Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0007_J01
         (575 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024772-1|AAF60536.2|  242|Caenorhabditis elegans Hypothetical ...    30   1.4  
U80451-8|AAB37842.2|  288|Caenorhabditis elegans Collagen protei...    28   5.5  
U50312-4|AAA92321.1|  542|Caenorhabditis elegans Temporarily ass...    27   7.2  
AC024790-13|AAL32247.1|  311|Caenorhabditis elegans Hypothetical...    27   7.2  
Z82285-8|CAB05297.2|  393|Caenorhabditis elegans Hypothetical pr...    27   9.5  
Z32673-1|CAA83585.1|  472|Caenorhabditis elegans transcription f...    27   9.5  

>AC024772-1|AAF60536.2|  242|Caenorhabditis elegans Hypothetical
           protein Y40C5A.1 protein.
          Length = 242

 Score = 29.9 bits (64), Expect = 1.4
 Identities = 20/57 (35%), Positives = 23/57 (40%), Gaps = 2/57 (3%)
 Frame = -2

Query: 361 IIPEESVQSYHNYIHLNTNKSHKEHFVWCSLVNENHHYSTSCN--FNIVAFLEVLCL 197
           II   S  S H  +  N NK H  H    S+ N  HH  T C   F I+      CL
Sbjct: 126 IIRTPSQHSIHQSVRFNDNKRHHHHHHHDSIRNFVHH-DTPCRNCFRIIVGSRYHCL 181


>U80451-8|AAB37842.2|  288|Caenorhabditis elegans Collagen protein
           20 protein.
          Length = 288

 Score = 27.9 bits (59), Expect = 5.5
 Identities = 15/34 (44%), Positives = 16/34 (47%), Gaps = 4/34 (11%)
 Frame = -1

Query: 95  PRGPGAICCWDGPPTPRAGHCKPG----GAPPGP 6
           P GP       GPP P  GH +PG    G P GP
Sbjct: 148 PAGPAGGPGPKGPPGPPGGHGEPGPAGRGGPRGP 181


>U50312-4|AAA92321.1|  542|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 38 protein.
          Length = 542

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = -2

Query: 208 VLCLLGHRDPYLEELPSYQEVVHPSSVRHAF 116
           +L  L HR+  L+    Y E++ PSSV  AF
Sbjct: 203 LLACLAHRNRLLKRGEKYTEMIVPSSVHAAF 233


>AC024790-13|AAL32247.1|  311|Caenorhabditis elegans Hypothetical
          protein Y47D7A.13 protein.
          Length = 311

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 13/25 (52%), Positives = 13/25 (52%)
 Frame = -1

Query: 89 GPGAICCWDGPPTPRAGHCKPGGAP 15
          G G  CC   PP P  G C  GGAP
Sbjct: 23 GGGGGCCAPPPPPPCGGGC-GGGAP 46


>Z82285-8|CAB05297.2|  393|Caenorhabditis elegans Hypothetical
           protein T28F3.3 protein.
          Length = 393

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = -2

Query: 370 ILMIIPEESVQSYHNYIHLNTNKSHKEH 287
           +L IIP       H++ H + N SHKEH
Sbjct: 131 LLHIIPHSLSPHDHSHDHHDHNHSHKEH 158


>Z32673-1|CAA83585.1|  472|Caenorhabditis elegans transcription
           factor protein.
          Length = 472

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 9/28 (32%), Positives = 20/28 (71%)
 Frame = -3

Query: 345 LCNHIIITFTLTQISHTRNTLFGVAWLM 262
           LC+H++  F + ++S++ NT+  V +L+
Sbjct: 31  LCDHMLSKFVVVEVSNSNNTMTLVEYLV 58


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,596,702
Number of Sequences: 27780
Number of extensions: 260155
Number of successful extensions: 841
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 761
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 838
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1194789454
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)