Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0007_I23
(618 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
X70944-1|CAA50283.1| 707|Homo sapiens PTB-associated splicing f... 188 1e-47
X16850-1|CAA34747.1| 396|Homo sapiens myoblast antigen 24.1D5 p... 188 1e-47
BC004534-1|AAH04534.2| 634|Homo sapiens SFPQ protein protein. 188 1e-47
AL590434-2|CAI12467.1| 707|Homo sapiens splicing factor proline... 188 1e-47
BC051192-1|AAH51192.1| 707|Homo sapiens splicing factor proline... 185 1e-46
CR457272-1|CAG33553.1| 357|Homo sapiens PSPC1 protein. 178 1e-44
BC014184-1|AAH14184.2| 393|Homo sapiens PSPC1 protein protein. 178 1e-44
AL354808-4|CAI41004.1| 523|Homo sapiens paraspeckle component 1... 178 1e-44
AK001817-1|BAA91924.1| 357|Homo sapiens protein ( Homo sapiens ... 178 1e-44
AF449627-1|AAL59602.1| 393|Homo sapiens paraspeckle protein 1 b... 178 1e-44
AF448795-1|AAL59601.1| 523|Homo sapiens paraspeckle protein 1 a... 178 1e-44
BC027708-1|AAH27708.1| 525|Homo sapiens SFPQ protein protein. 177 3e-44
L14599-1|AAC37578.1| 471|Homo sapiens protein ( Human mRNA, com... 176 6e-44
Y11289-1|CAA72157.1| 471|Homo sapiens p54nrb protein. 175 8e-44
U89867-1|AAC51852.1| 471|Homo sapiens nuclear matrix protein 55... 175 8e-44
U02493-1|AAA03427.1| 471|Homo sapiens 54 kDa protein protein. 175 8e-44
CR456761-1|CAG33042.1| 471|Homo sapiens NONO protein. 175 8e-44
BC069639-1|AAH69639.1| 471|Homo sapiens non-POU domain containi... 175 8e-44
BC069616-1|AAH69616.1| 471|Homo sapiens non-POU domain containi... 175 8e-44
BC028299-1|AAH28299.1| 471|Homo sapiens non-POU domain containi... 175 8e-44
BC012141-1|AAH12141.1| 471|Homo sapiens NONO protein protein. 175 8e-44
BC003129-1|AAH03129.1| 471|Homo sapiens NONO protein protein. 175 8e-44
BC002364-1|AAH02364.1| 471|Homo sapiens non-POU domain containi... 175 8e-44
AL354808-5|CAI41005.1| 248|Homo sapiens paraspeckle component 1... 131 2e-30
AL834505-1|CAD39162.1| 202|Homo sapiens hypothetical protein pr... 109 8e-24
BC041956-1|AAH41956.1| 243|Homo sapiens LOC645974 protein protein. 46 1e-04
AL662864-2|CAI40931.1| 200|Homo sapiens novel protein similar t... 46 1e-04
AL662864-1|CAI40930.1| 200|Homo sapiens novel protein similar t... 46 1e-04
BC037428-1|AAH37428.1| 606|Homo sapiens RAVER1 protein protein. 43 0.001
AB075858-1|BAB85564.1| 384|Homo sapiens KIAA1978 protein protein. 43 0.001
AL109839-2|CAI95632.1| 330|Homo sapiens chromosome 20 open read... 42 0.002
AL109839-1|CAI95631.1| 614|Homo sapiens chromosome 20 open read... 42 0.002
AL008725-5|CAI95663.1| 330|Homo sapiens chromosome 20 open read... 42 0.002
AL008725-4|CAI95662.1| 614|Homo sapiens chromosome 20 open read... 42 0.002
CR457134-1|CAG33415.1| 320|Homo sapiens EIF3S4 protein. 40 0.007
BT006889-1|AAP35535.1| 320|Homo sapiens eukaryotic translation ... 40 0.007
BC022543-1|AAH22543.1| 217|Homo sapiens zinc finger CCHC-type a... 40 0.007
BC010177-1|AAH10177.1| 140|Homo sapiens ZCRB1 protein protein. 40 0.007
BC008469-1|AAH08469.1| 320|Homo sapiens eukaryotic translation ... 40 0.007
BC005099-1|AAH05099.1| 141|Homo sapiens Unknown (protein for IM... 40 0.007
BC000733-1|AAH00733.1| 320|Homo sapiens eukaryotic translation ... 40 0.007
AF094850-1|AAG15419.1| 320|Homo sapiens eukaryotic translation ... 40 0.007
AF092453-1|AAG15396.1| 320|Homo sapiens eukaryotic translation ... 40 0.007
AF020833-1|AAB71866.1| 320|Homo sapiens eukaryotic translation ... 40 0.007
AB062361-1|BAB56132.1| 217|Homo sapiens ZCRB1 protein protein. 40 0.007
Z48501-1|CAA88401.1| 522|Homo sapiens polyadenylate binding pro... 40 0.009
Y00345-1|CAA68428.1| 633|Homo sapiens protein ( Human mRNA for ... 40 0.009
U68104-1|AAD08718.1| 636|Homo sapiens poly(A)-binding protein p... 40 0.009
BC041863-1|AAH41863.1| 636|Homo sapiens poly(A) binding protein... 40 0.009
BC023520-1|AAH23520.1| 636|Homo sapiens poly(A) binding protein... 40 0.009
BC015958-1|AAH15958.1| 636|Homo sapiens PABPC1 protein protein. 40 0.009
U96074-1|AAC78728.1| 320|Homo sapiens translation initiation fa... 38 0.028
BC065540-1|AAH65540.1| 631|Homo sapiens PABPC4 protein protein. 38 0.028
U75686-1|AAB97309.1| 644|Homo sapiens polyadenylate binding pro... 37 0.050
U33818-1|AAC50350.1| 644|Homo sapiens inducible poly(A)-binding... 37 0.050
BC094755-1|AAH94755.1| 660|Homo sapiens PABPC4 protein protein. 37 0.050
BC071591-1|AAH71591.1| 660|Homo sapiens PABPC4 protein protein. 37 0.050
AL845289-3|CAI12300.1| 644|Homo sapiens poly(A) binding protein... 37 0.050
AL845289-2|CAI12298.1| 660|Homo sapiens poly(A) binding protein... 37 0.050
AL845289-1|CAI12299.1| 615|Homo sapiens poly(A) binding protein... 37 0.050
AL365277-4|CAI16414.1| 644|Homo sapiens poly(A) binding protein... 37 0.050
AL365277-3|CAI16412.1| 660|Homo sapiens poly(A) binding protein... 37 0.050
AL365277-2|CAI16413.1| 615|Homo sapiens poly(A) binding protein... 37 0.050
L26405-1|AAA58677.1| 359|Homo sapiens huc protein. 36 0.087
D26158-1|BAA21838.1| 350|Homo sapiens PLE21 protein protein. 36 0.087
BC014144-1|AAH14144.1| 367|Homo sapiens ELAVL3 protein protein. 36 0.087
AY036909-1|AAK67714.1| 360|Homo sapiens HUC protein. 36 0.087
AY034002-1|AAK57545.1| 318|Homo sapiens Hu antigen C long protein. 36 0.087
BC063113-1|AAH63113.1| 382|Homo sapiens poly(A) binding protein... 36 0.15
AY547318-1|AAS55633.1| 236|Homo sapiens unknown protein. 36 0.15
AL662874-3|CAI41476.1| 218|Homo sapiens poly(A) binding protein... 36 0.15
AL662874-2|CAI41475.1| 382|Homo sapiens poly(A) binding protein... 36 0.15
AL136305-1|CAC36889.1| 236|Homo sapiens protein ( Human DNA seq... 36 0.15
AL122118-1|CAB59276.1| 367|Homo sapiens hypothetical protein pr... 36 0.15
AK095016-1|BAC04474.1| 211|Homo sapiens protein ( Homo sapiens ... 36 0.15
AJ278963-1|CAC42826.1| 382|Homo sapiens Poly(A)-binding protein... 36 0.15
DQ120640-1|ABB92425.1| 630|Homo sapiens PABP3 protein. 35 0.20
BC045608-1|AAH45608.1| 631|Homo sapiens poly(A) binding protein... 35 0.20
BC027617-1|AAH27617.1| 631|Homo sapiens poly(A) binding protein... 35 0.20
AL359757-1|CAH70805.1| 631|Homo sapiens poly(A) binding protein... 35 0.20
AF132026-1|AAG38953.1| 631|Homo sapiens testis-specific poly(A)... 35 0.20
AB046799-1|BAB13405.1| 704|Homo sapiens KIAA1579 protein protein. 34 0.35
AY034482-1|AAK59704.1| 588|Homo sapiens hnRNP Q2 protein. 33 0.61
BC032643-1|AAH32643.1| 527|Homo sapiens SYNCRIP protein protein. 33 0.81
D12799-1|BAA02244.1| 193|Homo sapiens polyadenylate binding pro... 32 1.4
BC132973-1|AAI32974.1| 1023|Homo sapiens peroxisome proliferator... 32 1.4
BC132971-1|AAI32972.1| 1023|Homo sapiens peroxisome proliferator... 32 1.4
BC026956-1|AAH26956.1| 741|Homo sapiens PPARGC1B protein protein. 32 1.4
AY188950-1|AAO40025.1| 996|Homo sapiens peroxisome proliferator... 32 1.4
AY188949-1|AAO40024.1| 1002|Homo sapiens peroxisome proliferator... 32 1.4
AY188948-1|AAO40023.1| 1017|Homo sapiens peroxisome proliferator... 32 1.4
AY188947-1|AAO40022.1| 1023|Homo sapiens peroxisome proliferator... 32 1.4
AK095391-1|BAC04541.1| 1023|Homo sapiens protein ( Homo sapiens ... 32 1.4
AF468497-1|AAL78634.1| 984|Homo sapiens PGC-1-related estrogen ... 32 1.4
AF468496-1|AAL78633.1| 1023|Homo sapiens PGC-1-related estrogen ... 32 1.4
BC118568-1|AAI18569.1| 252|Homo sapiens PABPC4 protein protein. 31 2.5
BC106908-1|AAI06909.1| 281|Homo sapiens PABPC4 protein protein. 31 2.5
AL365277-15|CAI16425.1| 410|Homo sapiens poly(A) binding protei... 31 2.5
AK222917-1|BAD96637.1| 371|Homo sapiens PABPC4 protein variant ... 31 2.5
BC040844-1|AAH40844.1| 410|Homo sapiens SYNCRIP protein protein. 30 5.7
BC024283-1|AAH24283.1| 453|Homo sapiens Unknown (protein for IM... 30 5.7
BC015575-1|AAH15575.1| 417|Homo sapiens SYNCRIP protein protein. 30 5.7
AY034483-1|AAK59705.1| 561|Homo sapiens hnRNP Q1 protein. 30 5.7
AY034481-1|AAK59703.1| 623|Homo sapiens hnRNP Q3 protein. 30 5.7
AL360236-6|CAO03371.1| 90|Homo sapiens potassium voltage-gated... 30 5.7
AL136082-4|CAI20447.1| 623|Homo sapiens RP1-3J17.2 protein. 30 5.7
AL136082-3|CAI20446.1| 562|Homo sapiens RP1-3J17.2 protein. 30 5.7
AK222776-1|BAD96496.1| 623|Homo sapiens synaptotagmin binding, ... 30 5.7
AF155568-1|AAD38198.1| 562|Homo sapiens NSAP1 protein protein. 30 5.7
AF037448-1|AAC12926.1| 623|Homo sapiens Gry-rbp protein. 30 5.7
AB209098-1|BAD92335.1| 534|Homo sapiens synaptotagmin binding, ... 30 5.7
BC013981-1|AAH13981.1| 932|Homo sapiens RNA binding motif prote... 30 7.5
BC012787-1|AAH12787.1| 932|Homo sapiens RNA binding motif prote... 30 7.5
AL109827-23|CAB87611.1| 932|Homo sapiens RNA binding motif prot... 30 7.5
AJ289772-1|CAC20441.1| 932|Homo sapiens RNA binding motif prote... 30 7.5
AF393214-1|AAM73682.1| 932|Homo sapiens swan protein. 30 7.5
AF345335-1|AAL83755.1| 932|Homo sapiens SWAN protein. 30 7.5
AF345332-1|AAL83752.1| 932|Homo sapiens SWAN protein. 30 7.5
AB018308-1|BAA34485.2| 952|Homo sapiens KIAA0765 protein protein. 30 7.5
DQ351905-1|ABC73063.1| 595|Homo sapiens heterogeneous nuclear r... 29 9.9
BX640912-1|CAE45953.1| 613|Homo sapiens hypothetical protein pr... 29 9.9
BC110389-1|AAI10390.1| 607|Homo sapiens HNRPR protein protein. 29 9.9
BC001449-1|AAH01449.1| 636|Homo sapiens HNRPR protein protein. 29 9.9
AL845289-4|CAI12301.1| 129|Homo sapiens poly(A) binding protein... 29 9.9
AL365277-5|CAI16415.1| 129|Homo sapiens poly(A) binding protein... 29 9.9
AL109936-4|CAI19027.1| 636|Homo sapiens heterogeneous nuclear r... 29 9.9
AL109936-3|CAI19026.1| 633|Homo sapiens heterogeneous nuclear r... 29 9.9
AK074596-1|BAC11082.1| 484|Homo sapiens protein ( Homo sapiens ... 29 9.9
AF000364-1|AAC39540.1| 633|Homo sapiens heterogeneous nuclear r... 29 9.9
>X70944-1|CAA50283.1| 707|Homo sapiens PTB-associated splicing
factor protein.
Length = 707
Score = 188 bits (458), Expect = 1e-47
Identities = 96/197 (48%), Positives = 125/197 (63%)
Frame = +1
Query: 28 RVNAERAKRELDGKMRNGRTLRVRFAPHNSAVRVKNLPPFVSNELLYRAFEIFGKIERAY 207
R AE AK ELD GR LRVRFA H +A+ V+NL P+VSNELL AF FG IERA
Sbjct: 342 RALAEIAKAELDDTPMRGRQLRVRFATHAAALSVRNLSPYVSNELLEEAFSQFGPIERAV 401
Query: 208 VRVDERGKTLGEGVVEFARKPSALAAIRNCTEKCFFLTSSLRPVIVENFEEPDEFDGYPE 387
V VD+RG++ G+G+VEFA KP+A A C+E F LT++ RPVIVE E+ D+ DG PE
Sbjct: 402 VIVDDRGRSTGKGIVEFASKPAARKAFERCSEGVFLLTTTPRPVIVEPLEQLDDEDGLPE 461
Query: 388 KNLPKKHPEFMRAREVGPRFSEAGSFEHEYGTRWKQLHELHRQXXXXXXXXXXXXXXXXX 567
K L +K+P + + RE PRF++ G+FE+EY RWK L E+ +Q
Sbjct: 462 K-LAQKNPMYQKERETPPRFAQHGTFEYEYSQRWKSLDEMEKQQREQVEKNMKDAKDKLE 520
Query: 568 XQMEYAKYEHETELLRE 618
+ME A +EH+ LLR+
Sbjct: 521 SEMEDAYHEHQANLLRQ 537
>X16850-1|CAA34747.1| 396|Homo sapiens myoblast antigen 24.1D5
protein.
Length = 396
Score = 188 bits (458), Expect = 1e-47
Identities = 96/197 (48%), Positives = 125/197 (63%)
Frame = +1
Query: 28 RVNAERAKRELDGKMRNGRTLRVRFAPHNSAVRVKNLPPFVSNELLYRAFEIFGKIERAY 207
R AE AK ELD GR LRVRFA H +A+ V+NL P+VSNELL AF FG IERA
Sbjct: 31 RALAEIAKAELDDTPMRGRQLRVRFATHAAALSVRNLSPYVSNELLEEAFSQFGPIERAV 90
Query: 208 VRVDERGKTLGEGVVEFARKPSALAAIRNCTEKCFFLTSSLRPVIVENFEEPDEFDGYPE 387
V VD+RG++ G+G+VEFA KP+A A C+E F LT++ RPVIVE E+ D+ DG PE
Sbjct: 91 VIVDDRGRSTGKGIVEFASKPAARKAFERCSEGVFLLTTTPRPVIVEPLEQLDDEDGLPE 150
Query: 388 KNLPKKHPEFMRAREVGPRFSEAGSFEHEYGTRWKQLHELHRQXXXXXXXXXXXXXXXXX 567
K L +K+P + + RE PRF++ G+FE+EY RWK L E+ +Q
Sbjct: 151 K-LAQKNPMYQKERETPPRFAQHGTFEYEYSQRWKSLDEMEKQQREQVEKNMKDAKDKLE 209
Query: 568 XQMEYAKYEHETELLRE 618
+ME A +EH+ LLR+
Sbjct: 210 SEMEDAYHEHQANLLRQ 226
>BC004534-1|AAH04534.2| 634|Homo sapiens SFPQ protein protein.
Length = 634
Score = 188 bits (458), Expect = 1e-47
Identities = 96/197 (48%), Positives = 125/197 (63%)
Frame = +1
Query: 28 RVNAERAKRELDGKMRNGRTLRVRFAPHNSAVRVKNLPPFVSNELLYRAFEIFGKIERAY 207
R AE AK ELD GR LRVRFA H +A+ V+NL P+VSNELL AF FG IERA
Sbjct: 269 RALAEIAKAELDDTPMRGRQLRVRFATHAAALSVRNLSPYVSNELLEEAFSQFGPIERAV 328
Query: 208 VRVDERGKTLGEGVVEFARKPSALAAIRNCTEKCFFLTSSLRPVIVENFEEPDEFDGYPE 387
V VD+RG++ G+G+VEFA KP+A A C+E F LT++ RPVIVE E+ D+ DG PE
Sbjct: 329 VIVDDRGRSTGKGIVEFASKPAARKAFERCSEGVFLLTTTPRPVIVEPLEQLDDEDGLPE 388
Query: 388 KNLPKKHPEFMRAREVGPRFSEAGSFEHEYGTRWKQLHELHRQXXXXXXXXXXXXXXXXX 567
K L +K+P + + RE PRF++ G+FE+EY RWK L E+ +Q
Sbjct: 389 K-LAQKNPMYQKERETPPRFAQHGTFEYEYSQRWKSLDEMEKQQREQVEKNMKDAKDKLE 447
Query: 568 XQMEYAKYEHETELLRE 618
+ME A +EH+ LLR+
Sbjct: 448 SEMEDAYHEHQANLLRQ 464
>AL590434-2|CAI12467.1| 707|Homo sapiens splicing factor
proline/glutamine-rich (polypyrimidine tract binding
protein as protein.
Length = 707
Score = 188 bits (458), Expect = 1e-47
Identities = 96/197 (48%), Positives = 125/197 (63%)
Frame = +1
Query: 28 RVNAERAKRELDGKMRNGRTLRVRFAPHNSAVRVKNLPPFVSNELLYRAFEIFGKIERAY 207
R AE AK ELD GR LRVRFA H +A+ V+NL P+VSNELL AF FG IERA
Sbjct: 342 RALAEIAKAELDDTPMRGRQLRVRFATHAAALSVRNLSPYVSNELLEEAFSQFGPIERAV 401
Query: 208 VRVDERGKTLGEGVVEFARKPSALAAIRNCTEKCFFLTSSLRPVIVENFEEPDEFDGYPE 387
V VD+RG++ G+G+VEFA KP+A A C+E F LT++ RPVIVE E+ D+ DG PE
Sbjct: 402 VIVDDRGRSTGKGIVEFASKPAARKAFERCSEGVFLLTTTPRPVIVEPLEQLDDEDGLPE 461
Query: 388 KNLPKKHPEFMRAREVGPRFSEAGSFEHEYGTRWKQLHELHRQXXXXXXXXXXXXXXXXX 567
K L +K+P + + RE PRF++ G+FE+EY RWK L E+ +Q
Sbjct: 462 K-LAQKNPMYQKERETPPRFAQHGTFEYEYSQRWKSLDEMEKQQREQVEKNMKDAKDKLE 520
Query: 568 XQMEYAKYEHETELLRE 618
+ME A +EH+ LLR+
Sbjct: 521 SEMEDAYHEHQANLLRQ 537
>BC051192-1|AAH51192.1| 707|Homo sapiens splicing factor
proline/glutamine-rich (polypyrimidine tract binding
protein as protein.
Length = 707
Score = 185 bits (450), Expect = 1e-46
Identities = 95/197 (48%), Positives = 124/197 (62%)
Frame = +1
Query: 28 RVNAERAKRELDGKMRNGRTLRVRFAPHNSAVRVKNLPPFVSNELLYRAFEIFGKIERAY 207
R AE AK ELD GR LRVRFA H +A+ V+NL P+VSNELL AF FG IERA
Sbjct: 342 RALAEIAKAELDDTPMRGRQLRVRFATHAAALSVRNLSPYVSNELLEEAFSQFGPIERAV 401
Query: 208 VRVDERGKTLGEGVVEFARKPSALAAIRNCTEKCFFLTSSLRPVIVENFEEPDEFDGYPE 387
V VD+RG++ G+G+VEFA KP+A A C+E F LT++ RPVIVE E+ D+ DG PE
Sbjct: 402 VIVDDRGRSTGKGIVEFASKPAARKAFERCSEGVFLLTTTPRPVIVEPLEQLDDEDGLPE 461
Query: 388 KNLPKKHPEFMRAREVGPRFSEAGSFEHEYGTRWKQLHELHRQXXXXXXXXXXXXXXXXX 567
K L +K+P + + RE RF++ G+FE+EY RWK L E+ +Q
Sbjct: 462 K-LAQKNPMYQKERETPTRFAQHGTFEYEYSQRWKSLDEMEKQQREQVEKNMKDAKDKLE 520
Query: 568 XQMEYAKYEHETELLRE 618
+ME A +EH+ LLR+
Sbjct: 521 SEMEDAYHEHQANLLRQ 537
>CR457272-1|CAG33553.1| 357|Homo sapiens PSPC1 protein.
Length = 357
Score = 178 bits (434), Expect = 1e-44
Identities = 91/197 (46%), Positives = 123/197 (62%)
Frame = +1
Query: 28 RVNAERAKRELDGKMRNGRTLRVRFAPHNSAVRVKNLPPFVSNELLYRAFEIFGKIERAY 207
R AE AK ELDG + R LR+RFA H +A+ VKNL P VSNELL +AF FG +E+A
Sbjct: 91 RTLAEIAKAELDGTILKSRPLRIRFATHGAALTVKNLSPVVSNELLEQAFSQFGPVEKAV 150
Query: 208 VRVDERGKTLGEGVVEFARKPSALAAIRNCTEKCFFLTSSLRPVIVENFEEPDEFDGYPE 387
V VD+RG+ G+G VEFA KP A A+ C + F LT++ RPVIVE E+ D+ DG PE
Sbjct: 151 VVVDDRGRATGKGFVEFAAKPPARKALERCGDGAFLLTTTPRPVIVEPMEQFDDEDGLPE 210
Query: 388 KNLPKKHPEFMRAREVGPRFSEAGSFEHEYGTRWKQLHELHRQXXXXXXXXXXXXXXXXX 567
K L +K ++ + RE PRF++ G+FE EY +RWK L E+ +Q
Sbjct: 211 K-LMQKTQQYHKEREQPPRFAQPGTFEFEYASRWKALDEMEKQQREQVDRNIREAKEKLE 269
Query: 568 XQMEYAKYEHETELLRE 618
+ME A++EH+ L+R+
Sbjct: 270 AEMEAARHEHQLMLMRQ 286
>BC014184-1|AAH14184.2| 393|Homo sapiens PSPC1 protein protein.
Length = 393
Score = 178 bits (434), Expect = 1e-44
Identities = 91/197 (46%), Positives = 123/197 (62%)
Frame = +1
Query: 28 RVNAERAKRELDGKMRNGRTLRVRFAPHNSAVRVKNLPPFVSNELLYRAFEIFGKIERAY 207
R AE AK ELDG + R LR+RFA H +A+ VKNL P VSNELL +AF FG +E+A
Sbjct: 127 RTLAEIAKAELDGTILKSRPLRIRFATHGAALTVKNLSPVVSNELLEQAFSQFGPVEKAV 186
Query: 208 VRVDERGKTLGEGVVEFARKPSALAAIRNCTEKCFFLTSSLRPVIVENFEEPDEFDGYPE 387
V VD+RG+ G+G VEFA KP A A+ C + F LT++ RPVIVE E+ D+ DG PE
Sbjct: 187 VVVDDRGRATGKGFVEFAAKPPARKALERCGDGAFLLTTTPRPVIVEPMEQFDDEDGLPE 246
Query: 388 KNLPKKHPEFMRAREVGPRFSEAGSFEHEYGTRWKQLHELHRQXXXXXXXXXXXXXXXXX 567
K L +K ++ + RE PRF++ G+FE EY +RWK L E+ +Q
Sbjct: 247 K-LMQKTQQYHKEREQPPRFAQPGTFEFEYASRWKALDEMEKQQREQVDRNIREAKEKLE 305
Query: 568 XQMEYAKYEHETELLRE 618
+ME A++EH+ L+R+
Sbjct: 306 AEMEAARHEHQLMLMRQ 322
>AL354808-4|CAI41004.1| 523|Homo sapiens paraspeckle component 1
protein.
Length = 523
Score = 178 bits (434), Expect = 1e-44
Identities = 91/197 (46%), Positives = 123/197 (62%)
Frame = +1
Query: 28 RVNAERAKRELDGKMRNGRTLRVRFAPHNSAVRVKNLPPFVSNELLYRAFEIFGKIERAY 207
R AE AK ELDG + R LR+RFA H +A+ VKNL P VSNELL +AF FG +E+A
Sbjct: 127 RTLAEIAKAELDGTILKSRPLRIRFATHGAALTVKNLSPVVSNELLEQAFSQFGPVEKAV 186
Query: 208 VRVDERGKTLGEGVVEFARKPSALAAIRNCTEKCFFLTSSLRPVIVENFEEPDEFDGYPE 387
V VD+RG+ G+G VEFA KP A A+ C + F LT++ RPVIVE E+ D+ DG PE
Sbjct: 187 VVVDDRGRATGKGFVEFAAKPPARKALERCGDGAFLLTTTPRPVIVEPMEQFDDEDGLPE 246
Query: 388 KNLPKKHPEFMRAREVGPRFSEAGSFEHEYGTRWKQLHELHRQXXXXXXXXXXXXXXXXX 567
K L +K ++ + RE PRF++ G+FE EY +RWK L E+ +Q
Sbjct: 247 K-LMQKTQQYHKEREQPPRFAQPGTFEFEYASRWKALDEMEKQQREQVDRNIREAKEKLE 305
Query: 568 XQMEYAKYEHETELLRE 618
+ME A++EH+ L+R+
Sbjct: 306 AEMEAARHEHQLMLMRQ 322
>AK001817-1|BAA91924.1| 357|Homo sapiens protein ( Homo sapiens
cDNA FLJ10955 fis, clone PLACE1000406, moderately
similar to PTB-ASSOCIATED SPLICING FACTOR. ).
Length = 357
Score = 178 bits (434), Expect = 1e-44
Identities = 91/197 (46%), Positives = 123/197 (62%)
Frame = +1
Query: 28 RVNAERAKRELDGKMRNGRTLRVRFAPHNSAVRVKNLPPFVSNELLYRAFEIFGKIERAY 207
R AE AK ELDG + R LR+RFA H +A+ VKNL P VSNELL +AF FG +E+A
Sbjct: 91 RTLAEIAKAELDGTILKSRPLRIRFATHGAALTVKNLSPVVSNELLEQAFSQFGPVEKAV 150
Query: 208 VRVDERGKTLGEGVVEFARKPSALAAIRNCTEKCFFLTSSLRPVIVENFEEPDEFDGYPE 387
V VD+RG+ G+G VEFA KP A A+ C + F LT++ RPVIVE E+ D+ DG PE
Sbjct: 151 VVVDDRGRATGKGFVEFAAKPPARKALERCGDGAFLLTTTPRPVIVEPMEQFDDEDGLPE 210
Query: 388 KNLPKKHPEFMRAREVGPRFSEAGSFEHEYGTRWKQLHELHRQXXXXXXXXXXXXXXXXX 567
K L +K ++ + RE PRF++ G+FE EY +RWK L E+ +Q
Sbjct: 211 K-LMQKTQQYHKEREQPPRFAQPGTFEFEYASRWKALDEMEKQQREQVDRNIREAKEKLE 269
Query: 568 XQMEYAKYEHETELLRE 618
+ME A++EH+ L+R+
Sbjct: 270 AEMEAARHEHQLMLMRQ 286
>AF449627-1|AAL59602.1| 393|Homo sapiens paraspeckle protein 1 beta
isoform protein.
Length = 393
Score = 178 bits (434), Expect = 1e-44
Identities = 91/197 (46%), Positives = 123/197 (62%)
Frame = +1
Query: 28 RVNAERAKRELDGKMRNGRTLRVRFAPHNSAVRVKNLPPFVSNELLYRAFEIFGKIERAY 207
R AE AK ELDG + R LR+RFA H +A+ VKNL P VSNELL +AF FG +E+A
Sbjct: 127 RTLAEIAKAELDGTILKSRPLRIRFATHGAALTVKNLSPVVSNELLEQAFSQFGPVEKAV 186
Query: 208 VRVDERGKTLGEGVVEFARKPSALAAIRNCTEKCFFLTSSLRPVIVENFEEPDEFDGYPE 387
V VD+RG+ G+G VEFA KP A A+ C + F LT++ RPVIVE E+ D+ DG PE
Sbjct: 187 VVVDDRGRATGKGFVEFAAKPPARKALERCGDGAFLLTTTPRPVIVEPMEQFDDEDGLPE 246
Query: 388 KNLPKKHPEFMRAREVGPRFSEAGSFEHEYGTRWKQLHELHRQXXXXXXXXXXXXXXXXX 567
K L +K ++ + RE PRF++ G+FE EY +RWK L E+ +Q
Sbjct: 247 K-LMQKTQQYHKEREQPPRFAQPGTFEFEYASRWKALDEMEKQQREQVDRNIREAKEKLE 305
Query: 568 XQMEYAKYEHETELLRE 618
+ME A++EH+ L+R+
Sbjct: 306 AEMEAARHEHQLMLMRQ 322
>AF448795-1|AAL59601.1| 523|Homo sapiens paraspeckle protein 1
alpha isoform protein.
Length = 523
Score = 178 bits (434), Expect = 1e-44
Identities = 91/197 (46%), Positives = 123/197 (62%)
Frame = +1
Query: 28 RVNAERAKRELDGKMRNGRTLRVRFAPHNSAVRVKNLPPFVSNELLYRAFEIFGKIERAY 207
R AE AK ELDG + R LR+RFA H +A+ VKNL P VSNELL +AF FG +E+A
Sbjct: 127 RTLAEIAKAELDGTILKSRPLRIRFATHGAALTVKNLSPVVSNELLEQAFSQFGPVEKAV 186
Query: 208 VRVDERGKTLGEGVVEFARKPSALAAIRNCTEKCFFLTSSLRPVIVENFEEPDEFDGYPE 387
V VD+RG+ G+G VEFA KP A A+ C + F LT++ RPVIVE E+ D+ DG PE
Sbjct: 187 VVVDDRGRATGKGFVEFAAKPPARKALERCGDGAFLLTTTPRPVIVEPMEQFDDEDGLPE 246
Query: 388 KNLPKKHPEFMRAREVGPRFSEAGSFEHEYGTRWKQLHELHRQXXXXXXXXXXXXXXXXX 567
K L +K ++ + RE PRF++ G+FE EY +RWK L E+ +Q
Sbjct: 247 K-LMQKTQQYHKEREQPPRFAQPGTFEFEYASRWKALDEMEKQQREQVDRNIREAKEKLE 305
Query: 568 XQMEYAKYEHETELLRE 618
+ME A++EH+ L+R+
Sbjct: 306 AEMEAARHEHQLMLMRQ 322
>BC027708-1|AAH27708.1| 525|Homo sapiens SFPQ protein protein.
Length = 525
Score = 177 bits (431), Expect = 3e-44
Identities = 88/163 (53%), Positives = 113/163 (69%)
Frame = +1
Query: 28 RVNAERAKRELDGKMRNGRTLRVRFAPHNSAVRVKNLPPFVSNELLYRAFEIFGKIERAY 207
R AE AK ELD GR LRVRFA H +A+ V+NL P+VSNELL AF FG IERA
Sbjct: 342 RALAEIAKAELDDTPMRGRQLRVRFATHAAALSVRNLSPYVSNELLEEAFSQFGPIERAV 401
Query: 208 VRVDERGKTLGEGVVEFARKPSALAAIRNCTEKCFFLTSSLRPVIVENFEEPDEFDGYPE 387
V VD+RG++ G+G+VEFA KP+A A C+E F LT++ RPVIVE E+ D+ DG PE
Sbjct: 402 VIVDDRGRSTGKGIVEFASKPAARKAFERCSEGVFLLTTTPRPVIVEPLEQLDDEDGLPE 461
Query: 388 KNLPKKHPEFMRAREVGPRFSEAGSFEHEYGTRWKQLHELHRQ 516
K L +K+P + + RE PRF++ G+FE+EY RWK L E+ +Q
Sbjct: 462 K-LAQKNPMYQKERETPPRFAQHGTFEYEYSQRWKSLDEMEKQ 503
>L14599-1|AAC37578.1| 471|Homo sapiens protein ( Human mRNA,
complete cds. ).
Length = 471
Score = 176 bits (428), Expect = 6e-44
Identities = 89/197 (45%), Positives = 126/197 (63%)
Frame = +1
Query: 28 RVNAERAKRELDGKMRNGRTLRVRFAPHNSAVRVKNLPPFVSNELLYRAFEIFGKIERAY 207
R AE AK ELD G+ LRVRFA H++++ V+NLP +VSNELL AF +FG++ERA
Sbjct: 119 RTLAEIAKVELDNMPLRGKQLRVRFACHSASLHVRNLPQYVSNELLEEAFSVFGQVERAV 178
Query: 208 VRVDERGKTLGEGVVEFARKPSALAAIRNCTEKCFFLTSSLRPVIVENFEEPDEFDGYPE 387
V VD+RG+ G+G+VEF+ KP+A A+ C+E F LT+ RPV VE ++ D+ +G PE
Sbjct: 179 VIVDDRGRPSGKGIVEFSGKPAARKALDRCSEGSFLLTTFPRPVTVEPMDQLDDEEGLPE 238
Query: 388 KNLPKKHPEFMRAREVGPRFSEAGSFEHEYGTRWKQLHELHRQXXXXXXXXXXXXXXXXX 567
K L K+ +F + RE PRF++ GSFE+EY RWK L E+ +Q
Sbjct: 239 K-LVIKNQQFHKEREQPPRFAQPGSFEYEYAMRWKALIEMEKQQQDQVDRNIKEAREKLE 297
Query: 568 XQMEYAKYEHETELLRE 618
+ME A++EH+ L+R+
Sbjct: 298 MEMEAARHEHQVMLMRQ 314
Score = 30.3 bits (65), Expect = 5.7
Identities = 17/66 (25%), Positives = 33/66 (50%), Gaps = 3/66 (4%)
Frame = +1
Query: 34 NAERAKRELDG---KMRNGRTLRVRFAPHNSAVRVKNLPPFVSNELLYRAFEIFGKIERA 204
N ++A + +G ++N R + S + V NLPP ++ E + + FE +GK
Sbjct: 44 NGQQASSQNEGLTIDLKNFRKPGEKTFTQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEV 103
Query: 205 YVRVDE 222
++ D+
Sbjct: 104 FIHKDK 109
>Y11289-1|CAA72157.1| 471|Homo sapiens p54nrb protein.
Length = 471
Score = 175 bits (427), Expect = 8e-44
Identities = 89/197 (45%), Positives = 126/197 (63%)
Frame = +1
Query: 28 RVNAERAKRELDGKMRNGRTLRVRFAPHNSAVRVKNLPPFVSNELLYRAFEIFGKIERAY 207
R AE AK ELD G+ LRVRFA H++++ V+NLP +VSNELL AF +FG++ERA
Sbjct: 119 RTLAEIAKVELDNMPLRGKQLRVRFACHSASLTVRNLPQYVSNELLEEAFSVFGQVERAV 178
Query: 208 VRVDERGKTLGEGVVEFARKPSALAAIRNCTEKCFFLTSSLRPVIVENFEEPDEFDGYPE 387
V VD+RG+ G+G+VEF+ KP+A A+ C+E F LT+ RPV VE ++ D+ +G PE
Sbjct: 179 VIVDDRGRPSGKGIVEFSGKPAARKALDRCSEGSFLLTTFPRPVTVEPMDQLDDEEGLPE 238
Query: 388 KNLPKKHPEFMRAREVGPRFSEAGSFEHEYGTRWKQLHELHRQXXXXXXXXXXXXXXXXX 567
K L K+ +F + RE PRF++ GSFE+EY RWK L E+ +Q
Sbjct: 239 K-LVIKNQQFHKEREQPPRFAQPGSFEYEYAMRWKALIEMEKQQQDQVDRNIKEAREKLE 297
Query: 568 XQMEYAKYEHETELLRE 618
+ME A++EH+ L+R+
Sbjct: 298 MEMEAARHEHQVMLMRQ 314
Score = 30.3 bits (65), Expect = 5.7
Identities = 17/66 (25%), Positives = 33/66 (50%), Gaps = 3/66 (4%)
Frame = +1
Query: 34 NAERAKRELDG---KMRNGRTLRVRFAPHNSAVRVKNLPPFVSNELLYRAFEIFGKIERA 204
N ++A + +G ++N R + S + V NLPP ++ E + + FE +GK
Sbjct: 44 NGQQASSQNEGLTIDLKNFRKPGEKTFTQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEV 103
Query: 205 YVRVDE 222
++ D+
Sbjct: 104 FIHKDK 109
>U89867-1|AAC51852.1| 471|Homo sapiens nuclear matrix protein 55
protein.
Length = 471
Score = 175 bits (427), Expect = 8e-44
Identities = 89/197 (45%), Positives = 126/197 (63%)
Frame = +1
Query: 28 RVNAERAKRELDGKMRNGRTLRVRFAPHNSAVRVKNLPPFVSNELLYRAFEIFGKIERAY 207
R AE AK ELD G+ LRVRFA H++++ V+NLP +VSNELL AF +FG++ERA
Sbjct: 119 RTLAEIAKVELDNMPLRGKQLRVRFACHSASLTVRNLPQYVSNELLEEAFSVFGQVERAV 178
Query: 208 VRVDERGKTLGEGVVEFARKPSALAAIRNCTEKCFFLTSSLRPVIVENFEEPDEFDGYPE 387
V VD+RG+ G+G+VEF+ KP+A A+ C+E F LT+ RPV VE ++ D+ +G PE
Sbjct: 179 VIVDDRGRPSGKGIVEFSGKPAARKALDRCSEGSFLLTTFPRPVTVEPMDQLDDEEGLPE 238
Query: 388 KNLPKKHPEFMRAREVGPRFSEAGSFEHEYGTRWKQLHELHRQXXXXXXXXXXXXXXXXX 567
K L K+ +F + RE PRF++ GSFE+EY RWK L E+ +Q
Sbjct: 239 K-LVIKNQQFHKEREQPPRFAQPGSFEYEYAMRWKALIEMEKQQQDQVDRNIKEAREKLE 297
Query: 568 XQMEYAKYEHETELLRE 618
+ME A++EH+ L+R+
Sbjct: 298 MEMEAARHEHQVMLMRQ 314
Score = 30.3 bits (65), Expect = 5.7
Identities = 17/66 (25%), Positives = 33/66 (50%), Gaps = 3/66 (4%)
Frame = +1
Query: 34 NAERAKRELDG---KMRNGRTLRVRFAPHNSAVRVKNLPPFVSNELLYRAFEIFGKIERA 204
N ++A + +G ++N R + S + V NLPP ++ E + + FE +GK
Sbjct: 44 NGQQASSQNEGLTIDLKNFRKPGEKTFTQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEV 103
Query: 205 YVRVDE 222
++ D+
Sbjct: 104 FIHKDK 109
>U02493-1|AAA03427.1| 471|Homo sapiens 54 kDa protein protein.
Length = 471
Score = 175 bits (427), Expect = 8e-44
Identities = 89/197 (45%), Positives = 126/197 (63%)
Frame = +1
Query: 28 RVNAERAKRELDGKMRNGRTLRVRFAPHNSAVRVKNLPPFVSNELLYRAFEIFGKIERAY 207
R AE AK ELD G+ LRVRFA H++++ V+NLP +VSNELL AF +FG++ERA
Sbjct: 119 RTLAEIAKVELDNMPLRGKQLRVRFACHSASLTVRNLPQYVSNELLEEAFSVFGQVERAV 178
Query: 208 VRVDERGKTLGEGVVEFARKPSALAAIRNCTEKCFFLTSSLRPVIVENFEEPDEFDGYPE 387
V VD+RG+ G+G+VEF+ KP+A A+ C+E F LT+ RPV VE ++ D+ +G PE
Sbjct: 179 VIVDDRGRPSGKGIVEFSGKPAARKALDRCSEGSFLLTTFPRPVTVEPMDQLDDEEGLPE 238
Query: 388 KNLPKKHPEFMRAREVGPRFSEAGSFEHEYGTRWKQLHELHRQXXXXXXXXXXXXXXXXX 567
K L K+ +F + RE PRF++ GSFE+EY RWK L E+ +Q
Sbjct: 239 K-LVIKNQQFHKEREQPPRFAQPGSFEYEYAMRWKALIEMEKQQQDQVDRNIKEAREKLE 297
Query: 568 XQMEYAKYEHETELLRE 618
+ME A++EH+ L+R+
Sbjct: 298 MEMEAARHEHQVMLMRQ 314
Score = 30.3 bits (65), Expect = 5.7
Identities = 17/66 (25%), Positives = 33/66 (50%), Gaps = 3/66 (4%)
Frame = +1
Query: 34 NAERAKRELDG---KMRNGRTLRVRFAPHNSAVRVKNLPPFVSNELLYRAFEIFGKIERA 204
N ++A + +G ++N R + S + V NLPP ++ E + + FE +GK
Sbjct: 44 NGQQASSQNEGLTIDLKNFRKPGEKTFTQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEV 103
Query: 205 YVRVDE 222
++ D+
Sbjct: 104 FIHKDK 109
>CR456761-1|CAG33042.1| 471|Homo sapiens NONO protein.
Length = 471
Score = 175 bits (427), Expect = 8e-44
Identities = 89/197 (45%), Positives = 126/197 (63%)
Frame = +1
Query: 28 RVNAERAKRELDGKMRNGRTLRVRFAPHNSAVRVKNLPPFVSNELLYRAFEIFGKIERAY 207
R AE AK ELD G+ LRVRFA H++++ V+NLP +VSNELL AF +FG++ERA
Sbjct: 119 RTLAEIAKVELDNMPLRGKQLRVRFACHSASLTVRNLPQYVSNELLEEAFSVFGQVERAV 178
Query: 208 VRVDERGKTLGEGVVEFARKPSALAAIRNCTEKCFFLTSSLRPVIVENFEEPDEFDGYPE 387
V VD+RG+ G+G+VEF+ KP+A A+ C+E F LT+ RPV VE ++ D+ +G PE
Sbjct: 179 VIVDDRGRPSGKGIVEFSGKPAARKALDRCSEGSFLLTTFPRPVTVEPMDQLDDEEGLPE 238
Query: 388 KNLPKKHPEFMRAREVGPRFSEAGSFEHEYGTRWKQLHELHRQXXXXXXXXXXXXXXXXX 567
K L K+ +F + RE PRF++ GSFE+EY RWK L E+ +Q
Sbjct: 239 K-LVIKNQQFHKEREQPPRFAQPGSFEYEYAMRWKALIEMEKQQQDQVDRNIKEAREKLE 297
Query: 568 XQMEYAKYEHETELLRE 618
+ME A++EH+ L+R+
Sbjct: 298 MEMEAARHEHQVMLMRQ 314
Score = 30.3 bits (65), Expect = 5.7
Identities = 17/66 (25%), Positives = 33/66 (50%), Gaps = 3/66 (4%)
Frame = +1
Query: 34 NAERAKRELDG---KMRNGRTLRVRFAPHNSAVRVKNLPPFVSNELLYRAFEIFGKIERA 204
N ++A + +G ++N R + S + V NLPP ++ E + + FE +GK
Sbjct: 44 NGQQASSQNEGLTIDLKNFRKPGEKTFTQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEV 103
Query: 205 YVRVDE 222
++ D+
Sbjct: 104 FIHKDK 109
>BC069639-1|AAH69639.1| 471|Homo sapiens non-POU domain containing,
octamer-binding protein.
Length = 471
Score = 175 bits (427), Expect = 8e-44
Identities = 89/197 (45%), Positives = 126/197 (63%)
Frame = +1
Query: 28 RVNAERAKRELDGKMRNGRTLRVRFAPHNSAVRVKNLPPFVSNELLYRAFEIFGKIERAY 207
R AE AK ELD G+ LRVRFA H++++ V+NLP +VSNELL AF +FG++ERA
Sbjct: 119 RTLAEIAKVELDNMPLRGKQLRVRFACHSASLTVRNLPQYVSNELLEEAFSVFGQVERAV 178
Query: 208 VRVDERGKTLGEGVVEFARKPSALAAIRNCTEKCFFLTSSLRPVIVENFEEPDEFDGYPE 387
V VD+RG+ G+G+VEF+ KP+A A+ C+E F LT+ RPV VE ++ D+ +G PE
Sbjct: 179 VIVDDRGRPSGKGIVEFSGKPAARKALDRCSEGSFLLTTFPRPVTVEPMDQLDDEEGLPE 238
Query: 388 KNLPKKHPEFMRAREVGPRFSEAGSFEHEYGTRWKQLHELHRQXXXXXXXXXXXXXXXXX 567
K L K+ +F + RE PRF++ GSFE+EY RWK L E+ +Q
Sbjct: 239 K-LVIKNQQFHKEREQPPRFAQPGSFEYEYAMRWKALIEMEKQQQDQVDRNIKEAREKLE 297
Query: 568 XQMEYAKYEHETELLRE 618
+ME A++EH+ L+R+
Sbjct: 298 MEMEAARHEHQVMLMRQ 314
Score = 30.3 bits (65), Expect = 5.7
Identities = 17/66 (25%), Positives = 33/66 (50%), Gaps = 3/66 (4%)
Frame = +1
Query: 34 NAERAKRELDG---KMRNGRTLRVRFAPHNSAVRVKNLPPFVSNELLYRAFEIFGKIERA 204
N ++A + +G ++N R + S + V NLPP ++ E + + FE +GK
Sbjct: 44 NGQQASSQNEGLTIDLKNFRKPGEKTFTQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEV 103
Query: 205 YVRVDE 222
++ D+
Sbjct: 104 FIHKDK 109
>BC069616-1|AAH69616.1| 471|Homo sapiens non-POU domain containing,
octamer-binding protein.
Length = 471
Score = 175 bits (427), Expect = 8e-44
Identities = 89/197 (45%), Positives = 126/197 (63%)
Frame = +1
Query: 28 RVNAERAKRELDGKMRNGRTLRVRFAPHNSAVRVKNLPPFVSNELLYRAFEIFGKIERAY 207
R AE AK ELD G+ LRVRFA H++++ V+NLP +VSNELL AF +FG++ERA
Sbjct: 119 RTLAEIAKVELDNMPLRGKQLRVRFACHSASLTVRNLPQYVSNELLEEAFSVFGQVERAV 178
Query: 208 VRVDERGKTLGEGVVEFARKPSALAAIRNCTEKCFFLTSSLRPVIVENFEEPDEFDGYPE 387
V VD+RG+ G+G+VEF+ KP+A A+ C+E F LT+ RPV VE ++ D+ +G PE
Sbjct: 179 VIVDDRGRPSGKGIVEFSGKPAARKALDRCSEGSFLLTTFPRPVTVEPMDQLDDEEGLPE 238
Query: 388 KNLPKKHPEFMRAREVGPRFSEAGSFEHEYGTRWKQLHELHRQXXXXXXXXXXXXXXXXX 567
K L K+ +F + RE PRF++ GSFE+EY RWK L E+ +Q
Sbjct: 239 K-LVIKNQQFHKEREQPPRFAQPGSFEYEYAMRWKALIEMEKQQQDQVDRNIKEAREKLE 297
Query: 568 XQMEYAKYEHETELLRE 618
+ME A++EH+ L+R+
Sbjct: 298 MEMEAARHEHQVMLMRQ 314
Score = 30.3 bits (65), Expect = 5.7
Identities = 17/66 (25%), Positives = 33/66 (50%), Gaps = 3/66 (4%)
Frame = +1
Query: 34 NAERAKRELDG---KMRNGRTLRVRFAPHNSAVRVKNLPPFVSNELLYRAFEIFGKIERA 204
N ++A + +G ++N R + S + V NLPP ++ E + + FE +GK
Sbjct: 44 NGQQASSQNEGLTIDLKNFRKPGEKTFTQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEV 103
Query: 205 YVRVDE 222
++ D+
Sbjct: 104 FIHKDK 109
>BC028299-1|AAH28299.1| 471|Homo sapiens non-POU domain containing,
octamer-binding protein.
Length = 471
Score = 175 bits (427), Expect = 8e-44
Identities = 89/197 (45%), Positives = 126/197 (63%)
Frame = +1
Query: 28 RVNAERAKRELDGKMRNGRTLRVRFAPHNSAVRVKNLPPFVSNELLYRAFEIFGKIERAY 207
R AE AK ELD G+ LRVRFA H++++ V+NLP +VSNELL AF +FG++ERA
Sbjct: 119 RTLAEIAKVELDNMPLRGKQLRVRFACHSASLTVRNLPQYVSNELLEEAFSVFGQVERAV 178
Query: 208 VRVDERGKTLGEGVVEFARKPSALAAIRNCTEKCFFLTSSLRPVIVENFEEPDEFDGYPE 387
V VD+RG+ G+G+VEF+ KP+A A+ C+E F LT+ RPV VE ++ D+ +G PE
Sbjct: 179 VIVDDRGRPSGKGIVEFSGKPAARKALDRCSEGSFLLTTFPRPVTVEPMDQLDDEEGLPE 238
Query: 388 KNLPKKHPEFMRAREVGPRFSEAGSFEHEYGTRWKQLHELHRQXXXXXXXXXXXXXXXXX 567
K L K+ +F + RE PRF++ GSFE+EY RWK L E+ +Q
Sbjct: 239 K-LVIKNQQFHKEREQPPRFAQPGSFEYEYAMRWKALIEMEKQQQDQVDRNIKEAREKLE 297
Query: 568 XQMEYAKYEHETELLRE 618
+ME A++EH+ L+R+
Sbjct: 298 MEMEAARHEHQVMLMRQ 314
Score = 30.3 bits (65), Expect = 5.7
Identities = 17/66 (25%), Positives = 33/66 (50%), Gaps = 3/66 (4%)
Frame = +1
Query: 34 NAERAKRELDG---KMRNGRTLRVRFAPHNSAVRVKNLPPFVSNELLYRAFEIFGKIERA 204
N ++A + +G ++N R + S + V NLPP ++ E + + FE +GK
Sbjct: 44 NGQQASSQNEGLTIDLKNFRKPGEKTFTQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEV 103
Query: 205 YVRVDE 222
++ D+
Sbjct: 104 FIHKDK 109
>BC012141-1|AAH12141.1| 471|Homo sapiens NONO protein protein.
Length = 471
Score = 175 bits (427), Expect = 8e-44
Identities = 89/197 (45%), Positives = 126/197 (63%)
Frame = +1
Query: 28 RVNAERAKRELDGKMRNGRTLRVRFAPHNSAVRVKNLPPFVSNELLYRAFEIFGKIERAY 207
R AE AK ELD G+ LRVRFA H++++ V+NLP +VSNELL AF +FG++ERA
Sbjct: 119 RTLAEIAKVELDNMPLRGKQLRVRFACHSASLTVRNLPQYVSNELLEEAFSVFGQVERAV 178
Query: 208 VRVDERGKTLGEGVVEFARKPSALAAIRNCTEKCFFLTSSLRPVIVENFEEPDEFDGYPE 387
V VD+RG+ G+G+VEF+ KP+A A+ C+E F LT+ RPV VE ++ D+ +G PE
Sbjct: 179 VIVDDRGRPSGKGIVEFSGKPAARKALDRCSEGSFLLTTFPRPVTVEPMDQLDDEEGLPE 238
Query: 388 KNLPKKHPEFMRAREVGPRFSEAGSFEHEYGTRWKQLHELHRQXXXXXXXXXXXXXXXXX 567
K L K+ +F + RE PRF++ GSFE+EY RWK L E+ +Q
Sbjct: 239 K-LVIKNQQFHKEREQPPRFAQPGSFEYEYAMRWKALIEMEKQQQDQVDRNIKEAREKLE 297
Query: 568 XQMEYAKYEHETELLRE 618
+ME A++EH+ L+R+
Sbjct: 298 MEMEAARHEHQVMLMRQ 314
Score = 30.3 bits (65), Expect = 5.7
Identities = 17/66 (25%), Positives = 33/66 (50%), Gaps = 3/66 (4%)
Frame = +1
Query: 34 NAERAKRELDG---KMRNGRTLRVRFAPHNSAVRVKNLPPFVSNELLYRAFEIFGKIERA 204
N ++A + +G ++N R + S + V NLPP ++ E + + FE +GK
Sbjct: 44 NGQQASSQNEGLTIDLKNFRKPGEKTFTQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEV 103
Query: 205 YVRVDE 222
++ D+
Sbjct: 104 FIHKDK 109
>BC003129-1|AAH03129.1| 471|Homo sapiens NONO protein protein.
Length = 471
Score = 175 bits (427), Expect = 8e-44
Identities = 89/197 (45%), Positives = 126/197 (63%)
Frame = +1
Query: 28 RVNAERAKRELDGKMRNGRTLRVRFAPHNSAVRVKNLPPFVSNELLYRAFEIFGKIERAY 207
R AE AK ELD G+ LRVRFA H++++ V+NLP +VSNELL AF +FG++ERA
Sbjct: 119 RTLAEIAKVELDNMPLRGKQLRVRFACHSASLTVRNLPQYVSNELLEEAFSVFGQVERAV 178
Query: 208 VRVDERGKTLGEGVVEFARKPSALAAIRNCTEKCFFLTSSLRPVIVENFEEPDEFDGYPE 387
V VD+RG+ G+G+VEF+ KP+A A+ C+E F LT+ RPV VE ++ D+ +G PE
Sbjct: 179 VIVDDRGRPSGKGIVEFSGKPAARKALDRCSEGSFLLTTFPRPVTVEPMDQLDDEEGLPE 238
Query: 388 KNLPKKHPEFMRAREVGPRFSEAGSFEHEYGTRWKQLHELHRQXXXXXXXXXXXXXXXXX 567
K L K+ +F + RE PRF++ GSFE+EY RWK L E+ +Q
Sbjct: 239 K-LVIKNQQFHKEREQPPRFAQPGSFEYEYAMRWKALIEMEKQQQDQVDRNIKEAREKLE 297
Query: 568 XQMEYAKYEHETELLRE 618
+ME A++EH+ L+R+
Sbjct: 298 MEMEAARHEHQVMLMRQ 314
Score = 30.3 bits (65), Expect = 5.7
Identities = 17/66 (25%), Positives = 33/66 (50%), Gaps = 3/66 (4%)
Frame = +1
Query: 34 NAERAKRELDG---KMRNGRTLRVRFAPHNSAVRVKNLPPFVSNELLYRAFEIFGKIERA 204
N ++A + +G ++N R + S + V NLPP ++ E + + FE +GK
Sbjct: 44 NGQQASSQNEGLTIDLKNFRKPGEKTFTQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEV 103
Query: 205 YVRVDE 222
++ D+
Sbjct: 104 FIHKDK 109
>BC002364-1|AAH02364.1| 471|Homo sapiens non-POU domain containing,
octamer-binding protein.
Length = 471
Score = 175 bits (427), Expect = 8e-44
Identities = 89/197 (45%), Positives = 126/197 (63%)
Frame = +1
Query: 28 RVNAERAKRELDGKMRNGRTLRVRFAPHNSAVRVKNLPPFVSNELLYRAFEIFGKIERAY 207
R AE AK ELD G+ LRVRFA H++++ V+NLP +VSNELL AF +FG++ERA
Sbjct: 119 RTLAEIAKVELDNMPLRGKQLRVRFACHSASLTVRNLPQYVSNELLEEAFSVFGQVERAV 178
Query: 208 VRVDERGKTLGEGVVEFARKPSALAAIRNCTEKCFFLTSSLRPVIVENFEEPDEFDGYPE 387
V VD+RG+ G+G+VEF+ KP+A A+ C+E F LT+ RPV VE ++ D+ +G PE
Sbjct: 179 VIVDDRGRPSGKGIVEFSGKPAARKALDRCSEGSFLLTTFPRPVTVEPMDQLDDEEGLPE 238
Query: 388 KNLPKKHPEFMRAREVGPRFSEAGSFEHEYGTRWKQLHELHRQXXXXXXXXXXXXXXXXX 567
K L K+ +F + RE PRF++ GSFE+EY RWK L E+ +Q
Sbjct: 239 K-LVIKNQQFHKEREQPPRFAQPGSFEYEYAMRWKALIEMEKQQQDQVDRNIKEAREKLE 297
Query: 568 XQMEYAKYEHETELLRE 618
+ME A++EH+ L+R+
Sbjct: 298 MEMEAARHEHQVMLMRQ 314
Score = 30.3 bits (65), Expect = 5.7
Identities = 17/66 (25%), Positives = 33/66 (50%), Gaps = 3/66 (4%)
Frame = +1
Query: 34 NAERAKRELDG---KMRNGRTLRVRFAPHNSAVRVKNLPPFVSNELLYRAFEIFGKIERA 204
N ++A + +G ++N R + S + V NLPP ++ E + + FE +GK
Sbjct: 44 NGQQASSQNEGLTIDLKNFRKPGEKTFTQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEV 103
Query: 205 YVRVDE 222
++ D+
Sbjct: 104 FIHKDK 109
>AL354808-5|CAI41005.1| 248|Homo sapiens paraspeckle component 1
protein.
Length = 248
Score = 131 bits (316), Expect = 2e-30
Identities = 66/121 (54%), Positives = 82/121 (67%)
Frame = +1
Query: 28 RVNAERAKRELDGKMRNGRTLRVRFAPHNSAVRVKNLPPFVSNELLYRAFEIFGKIERAY 207
R AE AK ELDG + R LR+RFA H +A+ VKNL P VSNELL +AF FG +E+A
Sbjct: 127 RTLAEIAKAELDGTILKSRPLRIRFATHGAALTVKNLSPVVSNELLEQAFSQFGPVEKAV 186
Query: 208 VRVDERGKTLGEGVVEFARKPSALAAIRNCTEKCFFLTSSLRPVIVENFEEPDEFDGYPE 387
V VD+RG+ G+G VEFA KP A A+ C + F LT++ RPVIVE E+ D+ DG PE
Sbjct: 187 VVVDDRGRATGKGFVEFAAKPPARKALERCGDGAFLLTTTPRPVIVEPMEQFDDEDGLPE 246
Query: 388 K 390
K
Sbjct: 247 K 247
>AL834505-1|CAD39162.1| 202|Homo sapiens hypothetical protein
protein.
Length = 202
Score = 109 bits (262), Expect = 8e-24
Identities = 54/132 (40%), Positives = 78/132 (59%)
Frame = +1
Query: 223 RGKTLGEGVVEFARKPSALAAIRNCTEKCFFLTSSLRPVIVENFEEPDEFDGYPEKNLPK 402
RG+ G+G VEFA KP A A+ C + F LT++ RPVIVE E+ D+ DG PEK L +
Sbjct: 1 RGRATGKGFVEFAAKPPARKALERCGDGAFLLTTTPRPVIVEPMEQFDDEDGLPEK-LMQ 59
Query: 403 KHPEFMRAREVGPRFSEAGSFEHEYGTRWKQLHELHRQXXXXXXXXXXXXXXXXXXQMEY 582
K ++ + RE PRF++ G+FE EY +RWK L E+ +Q +ME
Sbjct: 60 KTQQYHKEREQPPRFAQPGTFEFEYASRWKALDEMEKQQREQVDRNIREAKEKLEAEMEA 119
Query: 583 AKYEHETELLRE 618
A++EH+ L+R+
Sbjct: 120 ARHEHQLMLMRQ 131
>BC041956-1|AAH41956.1| 243|Homo sapiens LOC645974 protein protein.
Length = 243
Score = 45.6 bits (103), Expect = 1e-04
Identities = 31/94 (32%), Positives = 48/94 (51%), Gaps = 8/94 (8%)
Frame = +1
Query: 31 VNAERAKRELDGKMRNGRTLRVRFAPHNSAVR--------VKNLPPFVSNELLYRAFEIF 186
V+A+RA L+ + GR +R+ ++ + ++R +KNL + N+ LY F F
Sbjct: 97 VDAKRALETLNFDVIKGRPVRIMWSQRDPSLRKSGVGNVFIKNLGKTIDNKALYNIFSAF 156
Query: 187 GKIERAYVRVDERGKTLGEGVVEFARKPSALAAI 288
G I V DE+G G G V F ++ SA AI
Sbjct: 157 GNILSCKVACDEKGPK-GYGFVHFQKQESAERAI 189
>AL662864-2|CAI40931.1| 200|Homo sapiens novel protein similar to
poly(A)binding protein, cytoplasmic 1 (LOC340530)
protein.
Length = 200
Score = 45.6 bits (103), Expect = 1e-04
Identities = 31/94 (32%), Positives = 48/94 (51%), Gaps = 8/94 (8%)
Frame = +1
Query: 31 VNAERAKRELDGKMRNGRTLRVRFAPHNSAVR--------VKNLPPFVSNELLYRAFEIF 186
V+A+RA L+ + GR +R+ ++ + ++R +KNL + N+ LY F F
Sbjct: 54 VDAKRALETLNFDVIKGRPVRIMWSQRDPSLRKSGVGNVFIKNLGKTIDNKALYNIFSAF 113
Query: 187 GKIERAYVRVDERGKTLGEGVVEFARKPSALAAI 288
G I V DE+G G G V F ++ SA AI
Sbjct: 114 GNILSCKVACDEKGPK-GYGFVHFQKQESAERAI 146
>AL662864-1|CAI40930.1| 200|Homo sapiens novel protein similar to
poly(A)binding protein, cytoplasmic 1 (LOC340529)
protein.
Length = 200
Score = 45.6 bits (103), Expect = 1e-04
Identities = 31/94 (32%), Positives = 48/94 (51%), Gaps = 8/94 (8%)
Frame = +1
Query: 31 VNAERAKRELDGKMRNGRTLRVRFAPHNSAVR--------VKNLPPFVSNELLYRAFEIF 186
V+A+RA L+ + GR +R+ ++ + ++R +KNL + N+ LY F F
Sbjct: 54 VDAKRALETLNFDVIKGRPVRIMWSQRDPSLRKSGVGNVFIKNLGKTIDNKALYNIFSAF 113
Query: 187 GKIERAYVRVDERGKTLGEGVVEFARKPSALAAI 288
G I V DE+G G G V F ++ SA AI
Sbjct: 114 GNILSCKVACDEKGPK-GYGFVHFQKQESAERAI 146
>BC037428-1|AAH37428.1| 606|Homo sapiens RAVER1 protein protein.
Length = 606
Score = 42.7 bits (96), Expect = 0.001
Identities = 23/69 (33%), Positives = 37/69 (53%), Gaps = 1/69 (1%)
Frame = +1
Query: 82 RTLRVRFAPHNSAVRVKNLPPFVSNELLYRAFEIFGKIERAYVRVDER-GKTLGEGVVEF 258
R L V+ P ++ + V NLPP ++ + FG +ER ++ ER G++ G G E+
Sbjct: 121 RELSVQLQPTDALLCVANLPPSLTQQQFEELVRPFGSLERCFLVYSERTGQSKGYGFAEY 180
Query: 259 ARKPSALAA 285
+K SA A
Sbjct: 181 MKKDSAARA 189
>AB075858-1|BAB85564.1| 384|Homo sapiens KIAA1978 protein protein.
Length = 384
Score = 42.7 bits (96), Expect = 0.001
Identities = 23/69 (33%), Positives = 37/69 (53%), Gaps = 1/69 (1%)
Frame = +1
Query: 82 RTLRVRFAPHNSAVRVKNLPPFVSNELLYRAFEIFGKIERAYVRVDER-GKTLGEGVVEF 258
R L V+ P ++ + V NLPP ++ + FG +ER ++ ER G++ G G E+
Sbjct: 42 RELSVQLQPTDALLCVANLPPSLTQQQFEELVRPFGSLERCFLVYSERTGQSKGYGFAEY 101
Query: 259 ARKPSALAA 285
+K SA A
Sbjct: 102 MKKDSAARA 110
>AL109839-2|CAI95632.1| 330|Homo sapiens chromosome 20 open reading
frame 119 protein.
Length = 330
Score = 41.5 bits (93), Expect = 0.002
Identities = 29/93 (31%), Positives = 45/93 (48%), Gaps = 8/93 (8%)
Frame = +1
Query: 34 NAERAKRELDGKMRNGRTLRVRFAPHNSAVR--------VKNLPPFVSNELLYRAFEIFG 189
+AERA ++ +M G+ +R+ ++ + +R +KNL + N+ LY F FG
Sbjct: 64 DAERALDTMNFEMLKGQPIRIMWSQRDPGLRKSGVGNIFIKNLEDSIDNKALYDTFSTFG 123
Query: 190 KIERAYVRVDERGKTLGEGVVEFARKPSALAAI 288
I V DE G + G G V F +A AI
Sbjct: 124 NILSCKVACDEHG-SRGFGFVHFETHEAAQQAI 155
Score = 29.9 bits (64), Expect = 7.5
Identities = 19/56 (33%), Positives = 25/56 (44%)
Frame = +1
Query: 121 VRVKNLPPFVSNELLYRAFEIFGKIERAYVRVDERGKTLGEGVVEFARKPSALAAI 288
+ VKNLP V + L F FGK+ V D G + G V F + A A+
Sbjct: 193 IYVKNLPVDVDEQGLQDLFSQFGKMLSVKVMRDNSGHSRCFGFVNFEKHEEAQKAV 248
>AL109839-1|CAI95631.1| 614|Homo sapiens chromosome 20 open reading
frame 119 protein.
Length = 614
Score = 41.5 bits (93), Expect = 0.002
Identities = 29/93 (31%), Positives = 45/93 (48%), Gaps = 8/93 (8%)
Frame = +1
Query: 34 NAERAKRELDGKMRNGRTLRVRFAPHNSAVR--------VKNLPPFVSNELLYRAFEIFG 189
+AERA ++ +M G+ +R+ ++ + +R +KNL + N+ LY F FG
Sbjct: 64 DAERALDTMNFEMLKGQPIRIMWSQRDPGLRKSGVGNIFIKNLEDSIDNKALYDTFSTFG 123
Query: 190 KIERAYVRVDERGKTLGEGVVEFARKPSALAAI 288
I V DE G + G G V F +A AI
Sbjct: 124 NILSCKVACDEHG-SRGFGFVHFETHEAAQQAI 155
Score = 29.9 bits (64), Expect = 7.5
Identities = 19/56 (33%), Positives = 25/56 (44%)
Frame = +1
Query: 121 VRVKNLPPFVSNELLYRAFEIFGKIERAYVRVDERGKTLGEGVVEFARKPSALAAI 288
+ VKNLP V + L F FGK+ V D G + G V F + A A+
Sbjct: 193 IYVKNLPVDVDEQGLQDLFSQFGKMLSVKVMRDNSGHSRCFGFVNFEKHEEAQKAV 248
>AL008725-5|CAI95663.1| 330|Homo sapiens chromosome 20 open reading
frame 119 protein.
Length = 330
Score = 41.5 bits (93), Expect = 0.002
Identities = 29/93 (31%), Positives = 45/93 (48%), Gaps = 8/93 (8%)
Frame = +1
Query: 34 NAERAKRELDGKMRNGRTLRVRFAPHNSAVR--------VKNLPPFVSNELLYRAFEIFG 189
+AERA ++ +M G+ +R+ ++ + +R +KNL + N+ LY F FG
Sbjct: 64 DAERALDTMNFEMLKGQPIRIMWSQRDPGLRKSGVGNIFIKNLEDSIDNKALYDTFSTFG 123
Query: 190 KIERAYVRVDERGKTLGEGVVEFARKPSALAAI 288
I V DE G + G G V F +A AI
Sbjct: 124 NILSCKVACDEHG-SRGFGFVHFETHEAAQQAI 155
Score = 29.9 bits (64), Expect = 7.5
Identities = 19/56 (33%), Positives = 25/56 (44%)
Frame = +1
Query: 121 VRVKNLPPFVSNELLYRAFEIFGKIERAYVRVDERGKTLGEGVVEFARKPSALAAI 288
+ VKNLP V + L F FGK+ V D G + G V F + A A+
Sbjct: 193 IYVKNLPVDVDEQGLQDLFSQFGKMLSVKVMRDNSGHSRCFGFVNFEKHEEAQKAV 248
>AL008725-4|CAI95662.1| 614|Homo sapiens chromosome 20 open reading
frame 119 protein.
Length = 614
Score = 41.5 bits (93), Expect = 0.002
Identities = 29/93 (31%), Positives = 45/93 (48%), Gaps = 8/93 (8%)
Frame = +1
Query: 34 NAERAKRELDGKMRNGRTLRVRFAPHNSAVR--------VKNLPPFVSNELLYRAFEIFG 189
+AERA ++ +M G+ +R+ ++ + +R +KNL + N+ LY F FG
Sbjct: 64 DAERALDTMNFEMLKGQPIRIMWSQRDPGLRKSGVGNIFIKNLEDSIDNKALYDTFSTFG 123
Query: 190 KIERAYVRVDERGKTLGEGVVEFARKPSALAAI 288
I V DE G + G G V F +A AI
Sbjct: 124 NILSCKVACDEHG-SRGFGFVHFETHEAAQQAI 155
Score = 29.9 bits (64), Expect = 7.5
Identities = 19/56 (33%), Positives = 25/56 (44%)
Frame = +1
Query: 121 VRVKNLPPFVSNELLYRAFEIFGKIERAYVRVDERGKTLGEGVVEFARKPSALAAI 288
+ VKNLP V + L F FGK+ V D G + G V F + A A+
Sbjct: 193 IYVKNLPVDVDEQGLQDLFSQFGKMLSVKVMRDNSGHSRCFGFVNFEKHEEAQKAV 248
>CR457134-1|CAG33415.1| 320|Homo sapiens EIF3S4 protein.
Length = 320
Score = 39.9 bits (89), Expect = 0.007
Identities = 26/78 (33%), Positives = 37/78 (47%), Gaps = 2/78 (2%)
Frame = +1
Query: 61 DGKMRNGRTLRV-RFAPHNSAVRVKNLPPFVSNELLYRAFEIFGKIERAYVRVDE-RGKT 234
DG R G +++ R A N+ +RV NL L F FG I R Y+ D+ G++
Sbjct: 220 DGASRRGESMQPNRRADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQS 279
Query: 235 LGEGVVEFARKPSALAAI 288
G + F R+ A AI
Sbjct: 280 KGFAFISFHRREDAARAI 297
>BT006889-1|AAP35535.1| 320|Homo sapiens eukaryotic translation
initiation factor 3, subunit 4 delta, 44kDa protein.
Length = 320
Score = 39.9 bits (89), Expect = 0.007
Identities = 26/78 (33%), Positives = 37/78 (47%), Gaps = 2/78 (2%)
Frame = +1
Query: 61 DGKMRNGRTLRV-RFAPHNSAVRVKNLPPFVSNELLYRAFEIFGKIERAYVRVDE-RGKT 234
DG R G +++ R A N+ +RV NL L F FG I R Y+ D+ G++
Sbjct: 220 DGASRRGESMQPNRRADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQS 279
Query: 235 LGEGVVEFARKPSALAAI 288
G + F R+ A AI
Sbjct: 280 KGFAFISFHRREDAARAI 297
>BC022543-1|AAH22543.1| 217|Homo sapiens zinc finger CCHC-type and
RNA binding motif 1 protein.
Length = 217
Score = 39.9 bits (89), Expect = 0.007
Identities = 25/72 (34%), Positives = 34/72 (47%), Gaps = 1/72 (1%)
Frame = +1
Query: 103 APHNSAVRVKNLPPFVSNELLYRAFEIFGKIERAYVRVD-ERGKTLGEGVVEFARKPSAL 279
AP S V V NLP ++N LYR F +GK+ + + D + K+ G + F K SA
Sbjct: 6 APSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQ 65
Query: 280 AAIRNCTEKCFF 315
R K F
Sbjct: 66 NCTRAINNKQLF 77
>BC010177-1|AAH10177.1| 140|Homo sapiens ZCRB1 protein protein.
Length = 140
Score = 39.9 bits (89), Expect = 0.007
Identities = 25/72 (34%), Positives = 34/72 (47%), Gaps = 1/72 (1%)
Frame = +1
Query: 103 APHNSAVRVKNLPPFVSNELLYRAFEIFGKIERAYVRVD-ERGKTLGEGVVEFARKPSAL 279
AP S V V NLP ++N LYR F +GK+ + + D + K+ G + F K SA
Sbjct: 6 APSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQ 65
Query: 280 AAIRNCTEKCFF 315
R K F
Sbjct: 66 NCTRAINNKQLF 77
>BC008469-1|AAH08469.1| 320|Homo sapiens eukaryotic translation
initiation factor 3, subunit 4 delta, 44kDa protein.
Length = 320
Score = 39.9 bits (89), Expect = 0.007
Identities = 26/78 (33%), Positives = 37/78 (47%), Gaps = 2/78 (2%)
Frame = +1
Query: 61 DGKMRNGRTLRV-RFAPHNSAVRVKNLPPFVSNELLYRAFEIFGKIERAYVRVDE-RGKT 234
DG R G +++ R A N+ +RV NL L F FG I R Y+ D+ G++
Sbjct: 220 DGASRRGESMQPNRRADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQS 279
Query: 235 LGEGVVEFARKPSALAAI 288
G + F R+ A AI
Sbjct: 280 KGFAFISFHRREDAARAI 297
>BC005099-1|AAH05099.1| 141|Homo sapiens Unknown (protein for
IMAGE:3609027) protein.
Length = 141
Score = 39.9 bits (89), Expect = 0.007
Identities = 25/72 (34%), Positives = 34/72 (47%), Gaps = 1/72 (1%)
Frame = +1
Query: 103 APHNSAVRVKNLPPFVSNELLYRAFEIFGKIERAYVRVD-ERGKTLGEGVVEFARKPSAL 279
AP S V V NLP ++N LYR F +GK+ + + D + K+ G + F K SA
Sbjct: 6 APSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQ 65
Query: 280 AAIRNCTEKCFF 315
R K F
Sbjct: 66 NCTRAINNKQLF 77
>BC000733-1|AAH00733.1| 320|Homo sapiens eukaryotic translation
initiation factor 3, subunit 4 delta, 44kDa protein.
Length = 320
Score = 39.9 bits (89), Expect = 0.007
Identities = 26/78 (33%), Positives = 37/78 (47%), Gaps = 2/78 (2%)
Frame = +1
Query: 61 DGKMRNGRTLRV-RFAPHNSAVRVKNLPPFVSNELLYRAFEIFGKIERAYVRVDE-RGKT 234
DG R G +++ R A N+ +RV NL L F FG I R Y+ D+ G++
Sbjct: 220 DGASRRGESMQPNRRADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQS 279
Query: 235 LGEGVVEFARKPSALAAI 288
G + F R+ A AI
Sbjct: 280 KGFAFISFHRREDAARAI 297
>AF094850-1|AAG15419.1| 320|Homo sapiens eukaryotic translation
initiation factor 3 subunit p42/p44 protein.
Length = 320
Score = 39.9 bits (89), Expect = 0.007
Identities = 26/78 (33%), Positives = 37/78 (47%), Gaps = 2/78 (2%)
Frame = +1
Query: 61 DGKMRNGRTLRV-RFAPHNSAVRVKNLPPFVSNELLYRAFEIFGKIERAYVRVDE-RGKT 234
DG R G +++ R A N+ +RV NL L F FG I R Y+ D+ G++
Sbjct: 220 DGASRRGESMQPNRRADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQS 279
Query: 235 LGEGVVEFARKPSALAAI 288
G + F R+ A AI
Sbjct: 280 KGFAFISFHRREDAARAI 297
>AF092453-1|AAG15396.1| 320|Homo sapiens eukaryotic translation
initiation factor 3 subunit p42/p44 protein.
Length = 320
Score = 39.9 bits (89), Expect = 0.007
Identities = 26/78 (33%), Positives = 37/78 (47%), Gaps = 2/78 (2%)
Frame = +1
Query: 61 DGKMRNGRTLRV-RFAPHNSAVRVKNLPPFVSNELLYRAFEIFGKIERAYVRVDE-RGKT 234
DG R G +++ R A N+ +RV NL L F FG I R Y+ D+ G++
Sbjct: 220 DGASRRGESMQPNRRADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQS 279
Query: 235 LGEGVVEFARKPSALAAI 288
G + F R+ A AI
Sbjct: 280 KGFAFISFHRREDAARAI 297
>AF020833-1|AAB71866.1| 320|Homo sapiens eukaryotic translation
initiation factor 3 subunit protein.
Length = 320
Score = 39.9 bits (89), Expect = 0.007
Identities = 26/78 (33%), Positives = 37/78 (47%), Gaps = 2/78 (2%)
Frame = +1
Query: 61 DGKMRNGRTLRV-RFAPHNSAVRVKNLPPFVSNELLYRAFEIFGKIERAYVRVDE-RGKT 234
DG R G +++ R A N+ +RV NL L F FG I R Y+ D+ G++
Sbjct: 220 DGASRRGESMQPNRRADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQS 279
Query: 235 LGEGVVEFARKPSALAAI 288
G + F R+ A AI
Sbjct: 280 KGFAFISFHRREDAARAI 297
>AB062361-1|BAB56132.1| 217|Homo sapiens ZCRB1 protein protein.
Length = 217
Score = 39.9 bits (89), Expect = 0.007
Identities = 25/72 (34%), Positives = 34/72 (47%), Gaps = 1/72 (1%)
Frame = +1
Query: 103 APHNSAVRVKNLPPFVSNELLYRAFEIFGKIERAYVRVD-ERGKTLGEGVVEFARKPSAL 279
AP S V V NLP ++N LYR F +GK+ + + D + K+ G + F K SA
Sbjct: 6 APSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQ 65
Query: 280 AAIRNCTEKCFF 315
R K F
Sbjct: 66 NCTRAINNKQLF 77
>Z48501-1|CAA88401.1| 522|Homo sapiens polyadenylate binding
protein II protein.
Length = 522
Score = 39.5 bits (88), Expect = 0.009
Identities = 35/120 (29%), Positives = 56/120 (46%), Gaps = 8/120 (6%)
Frame = +1
Query: 34 NAERAKRELDGKMRNGRTLRVRFAPHNSAVR--------VKNLPPFVSNELLYRAFEIFG 189
+AERA ++ + G+ +R+ ++ + ++R +KNL + N+ LY F FG
Sbjct: 39 DAERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFG 98
Query: 190 KIERAYVRVDERGKTLGEGVVEFARKPSALAAIRNCTEKCFFLTSSLRPVIVENFEEPDE 369
I V DE G + G G V F + +A AI EK + + R V V F+ E
Sbjct: 99 NILSCKVVCDENG-SKGYGFVHFETQEAAERAI----EKMNGMLLNDRKVFVGRFKSRKE 153
Score = 32.3 bits (70), Expect = 1.4
Identities = 20/56 (35%), Positives = 25/56 (44%)
Frame = +1
Query: 121 VRVKNLPPFVSNELLYRAFEIFGKIERAYVRVDERGKTLGEGVVEFARKPSALAAI 288
V +KN + +E L F FG V DE GK+ G G V F R A A+
Sbjct: 168 VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAV 223
>Y00345-1|CAA68428.1| 633|Homo sapiens protein ( Human mRNA for
polyA binding protein. ).
Length = 633
Score = 39.5 bits (88), Expect = 0.009
Identities = 35/120 (29%), Positives = 56/120 (46%), Gaps = 8/120 (6%)
Frame = +1
Query: 34 NAERAKRELDGKMRNGRTLRVRFAPHNSAVR--------VKNLPPFVSNELLYRAFEIFG 189
+AERA ++ + G+ +R+ ++ + ++R +KNL + N+ LY F FG
Sbjct: 64 DAERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFG 123
Query: 190 KIERAYVRVDERGKTLGEGVVEFARKPSALAAIRNCTEKCFFLTSSLRPVIVENFEEPDE 369
I V DE G + G G V F + +A AI EK + + R V V F+ E
Sbjct: 124 NILSCKVVCDENG-SKGYGFVHFETQEAAERAI----EKMNGMLLNDRKVFVGRFKSRKE 178
>U68104-1|AAD08718.1| 636|Homo sapiens poly(A)-binding protein
protein.
Length = 636
Score = 39.5 bits (88), Expect = 0.009
Identities = 35/120 (29%), Positives = 56/120 (46%), Gaps = 8/120 (6%)
Frame = +1
Query: 34 NAERAKRELDGKMRNGRTLRVRFAPHNSAVR--------VKNLPPFVSNELLYRAFEIFG 189
+AERA ++ + G+ +R+ ++ + ++R +KNL + N+ LY F FG
Sbjct: 64 DAERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFG 123
Query: 190 KIERAYVRVDERGKTLGEGVVEFARKPSALAAIRNCTEKCFFLTSSLRPVIVENFEEPDE 369
I V DE G + G G V F + +A AI EK + + R V V F+ E
Sbjct: 124 NILSCKVVCDENG-SKGYGFVHFETQEAAERAI----EKMNGMLLNDRKVFVGRFKSRKE 178
Score = 32.3 bits (70), Expect = 1.4
Identities = 20/56 (35%), Positives = 25/56 (44%)
Frame = +1
Query: 121 VRVKNLPPFVSNELLYRAFEIFGKIERAYVRVDERGKTLGEGVVEFARKPSALAAI 288
V +KN + +E L F FG V DE GK+ G G V F R A A+
Sbjct: 193 VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAV 248
>BC041863-1|AAH41863.1| 636|Homo sapiens poly(A) binding protein,
cytoplasmic 1 protein.
Length = 636
Score = 39.5 bits (88), Expect = 0.009
Identities = 35/120 (29%), Positives = 56/120 (46%), Gaps = 8/120 (6%)
Frame = +1
Query: 34 NAERAKRELDGKMRNGRTLRVRFAPHNSAVR--------VKNLPPFVSNELLYRAFEIFG 189
+AERA ++ + G+ +R+ ++ + ++R +KNL + N+ LY F FG
Sbjct: 64 DAERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFG 123
Query: 190 KIERAYVRVDERGKTLGEGVVEFARKPSALAAIRNCTEKCFFLTSSLRPVIVENFEEPDE 369
I V DE G + G G V F + +A AI EK + + R V V F+ E
Sbjct: 124 NILSCKVVCDENG-SKGYGFVHFETQEAAERAI----EKMNGMLLNDRKVFVGRFKSRKE 178
Score = 32.3 bits (70), Expect = 1.4
Identities = 20/56 (35%), Positives = 25/56 (44%)
Frame = +1
Query: 121 VRVKNLPPFVSNELLYRAFEIFGKIERAYVRVDERGKTLGEGVVEFARKPSALAAI 288
V +KN + +E L F FG V DE GK+ G G V F R A A+
Sbjct: 193 VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAV 248
>BC023520-1|AAH23520.1| 636|Homo sapiens poly(A) binding protein,
cytoplasmic 1 protein.
Length = 636
Score = 39.5 bits (88), Expect = 0.009
Identities = 35/120 (29%), Positives = 56/120 (46%), Gaps = 8/120 (6%)
Frame = +1
Query: 34 NAERAKRELDGKMRNGRTLRVRFAPHNSAVR--------VKNLPPFVSNELLYRAFEIFG 189
+AERA ++ + G+ +R+ ++ + ++R +KNL + N+ LY F FG
Sbjct: 64 DAERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFG 123
Query: 190 KIERAYVRVDERGKTLGEGVVEFARKPSALAAIRNCTEKCFFLTSSLRPVIVENFEEPDE 369
I V DE G + G G V F + +A AI EK + + R V V F+ E
Sbjct: 124 NILSCKVVCDENG-SKGYGFVHFETQEAAERAI----EKMNGMLLNDRKVFVGRFKSRKE 178
Score = 32.3 bits (70), Expect = 1.4
Identities = 20/56 (35%), Positives = 25/56 (44%)
Frame = +1
Query: 121 VRVKNLPPFVSNELLYRAFEIFGKIERAYVRVDERGKTLGEGVVEFARKPSALAAI 288
V +KN + +E L F FG V DE GK+ G G V F R A A+
Sbjct: 193 VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAV 248
>BC015958-1|AAH15958.1| 636|Homo sapiens PABPC1 protein protein.
Length = 636
Score = 39.5 bits (88), Expect = 0.009
Identities = 35/120 (29%), Positives = 56/120 (46%), Gaps = 8/120 (6%)
Frame = +1
Query: 34 NAERAKRELDGKMRNGRTLRVRFAPHNSAVR--------VKNLPPFVSNELLYRAFEIFG 189
+AERA ++ + G+ +R+ ++ + ++R +KNL + N+ LY F FG
Sbjct: 64 DAERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFG 123
Query: 190 KIERAYVRVDERGKTLGEGVVEFARKPSALAAIRNCTEKCFFLTSSLRPVIVENFEEPDE 369
I V DE G + G G V F + +A AI EK + + R V V F+ E
Sbjct: 124 NILSCKVVCDENG-SKGYGFVHFETQEAAERAI----EKMNGMLLNDRKVFVGRFKSRKE 178
Score = 32.3 bits (70), Expect = 1.4
Identities = 20/56 (35%), Positives = 25/56 (44%)
Frame = +1
Query: 121 VRVKNLPPFVSNELLYRAFEIFGKIERAYVRVDERGKTLGEGVVEFARKPSALAAI 288
V +KN + +E L F FG V DE GK+ G G V F R A A+
Sbjct: 193 VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAV 248
>U96074-1|AAC78728.1| 320|Homo sapiens translation initiation
factor eIF3 p44 subunit protein.
Length = 320
Score = 37.9 bits (84), Expect = 0.028
Identities = 25/78 (32%), Positives = 36/78 (46%), Gaps = 2/78 (2%)
Frame = +1
Query: 61 DGKMRNGRTLRV-RFAPHNSAVRVKNLPPFVSNELLYRAFEIFGKIERAYVRVDE-RGKT 234
DG R G +++ R A N+ +RV NL L F FG I R Y+ D+ G++
Sbjct: 220 DGASRRGESMQPNRRADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQS 279
Query: 235 LGEGVVEFARKPSALAAI 288
G + F R+ AI
Sbjct: 280 KGFAFISFHRREDRARAI 297
>BC065540-1|AAH65540.1| 631|Homo sapiens PABPC4 protein protein.
Length = 631
Score = 37.9 bits (84), Expect = 0.028
Identities = 34/120 (28%), Positives = 56/120 (46%), Gaps = 8/120 (6%)
Frame = +1
Query: 34 NAERAKRELDGKMRNGRTLRVRFAPHNSAVR--------VKNLPPFVSNELLYRAFEIFG 189
+AERA ++ + G+ +R+ ++ + ++R +KNL + N++LY F FG
Sbjct: 64 DAERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKVLYDTFSAFG 123
Query: 190 KIERAYVRVDERGKTLGEGVVEFARKPSALAAIRNCTEKCFFLTSSLRPVIVENFEEPDE 369
I V DE G + G V F + +A AI EK + + R V V F+ E
Sbjct: 124 NILSCKVVCDENG-SKGYAFVHFETQEAADKAI----EKMNGMLLNDRKVFVGRFKSRKE 178
Score = 32.3 bits (70), Expect = 1.4
Identities = 20/62 (32%), Positives = 26/62 (41%)
Frame = +1
Query: 121 VRVKNLPPFVSNELLYRAFEIFGKIERAYVRVDERGKTLGEGVVEFARKPSALAAIRNCT 300
V +KN V +E L F FGK V D GK+ G G V + + A A+
Sbjct: 193 VYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPNGKSKGFGFVSYEKHEDANKAVEEMN 252
Query: 301 EK 306
K
Sbjct: 253 GK 254
Score = 31.5 bits (68), Expect = 2.5
Identities = 18/54 (33%), Positives = 29/54 (53%)
Frame = +1
Query: 127 VKNLPPFVSNELLYRAFEIFGKIERAYVRVDERGKTLGEGVVEFARKPSALAAI 288
+KNL + +E L + F FG I A V +++ G++ G G V F+ A A+
Sbjct: 298 IKNLDDTIDDEKLRKEFSPFGSITSAKVMLED-GRSKGFGFVCFSSPEEATKAV 350
>U75686-1|AAB97309.1| 644|Homo sapiens polyadenylate binding
protein protein.
Length = 644
Score = 37.1 bits (82), Expect = 0.050
Identities = 34/120 (28%), Positives = 55/120 (45%), Gaps = 8/120 (6%)
Frame = +1
Query: 34 NAERAKRELDGKMRNGRTLRVRFAPHNSAVR--------VKNLPPFVSNELLYRAFEIFG 189
+AERA ++ + G+ +R+ ++ + ++R +KNL + N+ LY F FG
Sbjct: 64 DAERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFG 123
Query: 190 KIERAYVRVDERGKTLGEGVVEFARKPSALAAIRNCTEKCFFLTSSLRPVIVENFEEPDE 369
I V DE G + G V F + +A AI EK + + R V V F+ E
Sbjct: 124 NILSCKVVCDENG-SKGYAFVHFETQEAADKAI----EKMNGMLLNDRKVFVGRFKSRKE 178
Score = 32.3 bits (70), Expect = 1.4
Identities = 20/62 (32%), Positives = 26/62 (41%)
Frame = +1
Query: 121 VRVKNLPPFVSNELLYRAFEIFGKIERAYVRVDERGKTLGEGVVEFARKPSALAAIRNCT 300
V +KN V +E L F FGK V D GK+ G G V + + A A+
Sbjct: 193 VYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPNGKSKGFGFVSYEKHEDANKAVEEMN 252
Query: 301 EK 306
K
Sbjct: 253 GK 254
Score = 31.5 bits (68), Expect = 2.5
Identities = 18/54 (33%), Positives = 29/54 (53%)
Frame = +1
Query: 127 VKNLPPFVSNELLYRAFEIFGKIERAYVRVDERGKTLGEGVVEFARKPSALAAI 288
+KNL + +E L + F FG I A V +++ G++ G G V F+ A A+
Sbjct: 298 IKNLDDTIDDEKLRKEFSPFGSITSAKVMLED-GRSKGFGFVCFSSPEEATKAV 350
>U33818-1|AAC50350.1| 644|Homo sapiens inducible poly(A)-binding
protein protein.
Length = 644
Score = 37.1 bits (82), Expect = 0.050
Identities = 34/120 (28%), Positives = 55/120 (45%), Gaps = 8/120 (6%)
Frame = +1
Query: 34 NAERAKRELDGKMRNGRTLRVRFAPHNSAVR--------VKNLPPFVSNELLYRAFEIFG 189
+AERA ++ + G+ +R+ ++ + ++R +KNL + N+ LY F FG
Sbjct: 64 DAERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFG 123
Query: 190 KIERAYVRVDERGKTLGEGVVEFARKPSALAAIRNCTEKCFFLTSSLRPVIVENFEEPDE 369
I V DE G + G V F + +A AI EK + + R V V F+ E
Sbjct: 124 NILSCKVVCDENG-SKGYAFVHFETQEAADKAI----EKMNGMLLNDRKVFVGRFKSRKE 178
Score = 32.3 bits (70), Expect = 1.4
Identities = 20/62 (32%), Positives = 26/62 (41%)
Frame = +1
Query: 121 VRVKNLPPFVSNELLYRAFEIFGKIERAYVRVDERGKTLGEGVVEFARKPSALAAIRNCT 300
V +KN V +E L F FGK V D GK+ G G V + + A A+
Sbjct: 193 VYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPNGKSKGFGFVSYEKHEDANKAVEEMN 252
Query: 301 EK 306
K
Sbjct: 253 GK 254
Score = 31.5 bits (68), Expect = 2.5
Identities = 18/54 (33%), Positives = 29/54 (53%)
Frame = +1
Query: 127 VKNLPPFVSNELLYRAFEIFGKIERAYVRVDERGKTLGEGVVEFARKPSALAAI 288
+KNL + +E L + F FG I A V +++ G++ G G V F+ A A+
Sbjct: 298 IKNLDDTIDDEKLRKEFSPFGSITSAKVMLED-GRSKGFGFVCFSSPEEATKAV 350
>BC094755-1|AAH94755.1| 660|Homo sapiens PABPC4 protein protein.
Length = 660
Score = 37.1 bits (82), Expect = 0.050
Identities = 34/120 (28%), Positives = 55/120 (45%), Gaps = 8/120 (6%)
Frame = +1
Query: 34 NAERAKRELDGKMRNGRTLRVRFAPHNSAVR--------VKNLPPFVSNELLYRAFEIFG 189
+AERA ++ + G+ +R+ ++ + ++R +KNL + N+ LY F FG
Sbjct: 64 DAERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFG 123
Query: 190 KIERAYVRVDERGKTLGEGVVEFARKPSALAAIRNCTEKCFFLTSSLRPVIVENFEEPDE 369
I V DE G + G V F + +A AI EK + + R V V F+ E
Sbjct: 124 NILSCKVVCDENG-SKGYAFVHFETQEAADKAI----EKMNGMLLNDRKVFVGRFKSRKE 178
Score = 32.3 bits (70), Expect = 1.4
Identities = 20/62 (32%), Positives = 26/62 (41%)
Frame = +1
Query: 121 VRVKNLPPFVSNELLYRAFEIFGKIERAYVRVDERGKTLGEGVVEFARKPSALAAIRNCT 300
V +KN V +E L F FGK V D GK+ G G V + + A A+
Sbjct: 193 VYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPNGKSKGFGFVSYEKHEDANKAVEEMN 252
Query: 301 EK 306
K
Sbjct: 253 GK 254
Score = 31.5 bits (68), Expect = 2.5
Identities = 18/54 (33%), Positives = 29/54 (53%)
Frame = +1
Query: 127 VKNLPPFVSNELLYRAFEIFGKIERAYVRVDERGKTLGEGVVEFARKPSALAAI 288
+KNL + +E L + F FG I A V +++ G++ G G V F+ A A+
Sbjct: 298 IKNLDDTIDDEKLRKEFSPFGSITSAKVMLED-GRSKGFGFVCFSSPEEATKAV 350
>BC071591-1|AAH71591.1| 660|Homo sapiens PABPC4 protein protein.
Length = 660
Score = 37.1 bits (82), Expect = 0.050
Identities = 34/120 (28%), Positives = 55/120 (45%), Gaps = 8/120 (6%)
Frame = +1
Query: 34 NAERAKRELDGKMRNGRTLRVRFAPHNSAVR--------VKNLPPFVSNELLYRAFEIFG 189
+AERA ++ + G+ +R+ ++ + ++R +KNL + N+ LY F FG
Sbjct: 64 DAERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFG 123
Query: 190 KIERAYVRVDERGKTLGEGVVEFARKPSALAAIRNCTEKCFFLTSSLRPVIVENFEEPDE 369
I V DE G + G V F + +A AI EK + + R V V F+ E
Sbjct: 124 NILSCKVVCDENG-SKGYAFVHFETQEAADKAI----EKMNGMLLNDRKVFVGRFKSRKE 178
Score = 32.3 bits (70), Expect = 1.4
Identities = 20/62 (32%), Positives = 26/62 (41%)
Frame = +1
Query: 121 VRVKNLPPFVSNELLYRAFEIFGKIERAYVRVDERGKTLGEGVVEFARKPSALAAIRNCT 300
V +KN V +E L F FGK V D GK+ G G V + + A A+
Sbjct: 193 VYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPNGKSKGFGFVSYEKHEDANKAVEEMN 252
Query: 301 EK 306
K
Sbjct: 253 GK 254
Score = 31.5 bits (68), Expect = 2.5
Identities = 18/54 (33%), Positives = 29/54 (53%)
Frame = +1
Query: 127 VKNLPPFVSNELLYRAFEIFGKIERAYVRVDERGKTLGEGVVEFARKPSALAAI 288
+KNL + +E L + F FG I A V +++ G++ G G V F+ A A+
Sbjct: 298 IKNLDDTIDDEKLRKEFSPFGSITSAKVMLED-GRSKGFGFVCFSSPEEATKAV 350
>AL845289-3|CAI12300.1| 644|Homo sapiens poly(A) binding protein,
cytoplasmic 4 (inducibletaining 6 protein.
Length = 644
Score = 37.1 bits (82), Expect = 0.050
Identities = 34/120 (28%), Positives = 55/120 (45%), Gaps = 8/120 (6%)
Frame = +1
Query: 34 NAERAKRELDGKMRNGRTLRVRFAPHNSAVR--------VKNLPPFVSNELLYRAFEIFG 189
+AERA ++ + G+ +R+ ++ + ++R +KNL + N+ LY F FG
Sbjct: 64 DAERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFG 123
Query: 190 KIERAYVRVDERGKTLGEGVVEFARKPSALAAIRNCTEKCFFLTSSLRPVIVENFEEPDE 369
I V DE G + G V F + +A AI EK + + R V V F+ E
Sbjct: 124 NILSCKVVCDENG-SKGYAFVHFETQEAADKAI----EKMNGMLLNDRKVFVGRFKSRKE 178
Score = 32.3 bits (70), Expect = 1.4
Identities = 20/62 (32%), Positives = 26/62 (41%)
Frame = +1
Query: 121 VRVKNLPPFVSNELLYRAFEIFGKIERAYVRVDERGKTLGEGVVEFARKPSALAAIRNCT 300
V +KN V +E L F FGK V D GK+ G G V + + A A+
Sbjct: 193 VYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPNGKSKGFGFVSYEKHEDANKAVEEMN 252
Query: 301 EK 306
K
Sbjct: 253 GK 254
Score = 31.5 bits (68), Expect = 2.5
Identities = 18/54 (33%), Positives = 29/54 (53%)
Frame = +1
Query: 127 VKNLPPFVSNELLYRAFEIFGKIERAYVRVDERGKTLGEGVVEFARKPSALAAI 288
+KNL + +E L + F FG I A V +++ G++ G G V F+ A A+
Sbjct: 298 IKNLDDTIDDEKLRKEFSPFGSITSAKVMLED-GRSKGFGFVCFSSPEEATKAV 350
>AL845289-2|CAI12298.1| 660|Homo sapiens poly(A) binding protein,
cytoplasmic 4 (inducibleseudogene protein.
Length = 660
Score = 37.1 bits (82), Expect = 0.050
Identities = 34/120 (28%), Positives = 55/120 (45%), Gaps = 8/120 (6%)
Frame = +1
Query: 34 NAERAKRELDGKMRNGRTLRVRFAPHNSAVR--------VKNLPPFVSNELLYRAFEIFG 189
+AERA ++ + G+ +R+ ++ + ++R +KNL + N+ LY F FG
Sbjct: 64 DAERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFG 123
Query: 190 KIERAYVRVDERGKTLGEGVVEFARKPSALAAIRNCTEKCFFLTSSLRPVIVENFEEPDE 369
I V DE G + G V F + +A AI EK + + R V V F+ E
Sbjct: 124 NILSCKVVCDENG-SKGYAFVHFETQEAADKAI----EKMNGMLLNDRKVFVGRFKSRKE 178
Score = 32.3 bits (70), Expect = 1.4
Identities = 20/62 (32%), Positives = 26/62 (41%)
Frame = +1
Query: 121 VRVKNLPPFVSNELLYRAFEIFGKIERAYVRVDERGKTLGEGVVEFARKPSALAAIRNCT 300
V +KN V +E L F FGK V D GK+ G G V + + A A+
Sbjct: 193 VYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPNGKSKGFGFVSYEKHEDANKAVEEMN 252
Query: 301 EK 306
K
Sbjct: 253 GK 254
Score = 31.5 bits (68), Expect = 2.5
Identities = 18/54 (33%), Positives = 29/54 (53%)
Frame = +1
Query: 127 VKNLPPFVSNELLYRAFEIFGKIERAYVRVDERGKTLGEGVVEFARKPSALAAI 288
+KNL + +E L + F FG I A V +++ G++ G G V F+ A A+
Sbjct: 298 IKNLDDTIDDEKLRKEFSPFGSITSAKVMLED-GRSKGFGFVCFSSPEEATKAV 350
>AL845289-1|CAI12299.1| 615|Homo sapiens poly(A) binding protein,
cytoplasmic 4 (inducibleeudogene protein.
Length = 615
Score = 37.1 bits (82), Expect = 0.050
Identities = 34/120 (28%), Positives = 55/120 (45%), Gaps = 8/120 (6%)
Frame = +1
Query: 34 NAERAKRELDGKMRNGRTLRVRFAPHNSAVR--------VKNLPPFVSNELLYRAFEIFG 189
+AERA ++ + G+ +R+ ++ + ++R +KNL + N+ LY F FG
Sbjct: 64 DAERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFG 123
Query: 190 KIERAYVRVDERGKTLGEGVVEFARKPSALAAIRNCTEKCFFLTSSLRPVIVENFEEPDE 369
I V DE G + G V F + +A AI EK + + R V V F+ E
Sbjct: 124 NILSCKVVCDENG-SKGYAFVHFETQEAADKAI----EKMNGMLLNDRKVFVGRFKSRKE 178
Score = 32.3 bits (70), Expect = 1.4
Identities = 20/62 (32%), Positives = 26/62 (41%)
Frame = +1
Query: 121 VRVKNLPPFVSNELLYRAFEIFGKIERAYVRVDERGKTLGEGVVEFARKPSALAAIRNCT 300
V +KN V +E L F FGK V D GK+ G G V + + A A+
Sbjct: 193 VYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPNGKSKGFGFVSYEKHEDANKAVEEMN 252
Query: 301 EK 306
K
Sbjct: 253 GK 254
Score = 31.5 bits (68), Expect = 2.5
Identities = 18/54 (33%), Positives = 29/54 (53%)
Frame = +1
Query: 127 VKNLPPFVSNELLYRAFEIFGKIERAYVRVDERGKTLGEGVVEFARKPSALAAI 288
+KNL + +E L + F FG I A V +++ G++ G G V F+ A A+
Sbjct: 298 IKNLDDTIDDEKLRKEFSPFGSITSAKVMLED-GRSKGFGFVCFSSPEEATKAV 350
>AL365277-4|CAI16414.1| 644|Homo sapiens poly(A) binding protein,
cytoplasmic 4 (induciblepeptide, antigen CD29 includes
protein.
Length = 644
Score = 37.1 bits (82), Expect = 0.050
Identities = 34/120 (28%), Positives = 55/120 (45%), Gaps = 8/120 (6%)
Frame = +1
Query: 34 NAERAKRELDGKMRNGRTLRVRFAPHNSAVR--------VKNLPPFVSNELLYRAFEIFG 189
+AERA ++ + G+ +R+ ++ + ++R +KNL + N+ LY F FG
Sbjct: 64 DAERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFG 123
Query: 190 KIERAYVRVDERGKTLGEGVVEFARKPSALAAIRNCTEKCFFLTSSLRPVIVENFEEPDE 369
I V DE G + G V F + +A AI EK + + R V V F+ E
Sbjct: 124 NILSCKVVCDENG-SKGYAFVHFETQEAADKAI----EKMNGMLLNDRKVFVGRFKSRKE 178
Score = 32.3 bits (70), Expect = 1.4
Identities = 20/62 (32%), Positives = 26/62 (41%)
Frame = +1
Query: 121 VRVKNLPPFVSNELLYRAFEIFGKIERAYVRVDERGKTLGEGVVEFARKPSALAAIRNCT 300
V +KN V +E L F FGK V D GK+ G G V + + A A+
Sbjct: 193 VYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPNGKSKGFGFVSYEKHEDANKAVEEMN 252
Query: 301 EK 306
K
Sbjct: 253 GK 254
Score = 31.5 bits (68), Expect = 2.5
Identities = 18/54 (33%), Positives = 29/54 (53%)
Frame = +1
Query: 127 VKNLPPFVSNELLYRAFEIFGKIERAYVRVDERGKTLGEGVVEFARKPSALAAI 288
+KNL + +E L + F FG I A V +++ G++ G G V F+ A A+
Sbjct: 298 IKNLDDTIDDEKLRKEFSPFGSITSAKVMLED-GRSKGFGFVCFSSPEEATKAV 350
>AL365277-3|CAI16412.1| 660|Homo sapiens poly(A) binding protein,
cytoplasmic 4 (inducible) pseudogene protein.
Length = 660
Score = 37.1 bits (82), Expect = 0.050
Identities = 34/120 (28%), Positives = 55/120 (45%), Gaps = 8/120 (6%)
Frame = +1
Query: 34 NAERAKRELDGKMRNGRTLRVRFAPHNSAVR--------VKNLPPFVSNELLYRAFEIFG 189
+AERA ++ + G+ +R+ ++ + ++R +KNL + N+ LY F FG
Sbjct: 64 DAERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFG 123
Query: 190 KIERAYVRVDERGKTLGEGVVEFARKPSALAAIRNCTEKCFFLTSSLRPVIVENFEEPDE 369
I V DE G + G V F + +A AI EK + + R V V F+ E
Sbjct: 124 NILSCKVVCDENG-SKGYAFVHFETQEAADKAI----EKMNGMLLNDRKVFVGRFKSRKE 178
Score = 32.3 bits (70), Expect = 1.4
Identities = 20/62 (32%), Positives = 26/62 (41%)
Frame = +1
Query: 121 VRVKNLPPFVSNELLYRAFEIFGKIERAYVRVDERGKTLGEGVVEFARKPSALAAIRNCT 300
V +KN V +E L F FGK V D GK+ G G V + + A A+
Sbjct: 193 VYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPNGKSKGFGFVSYEKHEDANKAVEEMN 252
Query: 301 EK 306
K
Sbjct: 253 GK 254
Score = 31.5 bits (68), Expect = 2.5
Identities = 18/54 (33%), Positives = 29/54 (53%)
Frame = +1
Query: 127 VKNLPPFVSNELLYRAFEIFGKIERAYVRVDERGKTLGEGVVEFARKPSALAAI 288
+KNL + +E L + F FG I A V +++ G++ G G V F+ A A+
Sbjct: 298 IKNLDDTIDDEKLRKEFSPFGSITSAKVMLED-GRSKGFGFVCFSSPEEATKAV 350
>AL365277-2|CAI16413.1| 615|Homo sapiens poly(A) binding protein,
cytoplasmic 4 (induciblely, member 5 protein.
Length = 615
Score = 37.1 bits (82), Expect = 0.050
Identities = 34/120 (28%), Positives = 55/120 (45%), Gaps = 8/120 (6%)
Frame = +1
Query: 34 NAERAKRELDGKMRNGRTLRVRFAPHNSAVR--------VKNLPPFVSNELLYRAFEIFG 189
+AERA ++ + G+ +R+ ++ + ++R +KNL + N+ LY F FG
Sbjct: 64 DAERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFG 123
Query: 190 KIERAYVRVDERGKTLGEGVVEFARKPSALAAIRNCTEKCFFLTSSLRPVIVENFEEPDE 369
I V DE G + G V F + +A AI EK + + R V V F+ E
Sbjct: 124 NILSCKVVCDENG-SKGYAFVHFETQEAADKAI----EKMNGMLLNDRKVFVGRFKSRKE 178
Score = 32.3 bits (70), Expect = 1.4
Identities = 20/62 (32%), Positives = 26/62 (41%)
Frame = +1
Query: 121 VRVKNLPPFVSNELLYRAFEIFGKIERAYVRVDERGKTLGEGVVEFARKPSALAAIRNCT 300
V +KN V +E L F FGK V D GK+ G G V + + A A+
Sbjct: 193 VYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPNGKSKGFGFVSYEKHEDANKAVEEMN 252
Query: 301 EK 306
K
Sbjct: 253 GK 254
Score = 31.5 bits (68), Expect = 2.5
Identities = 18/54 (33%), Positives = 29/54 (53%)
Frame = +1
Query: 127 VKNLPPFVSNELLYRAFEIFGKIERAYVRVDERGKTLGEGVVEFARKPSALAAI 288
+KNL + +E L + F FG I A V +++ G++ G G V F+ A A+
Sbjct: 298 IKNLDDTIDDEKLRKEFSPFGSITSAKVMLED-GRSKGFGFVCFSSPEEATKAV 350
>L26405-1|AAA58677.1| 359|Homo sapiens huc protein.
Length = 359
Score = 36.3 bits (80), Expect = 0.087
Identities = 25/93 (26%), Positives = 51/93 (54%), Gaps = 7/93 (7%)
Frame = +1
Query: 34 NAERAKRELDGKMRNGRTLRVRFA-PHNSAVR-----VKNLPPFVSNELLYRAFEIFGKI 195
+A++A L+G +T++V +A P ++++R V LP +S + + + F +G+I
Sbjct: 92 DADKAINTLNGLKLQTKTIKVSYARPSSASIRDANLYVSGLPKTMSQKEMEQLFSQYGRI 151
Query: 196 ERAYVRVDE-RGKTLGEGVVEFARKPSALAAIR 291
+ + VD+ G + G G + F ++ A AI+
Sbjct: 152 ITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIK 184
>D26158-1|BAA21838.1| 350|Homo sapiens PLE21 protein protein.
Length = 350
Score = 36.3 bits (80), Expect = 0.087
Identities = 25/93 (26%), Positives = 51/93 (54%), Gaps = 7/93 (7%)
Frame = +1
Query: 34 NAERAKRELDGKMRNGRTLRVRFA-PHNSAVR-----VKNLPPFVSNELLYRAFEIFGKI 195
+A++A L+G +T++V +A P ++++R V LP +S + + + F +G+I
Sbjct: 83 DADKAINTLNGLKLQTKTIKVSYARPSSASIRDANLYVSGLPKTMSQKEMEQLFSQYGRI 142
Query: 196 ERAYVRVDE-RGKTLGEGVVEFARKPSALAAIR 291
+ + VD+ G + G G + F ++ A AI+
Sbjct: 143 ITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIK 175
>BC014144-1|AAH14144.1| 367|Homo sapiens ELAVL3 protein protein.
Length = 367
Score = 36.3 bits (80), Expect = 0.087
Identities = 25/93 (26%), Positives = 51/93 (54%), Gaps = 7/93 (7%)
Frame = +1
Query: 34 NAERAKRELDGKMRNGRTLRVRFA-PHNSAVR-----VKNLPPFVSNELLYRAFEIFGKI 195
+A++A L+G +T++V +A P ++++R V LP +S + + + F +G+I
Sbjct: 92 DADKAINTLNGLKLQTKTIKVSYARPSSASIRDANLYVSGLPKTMSQKEMEQLFSQYGRI 151
Query: 196 ERAYVRVDE-RGKTLGEGVVEFARKPSALAAIR 291
+ + VD+ G + G G + F ++ A AI+
Sbjct: 152 ITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIK 184
>AY036909-1|AAK67714.1| 360|Homo sapiens HUC protein.
Length = 360
Score = 36.3 bits (80), Expect = 0.087
Identities = 25/93 (26%), Positives = 51/93 (54%), Gaps = 7/93 (7%)
Frame = +1
Query: 34 NAERAKRELDGKMRNGRTLRVRFA-PHNSAVR-----VKNLPPFVSNELLYRAFEIFGKI 195
+A++A L+G +T++V +A P ++++R V LP +S + + + F +G+I
Sbjct: 92 DADKAINTLNGLKLQTKTIKVSYARPSSASIRDANLYVSGLPKTMSQKEMEQLFSQYGRI 151
Query: 196 ERAYVRVDE-RGKTLGEGVVEFARKPSALAAIR 291
+ + VD+ G + G G + F ++ A AI+
Sbjct: 152 ITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIK 184
>AY034002-1|AAK57545.1| 318|Homo sapiens Hu antigen C long protein.
Length = 318
Score = 36.3 bits (80), Expect = 0.087
Identities = 25/93 (26%), Positives = 51/93 (54%), Gaps = 7/93 (7%)
Frame = +1
Query: 34 NAERAKRELDGKMRNGRTLRVRFA-PHNSAVR-----VKNLPPFVSNELLYRAFEIFGKI 195
+A++A L+G +T++V +A P ++++R V LP +S + + + F +G+I
Sbjct: 43 DADKAINTLNGLKLQTKTIKVSYARPSSASIRDANLYVSGLPKTMSQKEMEQLFSQYGRI 102
Query: 196 ERAYVRVDE-RGKTLGEGVVEFARKPSALAAIR 291
+ + VD+ G + G G + F ++ A AI+
Sbjct: 103 ITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIK 135
>BC063113-1|AAH63113.1| 382|Homo sapiens poly(A) binding protein,
cytoplasmic 5 protein.
Length = 382
Score = 35.5 bits (78), Expect = 0.15
Identities = 23/67 (34%), Positives = 34/67 (50%)
Frame = +1
Query: 88 LRVRFAPHNSAVRVKNLPPFVSNELLYRAFEIFGKIERAYVRVDERGKTLGEGVVEFARK 267
L+ + P + +KNL +++E L F FG I RA V + E G+ G GVV F+
Sbjct: 293 LKEKSRPPGVPIYIKNLDETINDEKLKEEFSSFGSISRAKVMM-EVGQGKGFGVVCFSSF 351
Query: 268 PSALAAI 288
A A+
Sbjct: 352 EEATKAV 358
Score = 31.1 bits (67), Expect = 3.3
Identities = 31/123 (25%), Positives = 52/123 (42%), Gaps = 8/123 (6%)
Frame = +1
Query: 25 YRVNAERAKRELDGKMRNGRTLRVRFAPHNSAVR--------VKNLPPFVSNELLYRAFE 180
+ +AE A ++ + NG+ R+ ++ + +R +KNL + N L+ F
Sbjct: 68 FPADAEWALNTMNFDLINGKPFRLMWSQPDDRLRKSGVGNIFIKNLDKSIDNRALFYLFS 127
Query: 181 IFGKIERAYVRVDERGKTLGEGVVEFARKPSALAAIRNCTEKCFFLTSSLRPVIVENFEE 360
FG I V D+ G + G V F +LAA + + R V V F+
Sbjct: 128 AFGNILSCKVVCDDNG-SKGYAYVHF----DSLAAANRAIWHMNGVRLNNRQVYVGRFKF 182
Query: 361 PDE 369
P+E
Sbjct: 183 PEE 185
>AY547318-1|AAS55633.1| 236|Homo sapiens unknown protein.
Length = 236
Score = 35.5 bits (78), Expect = 0.15
Identities = 21/57 (36%), Positives = 32/57 (56%), Gaps = 1/57 (1%)
Frame = +1
Query: 127 VKNLPPFVSNELLYRAFEIFGKIERAYVRVD-ERGKTLGEGVVEFARKPSALAAIRN 294
V LP ++ L + FE+FG+IE A V D + GK+ G G V A + +A A ++
Sbjct: 15 VGGLPYHTTDASLRKYFEVFGEIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKD 71
>AL662874-3|CAI41476.1| 218|Homo sapiens poly(A) binding protein,
cytoplasmic 5 protein.
Length = 218
Score = 35.5 bits (78), Expect = 0.15
Identities = 23/67 (34%), Positives = 34/67 (50%)
Frame = +1
Query: 88 LRVRFAPHNSAVRVKNLPPFVSNELLYRAFEIFGKIERAYVRVDERGKTLGEGVVEFARK 267
L+ + P + +KNL +++E L F FG I RA V + E G+ G GVV F+
Sbjct: 129 LKEKSRPPGVPIYIKNLDETINDEKLKEEFSSFGSISRAKVMM-EVGQGKGFGVVCFSSF 187
Query: 268 PSALAAI 288
A A+
Sbjct: 188 EEATKAV 194
>AL662874-2|CAI41475.1| 382|Homo sapiens poly(A) binding protein,
cytoplasmic 5 protein.
Length = 382
Score = 35.5 bits (78), Expect = 0.15
Identities = 23/67 (34%), Positives = 34/67 (50%)
Frame = +1
Query: 88 LRVRFAPHNSAVRVKNLPPFVSNELLYRAFEIFGKIERAYVRVDERGKTLGEGVVEFARK 267
L+ + P + +KNL +++E L F FG I RA V + E G+ G GVV F+
Sbjct: 293 LKEKSRPPGVPIYIKNLDETINDEKLKEEFSSFGSISRAKVMM-EVGQGKGFGVVCFSSF 351
Query: 268 PSALAAI 288
A A+
Sbjct: 352 EEATKAV 358
Score = 31.1 bits (67), Expect = 3.3
Identities = 31/123 (25%), Positives = 52/123 (42%), Gaps = 8/123 (6%)
Frame = +1
Query: 25 YRVNAERAKRELDGKMRNGRTLRVRFAPHNSAVR--------VKNLPPFVSNELLYRAFE 180
+ +AE A ++ + NG+ R+ ++ + +R +KNL + N L+ F
Sbjct: 68 FPADAEWALNTMNFDLINGKPFRLMWSQPDDRLRKSGVGNIFIKNLDKSIDNRALFYLFS 127
Query: 181 IFGKIERAYVRVDERGKTLGEGVVEFARKPSALAAIRNCTEKCFFLTSSLRPVIVENFEE 360
FG I V D+ G + G V F +LAA + + R V V F+
Sbjct: 128 AFGNILSCKVVCDDNG-SKGYAYVHF----DSLAAANRAIWHMNGVRLNNRQVYVGRFKF 182
Query: 361 PDE 369
P+E
Sbjct: 183 PEE 185
>AL136305-1|CAC36889.1| 236|Homo sapiens protein ( Human DNA
sequence from clone RP1-259A10 on chromosome 6p22.1-23
Contains the gene for an ssDNA binding protein and a CpG
island. ).
Length = 236
Score = 35.5 bits (78), Expect = 0.15
Identities = 21/57 (36%), Positives = 32/57 (56%), Gaps = 1/57 (1%)
Frame = +1
Query: 127 VKNLPPFVSNELLYRAFEIFGKIERAYVRVD-ERGKTLGEGVVEFARKPSALAAIRN 294
V LP ++ L + FE+FG+IE A V D + GK+ G G V A + +A A ++
Sbjct: 15 VGGLPYHTTDASLRKYFEVFGEIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKD 71
>AL122118-1|CAB59276.1| 367|Homo sapiens hypothetical protein
protein.
Length = 367
Score = 35.5 bits (78), Expect = 0.15
Identities = 23/67 (34%), Positives = 34/67 (50%)
Frame = +1
Query: 88 LRVRFAPHNSAVRVKNLPPFVSNELLYRAFEIFGKIERAYVRVDERGKTLGEGVVEFARK 267
L+ + P + +KNL +++E L F FG I RA V + E G+ G GVV F+
Sbjct: 278 LKEKSRPPGVPIYIKNLDETINDEKLKEEFSSFGSISRAKVMM-EVGQGKGFGVVCFSSF 336
Query: 268 PSALAAI 288
A A+
Sbjct: 337 EEATKAV 343
Score = 31.1 bits (67), Expect = 3.3
Identities = 31/123 (25%), Positives = 52/123 (42%), Gaps = 8/123 (6%)
Frame = +1
Query: 25 YRVNAERAKRELDGKMRNGRTLRVRFAPHNSAVR--------VKNLPPFVSNELLYRAFE 180
+ +AE A ++ + NG+ R+ ++ + +R +KNL + N L+ F
Sbjct: 53 FPADAEWALNTMNFDLINGKPFRLMWSQPDDRLRKSGVGNIFIKNLDKSIDNRALFYLFS 112
Query: 181 IFGKIERAYVRVDERGKTLGEGVVEFARKPSALAAIRNCTEKCFFLTSSLRPVIVENFEE 360
FG I V D+ G + G V F +LAA + + R V V F+
Sbjct: 113 AFGNILSCKVVCDDNG-SKGYAYVHF----DSLAAANRAIWHMNGVRLNNRQVYVGRFKF 167
Query: 361 PDE 369
P+E
Sbjct: 168 PEE 170
>AK095016-1|BAC04474.1| 211|Homo sapiens protein ( Homo sapiens
cDNA FLJ37697 fis, clone BRHIP2015360, highly similar to
Xenopus laevis RRM-containing protein SEB-4 mRNA. ).
Length = 211
Score = 35.5 bits (78), Expect = 0.15
Identities = 21/57 (36%), Positives = 32/57 (56%), Gaps = 1/57 (1%)
Frame = +1
Query: 127 VKNLPPFVSNELLYRAFEIFGKIERAYVRVD-ERGKTLGEGVVEFARKPSALAAIRN 294
V LP ++ L + FE+FG+IE A V D + GK+ G G V A + +A A ++
Sbjct: 15 VGGLPYHTTDASLRKYFEVFGEIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKD 71
>AJ278963-1|CAC42826.1| 382|Homo sapiens Poly(A)-binding protein
cytoplasmic 5 protein.
Length = 382
Score = 35.5 bits (78), Expect = 0.15
Identities = 23/67 (34%), Positives = 34/67 (50%)
Frame = +1
Query: 88 LRVRFAPHNSAVRVKNLPPFVSNELLYRAFEIFGKIERAYVRVDERGKTLGEGVVEFARK 267
L+ + P + +KNL +++E L F FG I RA V + E G+ G GVV F+
Sbjct: 293 LKEKSRPPGVPIYIKNLDETINDEKLKEEFSSFGSISRAKVMM-EVGQGKGFGVVCFSSF 351
Query: 268 PSALAAI 288
A A+
Sbjct: 352 EEATKAV 358
Score = 31.1 bits (67), Expect = 3.3
Identities = 31/123 (25%), Positives = 52/123 (42%), Gaps = 8/123 (6%)
Frame = +1
Query: 25 YRVNAERAKRELDGKMRNGRTLRVRFAPHNSAVR--------VKNLPPFVSNELLYRAFE 180
+ +AE A ++ + NG+ R+ ++ + +R +KNL + N L+ F
Sbjct: 68 FPADAEWALNTMNFDLINGKPFRLMWSQPDDRLRKSGVGNIFIKNLDKSIDNRALFYLFS 127
Query: 181 IFGKIERAYVRVDERGKTLGEGVVEFARKPSALAAIRNCTEKCFFLTSSLRPVIVENFEE 360
FG I V D+ G + G V F +LAA + + R V V F+
Sbjct: 128 AFGNILSCKVVCDDNG-SKGYAYVHF----DSLAAANRAIWHMNGVRLNNRQVYVGRFKF 182
Query: 361 PDE 369
P+E
Sbjct: 183 PEE 185
>DQ120640-1|ABB92425.1| 630|Homo sapiens PABP3 protein.
Length = 630
Score = 35.1 bits (77), Expect = 0.20
Identities = 27/94 (28%), Positives = 45/94 (47%), Gaps = 8/94 (8%)
Frame = +1
Query: 34 NAERAKRELDGKMRNGRTLRVRFAPHNSAVR--------VKNLPPFVSNELLYRAFEIFG 189
+AE A ++ + G+ +R+ ++ + ++R VKNL ++N+ LY FG
Sbjct: 64 DAEHALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFVKNLDKSINNKALYDTVSAFG 123
Query: 190 KIERAYVRVDERGKTLGEGVVEFARKPSALAAIR 291
I V DE G + G G V F +A AI+
Sbjct: 124 NILSCNVVCDENG-SKGYGFVHFETHEAAERAIK 156
Score = 33.1 bits (72), Expect = 0.81
Identities = 30/98 (30%), Positives = 42/98 (42%), Gaps = 14/98 (14%)
Frame = +1
Query: 37 AERAKRELDGKMRNGRTLRV-RFAPHNSA-------------VRVKNLPPFVSNELLYRA 174
AERA ++++G + NGR + V +F V +KN + +E L
Sbjct: 151 AERAIKKMNGMLLNGRKVFVGQFKSRKEREAELGARAKEFPNVYIKNFGEDMDDERLKDL 210
Query: 175 FEIFGKIERAYVRVDERGKTLGEGVVEFARKPSALAAI 288
F FG V DE GK+ G G V F R A A+
Sbjct: 211 FGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAV 248
Score = 32.7 bits (71), Expect(2) = 0.24
Identities = 21/54 (38%), Positives = 29/54 (53%)
Frame = +1
Query: 127 VKNLPPFVSNELLYRAFEIFGKIERAYVRVDERGKTLGEGVVEFARKPSALAAI 288
VKNL + +E L +AF FG I A V + E G++ G G V F+ A A+
Sbjct: 298 VKNLDDGIDDERLRKAFSPFGTITSAKVMM-EGGRSKGFGFVCFSSPEEATKAV 350
Score = 21.0 bits (42), Expect(2) = 0.24
Identities = 10/30 (33%), Positives = 18/30 (60%)
Frame = +1
Query: 7 GDYSQDYRVNAERAKRELDGKMRNGRTLRV 96
G S + +A++A E++GK NG+ + V
Sbjct: 234 GFVSFERHEDAQKAVDEMNGKELNGKQIYV 263
>BC045608-1|AAH45608.1| 631|Homo sapiens poly(A) binding protein,
cytoplasmic 3 protein.
Length = 631
Score = 35.1 bits (77), Expect = 0.20
Identities = 27/94 (28%), Positives = 45/94 (47%), Gaps = 8/94 (8%)
Frame = +1
Query: 34 NAERAKRELDGKMRNGRTLRVRFAPHNSAVR--------VKNLPPFVSNELLYRAFEIFG 189
+AE A ++ + G+ +R+ ++ + ++R VKNL ++N+ LY FG
Sbjct: 64 DAEHALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFVKNLDKSINNKALYDTVSAFG 123
Query: 190 KIERAYVRVDERGKTLGEGVVEFARKPSALAAIR 291
I V DE G + G G V F +A AI+
Sbjct: 124 NILSCNVVCDENG-SKGYGFVHFETHEAAERAIK 156
Score = 33.1 bits (72), Expect = 0.81
Identities = 30/98 (30%), Positives = 42/98 (42%), Gaps = 14/98 (14%)
Frame = +1
Query: 37 AERAKRELDGKMRNGRTLRV-RFAPHNSA-------------VRVKNLPPFVSNELLYRA 174
AERA ++++G + NGR + V +F V +KN + +E L
Sbjct: 151 AERAIKKMNGMLLNGRKVFVGQFKSRKEREAELGARAKEFPNVYIKNFGEDMDDERLKDL 210
Query: 175 FEIFGKIERAYVRVDERGKTLGEGVVEFARKPSALAAI 288
F FG V DE GK+ G G V F R A A+
Sbjct: 211 FGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAV 248
Score = 32.7 bits (71), Expect(2) = 0.24
Identities = 21/54 (38%), Positives = 29/54 (53%)
Frame = +1
Query: 127 VKNLPPFVSNELLYRAFEIFGKIERAYVRVDERGKTLGEGVVEFARKPSALAAI 288
VKNL + +E L +AF FG I A V + E G++ G G V F+ A A+
Sbjct: 298 VKNLDDGIDDERLRKAFSPFGTITSAKVMM-EGGRSKGFGFVCFSSPEEATKAV 350
Score = 21.0 bits (42), Expect(2) = 0.24
Identities = 10/30 (33%), Positives = 18/30 (60%)
Frame = +1
Query: 7 GDYSQDYRVNAERAKRELDGKMRNGRTLRV 96
G S + +A++A E++GK NG+ + V
Sbjct: 234 GFVSFERHEDAQKAVDEMNGKELNGKQIYV 263
>BC027617-1|AAH27617.1| 631|Homo sapiens poly(A) binding protein,
cytoplasmic 3 protein.
Length = 631
Score = 35.1 bits (77), Expect = 0.20
Identities = 27/94 (28%), Positives = 45/94 (47%), Gaps = 8/94 (8%)
Frame = +1
Query: 34 NAERAKRELDGKMRNGRTLRVRFAPHNSAVR--------VKNLPPFVSNELLYRAFEIFG 189
+AE A ++ + G+ +R+ ++ + ++R VKNL ++N+ LY FG
Sbjct: 64 DAEHALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFVKNLDKSINNKALYDTVSAFG 123
Query: 190 KIERAYVRVDERGKTLGEGVVEFARKPSALAAIR 291
I V DE G + G G V F +A AI+
Sbjct: 124 NILSCNVVCDENG-SKGYGFVHFETHEAAERAIK 156
Score = 33.1 bits (72), Expect = 0.81
Identities = 30/98 (30%), Positives = 42/98 (42%), Gaps = 14/98 (14%)
Frame = +1
Query: 37 AERAKRELDGKMRNGRTLRV-RFAPHNSA-------------VRVKNLPPFVSNELLYRA 174
AERA ++++G + NGR + V +F V +KN + +E L
Sbjct: 151 AERAIKKMNGMLLNGRKVFVGQFKSRKEREAELGARAKEFPNVYIKNFGEDMDDERLKDL 210
Query: 175 FEIFGKIERAYVRVDERGKTLGEGVVEFARKPSALAAI 288
F FG V DE GK+ G G V F R A A+
Sbjct: 211 FGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAV 248
Score = 32.7 bits (71), Expect(2) = 0.24
Identities = 21/54 (38%), Positives = 29/54 (53%)
Frame = +1
Query: 127 VKNLPPFVSNELLYRAFEIFGKIERAYVRVDERGKTLGEGVVEFARKPSALAAI 288
VKNL + +E L +AF FG I A V + E G++ G G V F+ A A+
Sbjct: 298 VKNLDDGIDDERLRKAFSPFGTITSAKVMM-EGGRSKGFGFVCFSSPEEATKAV 350
Score = 21.0 bits (42), Expect(2) = 0.24
Identities = 10/30 (33%), Positives = 18/30 (60%)
Frame = +1
Query: 7 GDYSQDYRVNAERAKRELDGKMRNGRTLRV 96
G S + +A++A E++GK NG+ + V
Sbjct: 234 GFVSFERHEDAQKAVDEMNGKELNGKQIYV 263
>AL359757-1|CAH70805.1| 631|Homo sapiens poly(A) binding protein,
cytoplasmic 3 protein.
Length = 631
Score = 35.1 bits (77), Expect = 0.20
Identities = 27/94 (28%), Positives = 45/94 (47%), Gaps = 8/94 (8%)
Frame = +1
Query: 34 NAERAKRELDGKMRNGRTLRVRFAPHNSAVR--------VKNLPPFVSNELLYRAFEIFG 189
+AE A ++ + G+ +R+ ++ + ++R VKNL ++N+ LY FG
Sbjct: 64 DAEHALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFVKNLDKSINNKALYDTVSAFG 123
Query: 190 KIERAYVRVDERGKTLGEGVVEFARKPSALAAIR 291
I V DE G + G G V F +A AI+
Sbjct: 124 NILSCNVVCDENG-SKGYGFVHFETHEAAERAIK 156
Score = 33.1 bits (72), Expect = 0.81
Identities = 30/98 (30%), Positives = 42/98 (42%), Gaps = 14/98 (14%)
Frame = +1
Query: 37 AERAKRELDGKMRNGRTLRV-RFAPHNSA-------------VRVKNLPPFVSNELLYRA 174
AERA ++++G + NGR + V +F V +KN + +E L
Sbjct: 151 AERAIKKMNGMLLNGRKVFVGQFKSRKEREAELGARAKEFPNVYIKNFGEDMDDERLKDL 210
Query: 175 FEIFGKIERAYVRVDERGKTLGEGVVEFARKPSALAAI 288
F FG V DE GK+ G G V F R A A+
Sbjct: 211 FGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAV 248
Score = 32.7 bits (71), Expect(2) = 0.24
Identities = 21/54 (38%), Positives = 29/54 (53%)
Frame = +1
Query: 127 VKNLPPFVSNELLYRAFEIFGKIERAYVRVDERGKTLGEGVVEFARKPSALAAI 288
VKNL + +E L +AF FG I A V + E G++ G G V F+ A A+
Sbjct: 298 VKNLDDGIDDERLRKAFSPFGTITSAKVMM-EGGRSKGFGFVCFSSPEEATKAV 350
Score = 21.0 bits (42), Expect(2) = 0.24
Identities = 10/30 (33%), Positives = 18/30 (60%)
Frame = +1
Query: 7 GDYSQDYRVNAERAKRELDGKMRNGRTLRV 96
G S + +A++A E++GK NG+ + V
Sbjct: 234 GFVSFERHEDAQKAVDEMNGKELNGKQIYV 263
>AF132026-1|AAG38953.1| 631|Homo sapiens testis-specific
poly(A)-binding protein protein.
Length = 631
Score = 35.1 bits (77), Expect = 0.20
Identities = 27/94 (28%), Positives = 45/94 (47%), Gaps = 8/94 (8%)
Frame = +1
Query: 34 NAERAKRELDGKMRNGRTLRVRFAPHNSAVR--------VKNLPPFVSNELLYRAFEIFG 189
+AE A ++ + G+ +R+ ++ + ++R VKNL ++N+ LY FG
Sbjct: 64 DAEHALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFVKNLDKSINNKALYDTVSAFG 123
Query: 190 KIERAYVRVDERGKTLGEGVVEFARKPSALAAIR 291
I V DE G + G G V F +A AI+
Sbjct: 124 NILSCNVVCDENG-SKGYGFVHFETHEAAERAIK 156
Score = 33.1 bits (72), Expect = 0.81
Identities = 30/98 (30%), Positives = 42/98 (42%), Gaps = 14/98 (14%)
Frame = +1
Query: 37 AERAKRELDGKMRNGRTLRV-RFAPHNSA-------------VRVKNLPPFVSNELLYRA 174
AERA ++++G + NGR + V +F V +KN + +E L
Sbjct: 151 AERAIKKMNGMLLNGRKVFVGQFKSRKEREAELGARAKEFPNVYIKNFGEDMDDERLKDL 210
Query: 175 FEIFGKIERAYVRVDERGKTLGEGVVEFARKPSALAAI 288
F FG V DE GK+ G G V F R A A+
Sbjct: 211 FGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAV 248
Score = 32.7 bits (71), Expect(2) = 0.24
Identities = 21/54 (38%), Positives = 29/54 (53%)
Frame = +1
Query: 127 VKNLPPFVSNELLYRAFEIFGKIERAYVRVDERGKTLGEGVVEFARKPSALAAI 288
VKNL + +E L +AF FG I A V + E G++ G G V F+ A A+
Sbjct: 298 VKNLDDGIDDERLRKAFSPFGTITSAKVMM-EGGRSKGFGFVCFSSPEEATKAV 350
Score = 21.0 bits (42), Expect(2) = 0.24
Identities = 10/30 (33%), Positives = 18/30 (60%)
Frame = +1
Query: 7 GDYSQDYRVNAERAKRELDGKMRNGRTLRV 96
G S + +A++A E++GK NG+ + V
Sbjct: 234 GFVSFERHEDAQKAVDEMNGKELNGKQIYV 263
>AB046799-1|BAB13405.1| 704|Homo sapiens KIAA1579 protein protein.
Length = 704
Score = 34.3 bits (75), Expect = 0.35
Identities = 20/70 (28%), Positives = 35/70 (50%), Gaps = 1/70 (1%)
Frame = +1
Query: 79 GRTLRVRFAPHNSAVRVKNLPPFVSNELLYRAFEIFGKIERAYVRVDE-RGKTLGEGVVE 255
G+ L V+ P ++ + + N+P ++E +G IER ++ E G + G G VE
Sbjct: 156 GKDLIVQLQPTDALLCITNVPISFTSEEFEELVRAYGNIERCFLVYSEVTGHSKGYGFVE 215
Query: 256 FARKPSALAA 285
+ +K A A
Sbjct: 216 YMKKDFAAKA 225
>AY034482-1|AAK59704.1| 588|Homo sapiens hnRNP Q2 protein.
Length = 588
Score = 33.5 bits (73), Expect = 0.61
Identities = 23/67 (34%), Positives = 34/67 (50%), Gaps = 12/67 (17%)
Frame = +1
Query: 61 DGKMRNGRTLRVRFAPHNSAVRVK-----NLPPFVSNELLYRAFEIFGKIER-------A 204
D K +N + + H +A +VK NL V+ E+L +AF FGK+ER A
Sbjct: 280 DDKKKNRSFCFLEYEDHKTAAQVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKLKDYA 339
Query: 205 YVRVDER 225
++ DER
Sbjct: 340 FIHFDER 346
>BC032643-1|AAH32643.1| 527|Homo sapiens SYNCRIP protein protein.
Length = 527
Score = 33.1 bits (72), Expect = 0.81
Identities = 23/67 (34%), Positives = 34/67 (50%), Gaps = 12/67 (17%)
Frame = +1
Query: 61 DGKMRNGRTLRVRFAPHNSAVRVK-----NLPPFVSNELLYRAFEIFGKIER-------A 204
D K +N + + H +A +VK NL V+ E+L +AF FGK+ER A
Sbjct: 280 DDKKKNRGFCFLEYEDHKTAAQVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKLKDYA 339
Query: 205 YVRVDER 225
++ DER
Sbjct: 340 FIHFDER 346
>D12799-1|BAA02244.1| 193|Homo sapiens polyadenylate binding
protein II protein.
Length = 193
Score = 32.3 bits (70), Expect = 1.4
Identities = 20/62 (32%), Positives = 26/62 (41%)
Frame = +1
Query: 121 VRVKNLPPFVSNELLYRAFEIFGKIERAYVRVDERGKTLGEGVVEFARKPSALAAIRNCT 300
V +KN V +E L F FGK V D GK+ G G V + + A A+
Sbjct: 4 VYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPNGKSKGFGFVSYEKHEDANKAVEEMN 63
Query: 301 EK 306
K
Sbjct: 64 GK 65
Score = 31.5 bits (68), Expect = 2.5
Identities = 18/54 (33%), Positives = 29/54 (53%)
Frame = +1
Query: 127 VKNLPPFVSNELLYRAFEIFGKIERAYVRVDERGKTLGEGVVEFARKPSALAAI 288
+KNL + +E L + F FG I A V +++ G++ G G V F+ A A+
Sbjct: 109 IKNLDDTIDDEKLRKEFSPFGSITSAKVMLED-GRSKGFGFVCFSSPEEATKAV 161
>BC132973-1|AAI32974.1| 1023|Homo sapiens peroxisome
proliferator-activated receptor gamma, coactivator 1 beta
protein.
Length = 1023
Score = 32.3 bits (70), Expect = 1.4
Identities = 19/58 (32%), Positives = 30/58 (51%), Gaps = 1/58 (1%)
Frame = +1
Query: 70 MRNGRTLRVRFAPHNSAVRVKNLPPFVSNELLYRAFEIFGKIERAYVRV-DERGKTLG 240
+R+ R R + V ++NL +S+ L R FE+FG+IE V + RG+ G
Sbjct: 887 IRHARKRREKAIGEGRVVYIQNLSSDMSSRELKRRFEVFGEIEECEVLTRNRRGEKYG 944
>BC132971-1|AAI32972.1| 1023|Homo sapiens peroxisome
proliferator-activated receptor gamma, coactivator 1 beta
protein.
Length = 1023
Score = 32.3 bits (70), Expect = 1.4
Identities = 19/58 (32%), Positives = 30/58 (51%), Gaps = 1/58 (1%)
Frame = +1
Query: 70 MRNGRTLRVRFAPHNSAVRVKNLPPFVSNELLYRAFEIFGKIERAYVRV-DERGKTLG 240
+R+ R R + V ++NL +S+ L R FE+FG+IE V + RG+ G
Sbjct: 887 IRHARKRREKAIGEGRVVYIQNLSSDMSSRELKRRFEVFGEIEECEVLTRNRRGEKYG 944
>BC026956-1|AAH26956.1| 741|Homo sapiens PPARGC1B protein protein.
Length = 741
Score = 32.3 bits (70), Expect = 1.4
Identities = 19/58 (32%), Positives = 30/58 (51%), Gaps = 1/58 (1%)
Frame = +1
Query: 70 MRNGRTLRVRFAPHNSAVRVKNLPPFVSNELLYRAFEIFGKIERAYVRV-DERGKTLG 240
+R+ R R + V ++NL +S+ L R FE+FG+IE V + RG+ G
Sbjct: 573 IRHARKRREKAIGEGRVVYIQNLSSDMSSRELKRRFEVFGEIEECEVLTRNRRGEKYG 630
>AY188950-1|AAO40025.1| 996|Homo sapiens peroxisome
proliferator-activated receptor gamma coactivator
1beta-2b protein.
Length = 996
Score = 32.3 bits (70), Expect = 1.4
Identities = 19/58 (32%), Positives = 30/58 (51%), Gaps = 1/58 (1%)
Frame = +1
Query: 70 MRNGRTLRVRFAPHNSAVRVKNLPPFVSNELLYRAFEIFGKIERAYVRV-DERGKTLG 240
+R+ R R + V ++NL +S+ L R FE+FG+IE V + RG+ G
Sbjct: 866 IRHARKRREKAIGEGRVVYIQNLSSDMSSRELKRRFEVFGEIEECEVLTRNRRGEKYG 923
>AY188949-1|AAO40024.1| 1002|Homo sapiens peroxisome
proliferator-activated receptor gamma coactivator
1beta-2a protein.
Length = 1002
Score = 32.3 bits (70), Expect = 1.4
Identities = 19/58 (32%), Positives = 30/58 (51%), Gaps = 1/58 (1%)
Frame = +1
Query: 70 MRNGRTLRVRFAPHNSAVRVKNLPPFVSNELLYRAFEIFGKIERAYVRV-DERGKTLG 240
+R+ R R + V ++NL +S+ L R FE+FG+IE V + RG+ G
Sbjct: 866 IRHARKRREKAIGEGRVVYIQNLSSDMSSRELKRRFEVFGEIEECEVLTRNRRGEKYG 923
>AY188948-1|AAO40023.1| 1017|Homo sapiens peroxisome
proliferator-activated receptor gamma coactivator
1beta-1b protein.
Length = 1017
Score = 32.3 bits (70), Expect = 1.4
Identities = 19/58 (32%), Positives = 30/58 (51%), Gaps = 1/58 (1%)
Frame = +1
Query: 70 MRNGRTLRVRFAPHNSAVRVKNLPPFVSNELLYRAFEIFGKIERAYVRV-DERGKTLG 240
+R+ R R + V ++NL +S+ L R FE+FG+IE V + RG+ G
Sbjct: 887 IRHARKRREKAIGEGRVVYIQNLSSDMSSRELKRRFEVFGEIEECEVLTRNRRGEKYG 944
>AY188947-1|AAO40022.1| 1023|Homo sapiens peroxisome
proliferator-activated receptor gamma coactivator
1beta-1a protein.
Length = 1023
Score = 32.3 bits (70), Expect = 1.4
Identities = 19/58 (32%), Positives = 30/58 (51%), Gaps = 1/58 (1%)
Frame = +1
Query: 70 MRNGRTLRVRFAPHNSAVRVKNLPPFVSNELLYRAFEIFGKIERAYVRV-DERGKTLG 240
+R+ R R + V ++NL +S+ L R FE+FG+IE V + RG+ G
Sbjct: 887 IRHARKRREKAIGEGRVVYIQNLSSDMSSRELKRRFEVFGEIEECEVLTRNRRGEKYG 944
>AK095391-1|BAC04541.1| 1023|Homo sapiens protein ( Homo sapiens cDNA
FLJ38072 fis, clone CTONG2015678, weakly similar to
Rattus norvegicus PGC1 mRNA for PPAR gamma coactivator.
).
Length = 1023
Score = 32.3 bits (70), Expect = 1.4
Identities = 19/58 (32%), Positives = 30/58 (51%), Gaps = 1/58 (1%)
Frame = +1
Query: 70 MRNGRTLRVRFAPHNSAVRVKNLPPFVSNELLYRAFEIFGKIERAYVRV-DERGKTLG 240
+R+ R R + V ++NL +S+ L R FE+FG+IE V + RG+ G
Sbjct: 887 IRHARKRREKAIGEGRVVYIQNLSSDMSSRELKRRFEVFGEIEECEVLTRNRRGEKYG 944
>AF468497-1|AAL78634.1| 984|Homo sapiens PGC-1-related estrogen
receptor alpha coactivator short isoform protein.
Length = 984
Score = 32.3 bits (70), Expect = 1.4
Identities = 19/58 (32%), Positives = 30/58 (51%), Gaps = 1/58 (1%)
Frame = +1
Query: 70 MRNGRTLRVRFAPHNSAVRVKNLPPFVSNELLYRAFEIFGKIERAYVRV-DERGKTLG 240
+R+ R R + V ++NL +S+ L R FE+FG+IE V + RG+ G
Sbjct: 848 IRHARKRREKAIGEGRVVYIQNLSSDMSSRELKRRFEVFGEIEECEVLTRNRRGEKYG 905
>AF468496-1|AAL78633.1| 1023|Homo sapiens PGC-1-related estrogen
receptor alpha coactivator protein.
Length = 1023
Score = 32.3 bits (70), Expect = 1.4
Identities = 19/58 (32%), Positives = 30/58 (51%), Gaps = 1/58 (1%)
Frame = +1
Query: 70 MRNGRTLRVRFAPHNSAVRVKNLPPFVSNELLYRAFEIFGKIERAYVRV-DERGKTLG 240
+R+ R R + V ++NL +S+ L R FE+FG+IE V + RG+ G
Sbjct: 887 IRHARKRREKAIGEGRVVYIQNLSSDMSSRELKRRFEVFGEIEECEVLTRNRRGEKYG 944
>BC118568-1|AAI18569.1| 252|Homo sapiens PABPC4 protein protein.
Length = 252
Score = 31.5 bits (68), Expect = 2.5
Identities = 18/54 (33%), Positives = 29/54 (53%)
Frame = +1
Query: 127 VKNLPPFVSNELLYRAFEIFGKIERAYVRVDERGKTLGEGVVEFARKPSALAAI 288
+KNL + +E L + F FG I A V +++ G++ G G V F+ A A+
Sbjct: 48 IKNLDDTIDDEKLRKEFSPFGSITSAKVMLED-GRSKGFGFVCFSSPEEATKAV 100
>BC106908-1|AAI06909.1| 281|Homo sapiens PABPC4 protein protein.
Length = 281
Score = 31.5 bits (68), Expect = 2.5
Identities = 18/54 (33%), Positives = 29/54 (53%)
Frame = +1
Query: 127 VKNLPPFVSNELLYRAFEIFGKIERAYVRVDERGKTLGEGVVEFARKPSALAAI 288
+KNL + +E L + F FG I A V +++ G++ G G V F+ A A+
Sbjct: 48 IKNLDDTIDDEKLRKEFSPFGSITSAKVMLED-GRSKGFGFVCFSSPEEATKAV 100
>AL365277-15|CAI16425.1| 410|Homo sapiens poly(A) binding protein,
cytoplasmic 4 (induciblela) protein.
Length = 410
Score = 31.5 bits (68), Expect = 2.5
Identities = 18/54 (33%), Positives = 29/54 (53%)
Frame = +1
Query: 127 VKNLPPFVSNELLYRAFEIFGKIERAYVRVDERGKTLGEGVVEFARKPSALAAI 288
+KNL + +E L + F FG I A V +++ G++ G G V F+ A A+
Sbjct: 77 IKNLDDTIDDEKLRKEFSPFGSITSAKVMLED-GRSKGFGFVCFSSPEEATKAV 129
>AK222917-1|BAD96637.1| 371|Homo sapiens PABPC4 protein variant
protein.
Length = 371
Score = 31.5 bits (68), Expect = 2.5
Identities = 18/54 (33%), Positives = 29/54 (53%)
Frame = +1
Query: 127 VKNLPPFVSNELLYRAFEIFGKIERAYVRVDERGKTLGEGVVEFARKPSALAAI 288
+KNL + +E L + F FG I A V +++ G++ G G V F+ A A+
Sbjct: 9 IKNLDDTIDDEKLRKEFSPFGSITSAKVMLED-GRSKGFGFVCFSSPEEATKAV 61
>BC040844-1|AAH40844.1| 410|Homo sapiens SYNCRIP protein protein.
Length = 410
Score = 30.3 bits (65), Expect = 5.7
Identities = 17/40 (42%), Positives = 24/40 (60%), Gaps = 7/40 (17%)
Frame = +1
Query: 127 VKNLPPFVSNELLYRAFEIFGKIER-------AYVRVDER 225
V+NL V+ E+L +AF FGK+ER A++ DER
Sbjct: 190 VRNLANTVTEEILEKAFSQFGKLERVKKLKDYAFIHFDER 229
>BC024283-1|AAH24283.1| 453|Homo sapiens Unknown (protein for
IMAGE:4079825) protein.
Length = 453
Score = 30.3 bits (65), Expect = 5.7
Identities = 17/40 (42%), Positives = 24/40 (60%), Gaps = 7/40 (17%)
Frame = +1
Query: 127 VKNLPPFVSNELLYRAFEIFGKIER-------AYVRVDER 225
V+NL V+ E+L +AF FGK+ER A++ DER
Sbjct: 378 VRNLANTVTEEILEKAFSQFGKLERVKKLKDYAFIHFDER 417
>BC015575-1|AAH15575.1| 417|Homo sapiens SYNCRIP protein protein.
Length = 417
Score = 30.3 bits (65), Expect = 5.7
Identities = 17/40 (42%), Positives = 24/40 (60%), Gaps = 7/40 (17%)
Frame = +1
Query: 127 VKNLPPFVSNELLYRAFEIFGKIER-------AYVRVDER 225
V+NL V+ E+L +AF FGK+ER A++ DER
Sbjct: 342 VRNLANTVTEEILEKAFSQFGKLERVKKLKDYAFIHFDER 381
>AY034483-1|AAK59705.1| 561|Homo sapiens hnRNP Q1 protein.
Length = 561
Score = 30.3 bits (65), Expect = 5.7
Identities = 17/40 (42%), Positives = 24/40 (60%), Gaps = 7/40 (17%)
Frame = +1
Query: 127 VKNLPPFVSNELLYRAFEIFGKIER-------AYVRVDER 225
V+NL V+ E+L +AF FGK+ER A++ DER
Sbjct: 342 VRNLANTVTEEILEKAFSQFGKLERVKKLKDYAFIHFDER 381
>AY034481-1|AAK59703.1| 623|Homo sapiens hnRNP Q3 protein.
Length = 623
Score = 30.3 bits (65), Expect = 5.7
Identities = 17/40 (42%), Positives = 24/40 (60%), Gaps = 7/40 (17%)
Frame = +1
Query: 127 VKNLPPFVSNELLYRAFEIFGKIER-------AYVRVDER 225
V+NL V+ E+L +AF FGK+ER A++ DER
Sbjct: 342 VRNLANTVTEEILEKAFSQFGKLERVKKLKDYAFIHFDER 381
>AL360236-6|CAO03371.1| 90|Homo sapiens potassium voltage-gated
channel, KQT-like subfamily, member 5 protein.
Length = 90
Score = 30.3 bits (65), Expect = 5.7
Identities = 15/33 (45%), Positives = 19/33 (57%)
Frame = +1
Query: 241 EGVVEFARKPSALAAIRNCTEKCFFLTSSLRPV 339
+G + FARKP + +RNC F SSL PV
Sbjct: 29 QGRLRFARKPFCVIGVRNCC--VIFSVSSLTPV 59
>AL136082-4|CAI20447.1| 623|Homo sapiens RP1-3J17.2 protein.
Length = 623
Score = 30.3 bits (65), Expect = 5.7
Identities = 17/40 (42%), Positives = 24/40 (60%), Gaps = 7/40 (17%)
Frame = +1
Query: 127 VKNLPPFVSNELLYRAFEIFGKIER-------AYVRVDER 225
V+NL V+ E+L +AF FGK+ER A++ DER
Sbjct: 342 VRNLANTVTEEILEKAFSQFGKLERVKKLKDYAFIHFDER 381
>AL136082-3|CAI20446.1| 562|Homo sapiens RP1-3J17.2 protein.
Length = 562
Score = 30.3 bits (65), Expect = 5.7
Identities = 17/40 (42%), Positives = 24/40 (60%), Gaps = 7/40 (17%)
Frame = +1
Query: 127 VKNLPPFVSNELLYRAFEIFGKIER-------AYVRVDER 225
V+NL V+ E+L +AF FGK+ER A++ DER
Sbjct: 342 VRNLANTVTEEILEKAFSQFGKLERVKKLKDYAFIHFDER 381
>AK222776-1|BAD96496.1| 623|Homo sapiens synaptotagmin binding,
cytoplasmic RNA interacting protein variant protein.
Length = 623
Score = 30.3 bits (65), Expect = 5.7
Identities = 17/40 (42%), Positives = 24/40 (60%), Gaps = 7/40 (17%)
Frame = +1
Query: 127 VKNLPPFVSNELLYRAFEIFGKIER-------AYVRVDER 225
V+NL V+ E+L +AF FGK+ER A++ DER
Sbjct: 342 VRNLANTVTEEILEKAFSQFGKLERVKKLKDYAFIHFDER 381
>AF155568-1|AAD38198.1| 562|Homo sapiens NSAP1 protein protein.
Length = 562
Score = 30.3 bits (65), Expect = 5.7
Identities = 17/40 (42%), Positives = 24/40 (60%), Gaps = 7/40 (17%)
Frame = +1
Query: 127 VKNLPPFVSNELLYRAFEIFGKIER-------AYVRVDER 225
V+NL V+ E+L +AF FGK+ER A++ DER
Sbjct: 342 VRNLANTVTEEILEKAFSQFGKLERVKKLKDYAFIHFDER 381
>AF037448-1|AAC12926.1| 623|Homo sapiens Gry-rbp protein.
Length = 623
Score = 30.3 bits (65), Expect = 5.7
Identities = 17/40 (42%), Positives = 24/40 (60%), Gaps = 7/40 (17%)
Frame = +1
Query: 127 VKNLPPFVSNELLYRAFEIFGKIER-------AYVRVDER 225
V+NL V+ E+L +AF FGK+ER A++ DER
Sbjct: 342 VRNLANTVTEEILEKAFSQFGKLERVKKLKDYAFIHFDER 381
>AB209098-1|BAD92335.1| 534|Homo sapiens synaptotagmin binding,
cytoplasmic RNA interacting protein variant protein.
Length = 534
Score = 30.3 bits (65), Expect = 5.7
Identities = 17/40 (42%), Positives = 24/40 (60%), Gaps = 7/40 (17%)
Frame = +1
Query: 127 VKNLPPFVSNELLYRAFEIFGKIER-------AYVRVDER 225
V+NL V+ E+L +AF FGK+ER A++ DER
Sbjct: 314 VRNLANTVTEEILEKAFSQFGKLERVKKLKDYAFIHFDER 353
>BC013981-1|AAH13981.1| 932|Homo sapiens RNA binding motif protein
12 protein.
Length = 932
Score = 29.9 bits (64), Expect = 7.5
Identities = 20/65 (30%), Positives = 31/65 (47%), Gaps = 3/65 (4%)
Frame = +1
Query: 103 APHNSA--VRVKNLPPFVSNELLYRAFEIFGKIERA-YVRVDERGKTLGEGVVEFARKPS 273
+PH + V +K LP N+ + F+ +E + Y+ GK GEG VEF +
Sbjct: 424 SPHEAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEAD 483
Query: 274 ALAAI 288
AA+
Sbjct: 484 YKAAL 488
>BC012787-1|AAH12787.1| 932|Homo sapiens RNA binding motif protein
12 protein.
Length = 932
Score = 29.9 bits (64), Expect = 7.5
Identities = 20/65 (30%), Positives = 31/65 (47%), Gaps = 3/65 (4%)
Frame = +1
Query: 103 APHNSA--VRVKNLPPFVSNELLYRAFEIFGKIERA-YVRVDERGKTLGEGVVEFARKPS 273
+PH + V +K LP N+ + F+ +E + Y+ GK GEG VEF +
Sbjct: 424 SPHEAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEAD 483
Query: 274 ALAAI 288
AA+
Sbjct: 484 YKAAL 488
>AL109827-23|CAB87611.1| 932|Homo sapiens RNA binding motif protein
12 protein.
Length = 932
Score = 29.9 bits (64), Expect = 7.5
Identities = 20/65 (30%), Positives = 31/65 (47%), Gaps = 3/65 (4%)
Frame = +1
Query: 103 APHNSA--VRVKNLPPFVSNELLYRAFEIFGKIERA-YVRVDERGKTLGEGVVEFARKPS 273
+PH + V +K LP N+ + F+ +E + Y+ GK GEG VEF +
Sbjct: 424 SPHEAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEAD 483
Query: 274 ALAAI 288
AA+
Sbjct: 484 YKAAL 488
>AJ289772-1|CAC20441.1| 932|Homo sapiens RNA binding motif protein
12 protein.
Length = 932
Score = 29.9 bits (64), Expect = 7.5
Identities = 20/65 (30%), Positives = 31/65 (47%), Gaps = 3/65 (4%)
Frame = +1
Query: 103 APHNSA--VRVKNLPPFVSNELLYRAFEIFGKIERA-YVRVDERGKTLGEGVVEFARKPS 273
+PH + V +K LP N+ + F+ +E + Y+ GK GEG VEF +
Sbjct: 424 SPHEAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEAD 483
Query: 274 ALAAI 288
AA+
Sbjct: 484 YKAAL 488
>AF393214-1|AAM73682.1| 932|Homo sapiens swan protein.
Length = 932
Score = 29.9 bits (64), Expect = 7.5
Identities = 20/65 (30%), Positives = 31/65 (47%), Gaps = 3/65 (4%)
Frame = +1
Query: 103 APHNSA--VRVKNLPPFVSNELLYRAFEIFGKIERA-YVRVDERGKTLGEGVVEFARKPS 273
+PH + V +K LP N+ + F+ +E + Y+ GK GEG VEF +
Sbjct: 424 SPHEAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEAD 483
Query: 274 ALAAI 288
AA+
Sbjct: 484 YKAAL 488
>AF345335-1|AAL83755.1| 932|Homo sapiens SWAN protein.
Length = 932
Score = 29.9 bits (64), Expect = 7.5
Identities = 20/65 (30%), Positives = 31/65 (47%), Gaps = 3/65 (4%)
Frame = +1
Query: 103 APHNSA--VRVKNLPPFVSNELLYRAFEIFGKIERA-YVRVDERGKTLGEGVVEFARKPS 273
+PH + V +K LP N+ + F+ +E + Y+ GK GEG VEF +
Sbjct: 424 SPHEAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEAD 483
Query: 274 ALAAI 288
AA+
Sbjct: 484 YKAAL 488
>AF345332-1|AAL83752.1| 932|Homo sapiens SWAN protein.
Length = 932
Score = 29.9 bits (64), Expect = 7.5
Identities = 20/65 (30%), Positives = 31/65 (47%), Gaps = 3/65 (4%)
Frame = +1
Query: 103 APHNSA--VRVKNLPPFVSNELLYRAFEIFGKIERA-YVRVDERGKTLGEGVVEFARKPS 273
+PH + V +K LP N+ + F+ +E + Y+ GK GEG VEF +
Sbjct: 424 SPHEAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEAD 483
Query: 274 ALAAI 288
AA+
Sbjct: 484 YKAAL 488
>AB018308-1|BAA34485.2| 952|Homo sapiens KIAA0765 protein protein.
Length = 952
Score = 29.9 bits (64), Expect = 7.5
Identities = 20/65 (30%), Positives = 31/65 (47%), Gaps = 3/65 (4%)
Frame = +1
Query: 103 APHNSA--VRVKNLPPFVSNELLYRAFEIFGKIERA-YVRVDERGKTLGEGVVEFARKPS 273
+PH + V +K LP N+ + F+ +E + Y+ GK GEG VEF +
Sbjct: 444 SPHEAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEAD 503
Query: 274 ALAAI 288
AA+
Sbjct: 504 YKAAL 508
>DQ351905-1|ABC73063.1| 595|Homo sapiens heterogeneous nuclear
ribonucleoprotein-R2 protein.
Length = 595
Score = 29.5 bits (63), Expect = 9.9
Identities = 16/41 (39%), Positives = 25/41 (60%), Gaps = 7/41 (17%)
Frame = +1
Query: 127 VKNLPPFVSNELLYRAFEIFGKIER-------AYVRVDERG 228
V+NL V+ E+L ++F FGK+ER A+V ++RG
Sbjct: 307 VRNLATTVTEEILEKSFSEFGKLERVKKLKDYAFVHFEDRG 347
>BX640912-1|CAE45953.1| 613|Homo sapiens hypothetical protein
protein.
Length = 613
Score = 29.5 bits (63), Expect = 9.9
Identities = 16/41 (39%), Positives = 25/41 (60%), Gaps = 7/41 (17%)
Frame = +1
Query: 127 VKNLPPFVSNELLYRAFEIFGKIER-------AYVRVDERG 228
V+NL V+ E+L ++F FGK+ER A+V ++RG
Sbjct: 325 VRNLATTVTEEILEKSFSEFGKLERVKKLKDYAFVHFEDRG 365
>BC110389-1|AAI10390.1| 607|Homo sapiens HNRPR protein protein.
Length = 607
Score = 29.5 bits (63), Expect = 9.9
Identities = 16/41 (39%), Positives = 25/41 (60%), Gaps = 7/41 (17%)
Frame = +1
Query: 127 VKNLPPFVSNELLYRAFEIFGKIER-------AYVRVDERG 228
V+NL V+ E+L ++F FGK+ER A+V ++RG
Sbjct: 319 VRNLATTVTEEILEKSFSEFGKLERVKKLKDYAFVHFEDRG 359
>BC001449-1|AAH01449.1| 636|Homo sapiens HNRPR protein protein.
Length = 636
Score = 29.5 bits (63), Expect = 9.9
Identities = 16/41 (39%), Positives = 25/41 (60%), Gaps = 7/41 (17%)
Frame = +1
Query: 127 VKNLPPFVSNELLYRAFEIFGKIER-------AYVRVDERG 228
V+NL V+ E+L ++F FGK+ER A+V ++RG
Sbjct: 348 VRNLATTVTEEILEKSFSEFGKLERVKKLKDYAFVHFEDRG 388
>AL845289-4|CAI12301.1| 129|Homo sapiens poly(A) binding protein,
cytoplasmic 4 (inducibleeceptor 116 (GPR116) protein.
Length = 129
Score = 29.5 bits (63), Expect = 9.9
Identities = 17/62 (27%), Positives = 32/62 (51%), Gaps = 8/62 (12%)
Frame = +1
Query: 34 NAERAKRELDGKMRNGRTLRVRFAPHNSAVR--------VKNLPPFVSNELLYRAFEIFG 189
+AERA ++ + G+ +R+ ++ + ++R +KNL + N+ LY F FG
Sbjct: 64 DAERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFG 123
Query: 190 KI 195
I
Sbjct: 124 NI 125
>AL365277-5|CAI16415.1| 129|Homo sapiens poly(A) binding protein,
cytoplasmic 4 (inducibleg frame 148 protein.
Length = 129
Score = 29.5 bits (63), Expect = 9.9
Identities = 17/62 (27%), Positives = 32/62 (51%), Gaps = 8/62 (12%)
Frame = +1
Query: 34 NAERAKRELDGKMRNGRTLRVRFAPHNSAVR--------VKNLPPFVSNELLYRAFEIFG 189
+AERA ++ + G+ +R+ ++ + ++R +KNL + N+ LY F FG
Sbjct: 64 DAERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFG 123
Query: 190 KI 195
I
Sbjct: 124 NI 125
>AL109936-4|CAI19027.1| 636|Homo sapiens heterogeneous nuclear
ribonucleoprotein R protein.
Length = 636
Score = 29.5 bits (63), Expect = 9.9
Identities = 16/41 (39%), Positives = 25/41 (60%), Gaps = 7/41 (17%)
Frame = +1
Query: 127 VKNLPPFVSNELLYRAFEIFGKIER-------AYVRVDERG 228
V+NL V+ E+L ++F FGK+ER A+V ++RG
Sbjct: 348 VRNLATTVTEEILEKSFSEFGKLERVKKLKDYAFVHFEDRG 388
>AL109936-3|CAI19026.1| 633|Homo sapiens heterogeneous nuclear
ribonucleoprotein R protein.
Length = 633
Score = 29.5 bits (63), Expect = 9.9
Identities = 16/41 (39%), Positives = 25/41 (60%), Gaps = 7/41 (17%)
Frame = +1
Query: 127 VKNLPPFVSNELLYRAFEIFGKIER-------AYVRVDERG 228
V+NL V+ E+L ++F FGK+ER A+V ++RG
Sbjct: 345 VRNLATTVTEEILEKSFSEFGKLERVKKLKDYAFVHFEDRG 385
>AK074596-1|BAC11082.1| 484|Homo sapiens protein ( Homo sapiens
cDNA FLJ90115 fis, clone HEMBA1006770, weakly similar to
FLOWERING TIME CONTROL PROTEIN FCA. ).
Length = 484
Score = 29.5 bits (63), Expect = 9.9
Identities = 23/76 (30%), Positives = 34/76 (44%)
Frame = +1
Query: 61 DGKMRNGRTLRVRFAPHNSAVRVKNLPPFVSNELLYRAFEIFGKIERAYVRVDERGKTLG 240
D + R G + +R P + + V L S E + R FE FG IE + G + G
Sbjct: 134 DSESRGGSSC-LRQPPSHRKLFVGMLNKQQSEEDVRRLFEAFGNIEECTILRGPDGNSKG 192
Query: 241 EGVVEFARKPSALAAI 288
V+++ A AAI
Sbjct: 193 CAFVKYSSHAEAQAAI 208
>AF000364-1|AAC39540.1| 633|Homo sapiens heterogeneous nuclear
ribonucleoprotein R protein.
Length = 633
Score = 29.5 bits (63), Expect = 9.9
Identities = 16/41 (39%), Positives = 25/41 (60%), Gaps = 7/41 (17%)
Frame = +1
Query: 127 VKNLPPFVSNELLYRAFEIFGKIER-------AYVRVDERG 228
V+NL V+ E+L ++F FGK+ER A+V ++RG
Sbjct: 345 VRNLATTVTEEILEKSFSEFGKLERVKKLKDYAFVHFEDRG 385
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 85,635,180
Number of Sequences: 237096
Number of extensions: 1736524
Number of successful extensions: 4471
Number of sequences better than 10.0: 129
Number of HSP's better than 10.0 without gapping: 4197
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4421
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 6635341780
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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