Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0007_J01
(575 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_01_0802 - 6287180-6287605 34 0.093
07_01_0804 - 6291265-6291765 31 0.87
02_04_0414 - 22685981-22686178,22686374-22686465,22686580-226866... 29 3.5
10_08_0965 + 21915842-21916906 28 4.6
09_02_0602 - 11118788-11119178,11119262-11119451,11119590-111196... 28 4.6
02_05_0133 - 26117998-26118243,26118320-26119592,26120773-26121080 28 4.6
12_01_0033 - 272848-272943,274026-274169,274264-274375,274521-27... 27 8.1
11_01_0035 - 256087-256185,256287-256430,256521-256632,256777-25... 27 8.1
06_01_0486 - 3455030-3455770 27 8.1
02_01_0042 + 295608-296222,298479-298925 27 8.1
>07_01_0802 - 6287180-6287605
Length = 141
Score = 33.9 bits (74), Expect = 0.093
Identities = 13/21 (61%), Positives = 14/21 (66%), Gaps = 1/21 (4%)
Frame = -1
Query: 95 PRGPGAICCWDG-PPTPRAGH 36
P GPG +C W G P TPR GH
Sbjct: 121 PNGPGGVCYWLGYPRTPRTGH 141
>07_01_0804 - 6291265-6291765
Length = 166
Score = 30.7 bits (66), Expect = 0.87
Identities = 12/21 (57%), Positives = 13/21 (61%), Gaps = 1/21 (4%)
Frame = -1
Query: 95 PRGPGAICCWDG-PPTPRAGH 36
P G G +C W G P TPR GH
Sbjct: 146 PNGTGGVCYWLGYPRTPRTGH 166
>02_04_0414 -
22685981-22686178,22686374-22686465,22686580-22686676,
22686801-22686916,22687314-22687513,22687588-22687740,
22687960-22688171,22688403-22688519,22688613-22688687,
22688815-22688853,22689518-22689689,22689809-22690056,
22690151-22690324,22690418-22690504
Length = 659
Score = 28.7 bits (61), Expect = 3.5
Identities = 12/27 (44%), Positives = 18/27 (66%)
Frame = -1
Query: 575 AASWALLVIINTKDILTYICHINTFLG 495
A++ LL +IN + +Y+ HIN FLG
Sbjct: 115 ASTTTLLHVINESEKTSYVNHINNFLG 141
>10_08_0965 + 21915842-21916906
Length = 354
Score = 28.3 bits (60), Expect = 4.6
Identities = 15/46 (32%), Positives = 22/46 (47%), Gaps = 2/46 (4%)
Frame = +3
Query: 126 RTDDGWTTSWYDGSSSRYGSRWPRRQRTSR--NATILKLHDVE*WW 257
R+ + W+ W SSR+ SRW + +SR T+ E WW
Sbjct: 280 RSQERWSNRW----SSRWSSRWSSGRWSSRYDAGTVTAAATAEWWW 321
>09_02_0602 -
11118788-11119178,11119262-11119451,11119590-11119658,
11119890-11120016,11120134-11120399,11120760-11120872,
11121693-11121764,11121860-11121998,11124277-11124360,
11125278-11125771,11127604-11128187
Length = 842
Score = 28.3 bits (60), Expect = 4.6
Identities = 15/48 (31%), Positives = 23/48 (47%)
Frame = -2
Query: 328 NYIHLNTNKSHKEHFVWCSLVNENHHYSTSCNFNIVAFLEVLCLLGHR 185
N + +T + + L N N H S S NF ++ LE L L G++
Sbjct: 417 NGVRCSTGSDNTMRIISLDLSNSNLHGSISNNFTLLTALEYLNLSGNQ 464
>02_05_0133 - 26117998-26118243,26118320-26119592,26120773-26121080
Length = 608
Score = 28.3 bits (60), Expect = 4.6
Identities = 9/26 (34%), Positives = 15/26 (57%)
Frame = +3
Query: 126 RTDDGWTTSWYDGSSSRYGSRWPRRQ 203
+ +D W + DGS + SRWP+ +
Sbjct: 355 KAEDAWAAAGGDGSGTTAPSRWPKEE 380
>12_01_0033 -
272848-272943,274026-274169,274264-274375,274521-274702,
274781-274912,275038-276330,279841-280545,280649-280695,
280787-280865
Length = 929
Score = 27.5 bits (58), Expect = 8.1
Identities = 16/30 (53%), Positives = 16/30 (53%)
Frame = -1
Query: 95 PRGPGAICCWDGPPTPRAGHCKPGGAPPGP 6
PR PGA PP P G KPGG PP P
Sbjct: 618 PRPPGA-----PPPPPPPG--KPGGPPPPP 640
>11_01_0035 -
256087-256185,256287-256430,256521-256632,256777-256958,
257038-257169,257297-258589,259133-259837,260465-260549,
260604-260650,260810-260900,261838-262101,262195-262309,
262455-262570,262713-262847,262969-263036,263292-263411
Length = 1235
Score = 27.5 bits (58), Expect = 8.1
Identities = 16/30 (53%), Positives = 16/30 (53%)
Frame = -1
Query: 95 PRGPGAICCWDGPPTPRAGHCKPGGAPPGP 6
PR PGA PP P G KPGG PP P
Sbjct: 923 PRPPGA-----PPPPPPPG--KPGGPPPPP 945
>06_01_0486 - 3455030-3455770
Length = 246
Score = 27.5 bits (58), Expect = 8.1
Identities = 10/19 (52%), Positives = 11/19 (57%)
Frame = -1
Query: 59 PPTPRAGHCKPGGAPPGPR 3
PP+PR C P PP PR
Sbjct: 67 PPSPRCPSCHPPYTPPTPR 85
>02_01_0042 + 295608-296222,298479-298925
Length = 353
Score = 27.5 bits (58), Expect = 8.1
Identities = 13/60 (21%), Positives = 30/60 (50%)
Frame = -1
Query: 560 LLVIINTKDILTYICHINTFLGFTKCIWSGVYYSKKKHTI*KLEYIKLDQLMITDYLIGK 381
LL++ N D+LTY+ + ++ I SG + E+++++ + Y++G+
Sbjct: 152 LLIVSNPVDVLTYVAWKLSGFPASRVIGSGTNLDSSRFRFLLAEHLQVNAQDVQAYMVGE 211
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,509,558
Number of Sequences: 37544
Number of extensions: 270227
Number of successful extensions: 873
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 831
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 873
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1340735508
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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