Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0007_I23
(618 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC57A7.04c |pabp||mRNA export shuttling protein |Schizosacchar... 52 9e-08
SPAC22E12.02 |||RNA-binding protein|Schizosaccharomyces pombe|ch... 37 0.003
SPAC328.05 |||RNA-binding protein involved in export of mRNAs|Sc... 35 0.011
SPBC428.12c |||RNA-binding protein|Schizosaccharomyces pombe|chr... 34 0.014
SPBC23E6.01c ||SPBPJ758.01|RNA-binding protein, rrm type|Schizos... 33 0.033
SPBC29A10.02 |spo5|mrb1, mug12, SPBC365.18|meiotic RNA-binding p... 30 0.23
SPAC32A11.01 |mug8||conserved fungal protein|Schizosaccharomyces... 29 0.41
SPCC594.01 ||SPCC736.16|DUF1769 family protein|Schizosaccharomyc... 28 0.94
SPAC343.17c |||WD repeat protein, human WDR70 family|Schizosacch... 27 1.6
SPAC1F8.06 |fta5|sma5|Sim4 and Mal2 associated |Schizosaccharomy... 27 2.2
SPAC3G6.02 |dss1||mRNA export protein Dss1|Schizosaccharomyces p... 27 2.9
SPBP8B7.11 |nxt3||ubiquitin protease cofactor |Schizosaccharomyc... 27 2.9
SPAC9E9.06c |||threonine synthase |Schizosaccharomyces pombe|chr... 26 3.8
SPBC1773.09c |mug184||meiotically upregulated gene Mug184|Schizo... 25 8.8
SPAC11D3.18c |||nicotinic acid plasma membrane transporter |Schi... 25 8.8
SPAC2G11.12 |rqh1|hus2, rad12, rec9|RecQ type DNA helicase Rqh1|... 25 8.8
>SPAC57A7.04c |pabp||mRNA export shuttling protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 653
Score = 51.6 bits (118), Expect = 9e-08
Identities = 33/95 (34%), Positives = 48/95 (50%), Gaps = 8/95 (8%)
Frame = +1
Query: 34 NAERAKRELDGKMRNGRTLRVRFAPHNSAVR--------VKNLPPFVSNELLYRAFEIFG 189
+ E+A EL+ + GR R+ ++ + ++R +KNL P + N+ L+ F FG
Sbjct: 133 DGEKALDELNYTLIKGRPCRIMWSQRDPSLRKMGTGNVFIKNLDPAIDNKALHDTFSAFG 192
Query: 190 KIERAYVRVDERGKTLGEGVVEFARKPSALAAIRN 294
KI V VDE G G G V F SA AAI +
Sbjct: 193 KILSCKVAVDELGNAKGYGFVHFDSVESANAAIEH 227
Score = 37.1 bits (82), Expect = 0.002
Identities = 20/60 (33%), Positives = 29/60 (48%)
Frame = +1
Query: 127 VKNLPPFVSNELLYRAFEIFGKIERAYVRVDERGKTLGEGVVEFARKPSALAAIRNCTEK 306
+KNL V +E L F FG I A + DE+GK+ G G V + A A+ ++
Sbjct: 368 IKNLQDEVDDERLKAEFSAFGTITSAKIMTDEQGKSKGFGFVCYTTPEEANKAVTEMNQR 427
Score = 27.9 bits (59), Expect = 1.2
Identities = 17/62 (27%), Positives = 27/62 (43%)
Frame = +1
Query: 121 VRVKNLPPFVSNELLYRAFEIFGKIERAYVRVDERGKTLGEGVVEFARKPSALAAIRNCT 300
V +KNL ++ + F FG+I + D+ K G G V +A A A+
Sbjct: 263 VYIKNLDTEITEQEFSDLFGQFGEITSLSLVKDQNDKPRGFGFVNYANHECAQKAVDELN 322
Query: 301 EK 306
+K
Sbjct: 323 DK 324
>SPAC22E12.02 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 219
Score = 36.7 bits (81), Expect = 0.003
Identities = 26/80 (32%), Positives = 40/80 (50%)
Frame = +1
Query: 52 RELDGKMRNGRTLRVRFAPHNSAVRVKNLPPFVSNELLYRAFEIFGKIERAYVRVDERGK 231
R+ G++ TL + + P++ + V NL V++E LY+AF + + + V D GK
Sbjct: 10 RKAGGQVWEDPTL-LEWDPNHFRLFVGNLGNDVNDESLYQAFSEYPSLVKTKVVRDREGK 68
Query: 232 TLGEGVVEFARKPSALAAIR 291
T G G V F L A R
Sbjct: 69 TRGFGFVSFKDSDQFLKAWR 88
>SPAC328.05 |||RNA-binding protein involved in export of
mRNAs|Schizosaccharomyces pombe|chr 1|||Manual
Length = 434
Score = 34.7 bits (76), Expect = 0.011
Identities = 19/61 (31%), Positives = 31/61 (50%)
Frame = +1
Query: 106 PHNSAVRVKNLPPFVSNELLYRAFEIFGKIERAYVRVDERGKTLGEGVVEFARKPSALAA 285
P + + V NLP S+ L F G + RA + + G++ G GVV+F + A ++
Sbjct: 277 PCSDCIYVGNLPWATSDRNLLDLFTDIGSVIRARIAYEPTGRSKGFGVVQFENENDAASS 336
Query: 286 I 288
I
Sbjct: 337 I 337
>SPBC428.12c |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 116
Score = 34.3 bits (75), Expect = 0.014
Identities = 21/60 (35%), Positives = 27/60 (45%)
Frame = +1
Query: 115 SAVRVKNLPPFVSNELLYRAFEIFGKIERAYVRVDERGKTLGEGVVEFARKPSALAAIRN 294
+ V V NL P V+ LLY AF FG+I + E+ VEF A A+ N
Sbjct: 6 ATVHVGNLAPSVTESLLYNAFIPFGEIISVALHRKEKAVDRSYAFVEFDEPEDAKEAMEN 65
>SPBC23E6.01c ||SPBPJ758.01|RNA-binding protein, rrm
type|Schizosaccharomyces pombe|chr 2|||Manual
Length = 473
Score = 33.1 bits (72), Expect = 0.033
Identities = 26/59 (44%), Positives = 32/59 (54%)
Frame = +1
Query: 112 NSAVRVKNLPPFVSNELLYRAFEIFGKIERAYVRVDERGKTLGEGVVEFARKPSALAAI 288
NS V V L FVS E L F+ FG+I YV++ GK G G V+F + SA AI
Sbjct: 302 NSTVFVGGLSKFVSEEELKYLFQNFGEI--VYVKIPP-GK--GCGFVQFVNRQSAEIAI 355
>SPBC29A10.02 |spo5|mrb1, mug12, SPBC365.18|meiotic RNA-binding
protein 1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 567
Score = 30.3 bits (65), Expect = 0.23
Identities = 23/73 (31%), Positives = 33/73 (45%), Gaps = 4/73 (5%)
Frame = +1
Query: 121 VRVKNLPPFVSNELLYRAFEIFGKIERAYVRVD-ERGKTLGEGVVEFARKPSAL---AAI 288
V ++ LPP S+E L FGK+ + +D E G G F + SAL +A+
Sbjct: 298 VYIRGLPPNTSDENLLLYTNRFGKVSSSKAIIDMETNLCKGYGFACFEEEKSALICISAM 357
Query: 289 RNCTEKCFFLTSS 327
C +C F S
Sbjct: 358 TLCGYQCSFAKES 370
>SPAC32A11.01 |mug8||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 720
Score = 29.5 bits (63), Expect = 0.41
Identities = 13/32 (40%), Positives = 19/32 (59%)
Frame = -1
Query: 270 RFPRKFNDTFP*CLPSFIYSHVSSFNFPKYFK 175
R+ K ++T CLPS + S + SFN+P K
Sbjct: 224 RYTNKSSETGFSCLPSALQSQLQSFNYPPSLK 255
>SPCC594.01 ||SPCC736.16|DUF1769 family protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 791
Score = 28.3 bits (60), Expect = 0.94
Identities = 13/38 (34%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
Frame = +1
Query: 367 EFDGY-PEKNLPKKHPEFMRAREVGPRFSEAGSFEHEY 477
+FDG+ P+ + PK+ E+ R R + G F+ EY
Sbjct: 43 DFDGFTPDGSPPKRDSEYFRGRSRKFQIQAEGRFKKEY 80
>SPAC343.17c |||WD repeat protein, human WDR70
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 576
Score = 27.5 bits (58), Expect = 1.6
Identities = 10/23 (43%), Positives = 16/23 (69%)
Frame = -2
Query: 194 IFPNISKALYKSSFDTNGGKFFT 126
+FP SK + ++FD NG +F+T
Sbjct: 84 MFPGHSKIVTTTTFDKNGSRFYT 106
>SPAC1F8.06 |fta5|sma5|Sim4 and Mal2 associated |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 385
Score = 27.1 bits (57), Expect = 2.2
Identities = 12/21 (57%), Positives = 14/21 (66%)
Frame = -1
Query: 234 CLPSFIYSHVSSFNFPKYFKS 172
C PS Y+ VS+FN P YF S
Sbjct: 188 CHPSNGYTEVSTFNKPAYFGS 208
>SPAC3G6.02 |dss1||mRNA export protein Dss1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 71
Score = 26.6 bits (56), Expect = 2.9
Identities = 10/24 (41%), Positives = 15/24 (62%)
Frame = +1
Query: 343 VENFEEPDEFDGYPEKNLPKKHPE 414
+EN E+ DEF+ + +N P K E
Sbjct: 9 LENLEDDDEFEDFATENWPMKDTE 32
>SPBP8B7.11 |nxt3||ubiquitin protease cofactor |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 434
Score = 26.6 bits (56), Expect = 2.9
Identities = 12/28 (42%), Positives = 18/28 (64%)
Frame = +1
Query: 115 SAVRVKNLPPFVSNELLYRAFEIFGKIE 198
++V VKN+PP S+ L A IFG ++
Sbjct: 315 TSVFVKNIPPETSDVSLKSAMSIFGPVK 342
>SPAC9E9.06c |||threonine synthase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 514
Score = 26.2 bits (55), Expect = 3.8
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = -1
Query: 324 RC*EETLLRTVTYGCQSARFPRKFNDTFP*CLPSF 220
RC E+T + +TY C S P KF+ L S+
Sbjct: 432 RCLEKTKDQDITYICLSTAHPAKFDKAVNLALSSY 466
>SPBC1773.09c |mug184||meiotically upregulated gene
Mug184|Schizosaccharomyces pombe|chr 2|||Manual
Length = 551
Score = 25.0 bits (52), Expect = 8.8
Identities = 11/28 (39%), Positives = 20/28 (71%), Gaps = 1/28 (3%)
Frame = -3
Query: 241 PLMSSL-FHLLSRKLFQFSQIFQKLYTK 161
P+ SS+ F++ +R+ + +FQKLY+K
Sbjct: 454 PIFSSIDFNVRNREYWNQLMVFQKLYSK 481
>SPAC11D3.18c |||nicotinic acid plasma membrane transporter
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 498
Score = 25.0 bits (52), Expect = 8.8
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = +1
Query: 241 EGVVEFARKPSALAAIRNCTEKCFFLTSSLRPVIV 345
EG+V F P L A+ + E +FLT R V +
Sbjct: 226 EGLVSFIGVPLCLFALPDKMENAWFLTREEREVAI 260
>SPAC2G11.12 |rqh1|hus2, rad12, rec9|RecQ type DNA helicase
Rqh1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1328
Score = 25.0 bits (52), Expect = 8.8
Identities = 13/40 (32%), Positives = 20/40 (50%)
Frame = +2
Query: 491 SNSMSFTDRRKRRLRKSWPLKKKSWRHKWNMPSTNMRRNY 610
S S++ T +R S+ KS+RHK S + +R Y
Sbjct: 1261 SQSLTQTGSVPKRKSTSYTRPSKSYRHKRGSTSYSRKRKY 1300
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,469,942
Number of Sequences: 5004
Number of extensions: 50705
Number of successful extensions: 173
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 167
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 173
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 271646730
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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