4.4
 Identities = 12/28 (42%), Positives = 16/28 (57%), Gaps = 1/28 (3%)
 Frame = -1

Query: 256 LSYIF-RTCII*YCTDLLCRWLNTCSSH 176
           +SYI+    I+    D  CR  +TCSSH
Sbjct: 96  ISYIYILMAILRMSADGGCRNFSTCSSH 123


>S76956-1|AAB33931.1|  168|Apis mellifera olfactory receptor
           protein.
          Length = 168

 Score = 22.2 bits (45), Expect = 4.4
 Identities = 12/28 (42%), Positives = 16/28 (57%), Gaps = 1/28 (3%)
 Frame = -1

Query: 256 LSYIF-RTCII*YCTDLLCRWLNTCSSH 176
           +SYI+    I+    D  CR  +TCSSH
Sbjct: 95  ISYIYILMAILRMSADGGCRNFSTCSSH 122


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 22.2 bits (45), Expect = 4.4
 Identities = 12/55 (21%), Positives = 24/55 (43%)
 Frame = +2

Query: 473 AIMTDASDSAIGAVLQQKSDSGWVPLGFFSKKLNNAQRKYSPYDRELLAIYESIK 637
           A+M       +  V +Q  D+   P G    KL NA+ + +     L+ +  +++
Sbjct: 249 AVMNMTGAGYVWIVTEQALDASNAPEGLLGLKLINAENETAHIKDSLIVLTSALQ 303


>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 21.8 bits (44), Expect = 5.8
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = +2

Query: 206 QKVSAVLNYTRPKNIRELRRYLG 274
           + VS V+NY  PK I E    +G
Sbjct: 518 KNVSHVINYDLPKGIDEYVHRIG 540


>DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholine
           receptor alpha9subunit protein.
          Length = 431

 Score = 21.4 bits (43), Expect = 7.7
 Identities = 16/59 (27%), Positives = 28/59 (47%), Gaps = 2/59 (3%)
 Frame = +2

Query: 227 NYTRPKNIRELRRYLGMLNFYRKFIPNAAHVQA-PLHNILSGQCL-KATTLISWTPELE 397
           NY  P  + +L+RYL     + ++ PN   + +  + N ++ Q L K      WT  +E
Sbjct: 37  NYDHPTTLLKLKRYL-----FCEYDPNVRPISSHQIANNVTMQLLPKLMEFDDWTSVME 90


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 176,362
Number of Sequences: 438
Number of extensions: 4101
Number of successful extensions: 8
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19315974
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)