Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0007_I23
(618 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U23172-15|AAN63408.1| 374|Caenorhabditis elegans Hypothetical p... 171 4e-43
U23172-12|ABH03526.1| 562|Caenorhabditis elegans Hypothetical p... 171 4e-43
Z50110-2|CAA90446.1| 566|Caenorhabditis elegans Hypothetical pr... 48 4e-06
Z50110-1|CAA90444.1| 692|Caenorhabditis elegans Hypothetical pr... 48 4e-06
U23172-13|ABH03527.1| 282|Caenorhabditis elegans Hypothetical p... 48 4e-06
U24123-1|AAA65224.1| 646|Caenorhabditis elegans polyadenylate-b... 48 7e-06
AL032631-3|CAE54916.1| 583|Caenorhabditis elegans Hypothetical ... 48 7e-06
AL032631-2|CAA21572.1| 646|Caenorhabditis elegans Hypothetical ... 48 7e-06
Z78536-3|CAB01717.2| 360|Caenorhabditis elegans Hypothetical pr... 34 0.093
Z81038-2|CAB02757.1| 454|Caenorhabditis elegans Hypothetical pr... 33 0.12
AC006833-6|AAF60950.1| 491|Caenorhabditis elegans Hypothetical ... 30 1.5
L23645-1|AAK26138.1| 582|Caenorhabditis elegans Hypothetical pr... 29 3.5
AC024818-2|AAF60781.1| 302|Caenorhabditis elegans Temporarily a... 28 4.6
Z50045-2|CAA90363.2| 485|Caenorhabditis elegans Hypothetical pr... 28 6.1
AC024779-4|AAK68484.1| 439|Caenorhabditis elegans Hypothetical ... 27 8.1
AC006684-11|AAF39968.1| 550|Caenorhabditis elegans Hypothetical... 27 8.1
>U23172-15|AAN63408.1| 374|Caenorhabditis elegans Hypothetical
protein F25B5.7d protein.
Length = 374
Score = 171 bits (415), Expect = 4e-43
Identities = 85/199 (42%), Positives = 121/199 (60%)
Frame = +1
Query: 22 DYRVNAERAKRELDGKMRNGRTLRVRFAPHNSAVRVKNLPPFVSNELLYRAFEIFGKIER 201
D R +AE AK +DG++ +GR +RVRFA H +A+RVK L P VSNE+LY AF FG +ER
Sbjct: 158 DTRAHAESAKEAIDGRIIHGRQVRVRFAVHGAAIRVKELSPTVSNEMLYHAFSHFGDVER 217
Query: 202 AYVRVDERGKTLGEGVVEFARKPSALAAIRNCTEKCFFLTSSLRPVIVENFEEPDEFDGY 381
A VDE+G+ GEG+VEF RKP+ A+ +K F LT+S +P+I E E DE DG
Sbjct: 218 AVHIVDEKGRPTGEGIVEFERKPNCNEAMAAIRDKVFLLTASPKPLICEVLEPRDEDDGL 277
Query: 382 PEKNLPKKHPEFMRAREVGPRFSEAGSFEHEYGTRWKQLHELHRQXXXXXXXXXXXXXXX 561
E+ +P+ P + RE+GPRF SFE+ YG +WK+L+ + ++
Sbjct: 278 AERMIPRT-PGLSKERELGPRFPTPNSFEYVYGMKWKELYVVEQKRRAQLDEELRESRRR 336
Query: 562 XXXQMEYAKYEHETELLRE 618
ME A +++ ++LRE
Sbjct: 337 LESDMELAYQDYQAQMLRE 355
>U23172-12|ABH03526.1| 562|Caenorhabditis elegans Hypothetical
protein F25B5.7a protein.
Length = 562
Score = 171 bits (415), Expect = 4e-43
Identities = 85/199 (42%), Positives = 121/199 (60%)
Frame = +1
Query: 22 DYRVNAERAKRELDGKMRNGRTLRVRFAPHNSAVRVKNLPPFVSNELLYRAFEIFGKIER 201
D R +AE AK +DG++ +GR +RVRFA H +A+RVK L P VSNE+LY AF FG +ER
Sbjct: 158 DTRAHAESAKEAIDGRIIHGRQVRVRFAVHGAAIRVKELSPTVSNEMLYHAFSHFGDVER 217
Query: 202 AYVRVDERGKTLGEGVVEFARKPSALAAIRNCTEKCFFLTSSLRPVIVENFEEPDEFDGY 381
A VDE+G+ GEG+VEF RKP+ A+ +K F LT+S +P+I E E DE DG
Sbjct: 218 AVHIVDEKGRPTGEGIVEFERKPNCNEAMAAIRDKVFLLTASPKPLICEVLEPRDEDDGL 277
Query: 382 PEKNLPKKHPEFMRAREVGPRFSEAGSFEHEYGTRWKQLHELHRQXXXXXXXXXXXXXXX 561
E+ +P+ P + RE+GPRF SFE+ YG +WK+L+ + ++
Sbjct: 278 AERMIPRT-PGLSKERELGPRFPTPNSFEYVYGMKWKELYVVEQKRRAQLDEELRESRRR 336
Query: 562 XXXQMEYAKYEHETELLRE 618
ME A +++ ++LRE
Sbjct: 337 LESDMELAYQDYQAQMLRE 355
>Z50110-2|CAA90446.1| 566|Caenorhabditis elegans Hypothetical
protein F18H3.3b protein.
Length = 566
Score = 48.4 bits (110), Expect = 4e-06
Identities = 29/93 (31%), Positives = 48/93 (51%), Gaps = 8/93 (8%)
Frame = +1
Query: 34 NAERAKRELDGKMRNGRTLRVRFAPHNSAVR--------VKNLPPFVSNELLYRAFEIFG 189
+AERA ++ ++ +GR +R+ ++ + A R +KNL + N+ +Y F +FG
Sbjct: 110 DAERALDTMNFEVIHGRPMRIMWSQRDPAARRAGNGNIFIKNLDRVIDNKSVYDTFSLFG 169
Query: 190 KIERAYVRVDERGKTLGEGVVEFARKPSALAAI 288
I V D+ G + G G V F + SA AI
Sbjct: 170 NILSCKVATDDEGNSKGYGFVHFETEHSAQTAI 202
Score = 38.7 bits (86), Expect = 0.003
Identities = 22/60 (36%), Positives = 32/60 (53%)
Frame = +1
Query: 127 VKNLPPFVSNELLYRAFEIFGKIERAYVRVDERGKTLGEGVVEFARKPSALAAIRNCTEK 306
VKN+ ++++ L F FG I A V VDE G++ G G V F + A AA+ + K
Sbjct: 347 VKNIEEDLNDDGLRDHFSSFGTITSAKVMVDENGRSKGFGFVCFEKPEEATAAVTDMNSK 406
Score = 36.7 bits (81), Expect = 0.013
Identities = 22/61 (36%), Positives = 29/61 (47%)
Frame = +1
Query: 121 VRVKNLPPFVSNELLYRAFEIFGKIERAYVRVDERGKTLGEGVVEFARKPSALAAIRNCT 300
V VKN + E L F FG+I A V D +GK G G V FA + +A A+
Sbjct: 240 VFVKNFGEHLDQEKLSAMFSKFGEITSAVVMTDAQGKPKGFGFVAFADQDAAGQAVEKLN 299
Query: 301 E 303
+
Sbjct: 300 D 300
>Z50110-1|CAA90444.1| 692|Caenorhabditis elegans Hypothetical
protein F18H3.3a protein.
Length = 692
Score = 48.4 bits (110), Expect = 4e-06
Identities = 29/93 (31%), Positives = 48/93 (51%), Gaps = 8/93 (8%)
Frame = +1
Query: 34 NAERAKRELDGKMRNGRTLRVRFAPHNSAVR--------VKNLPPFVSNELLYRAFEIFG 189
+AERA ++ ++ +GR +R+ ++ + A R +KNL + N+ +Y F +FG
Sbjct: 110 DAERALDTMNFEVIHGRPMRIMWSQRDPAARRAGNGNIFIKNLDRVIDNKSVYDTFSLFG 169
Query: 190 KIERAYVRVDERGKTLGEGVVEFARKPSALAAI 288
I V D+ G + G G V F + SA AI
Sbjct: 170 NILSCKVATDDEGNSKGYGFVHFETEHSAQTAI 202
Score = 38.7 bits (86), Expect = 0.003
Identities = 22/60 (36%), Positives = 32/60 (53%)
Frame = +1
Query: 127 VKNLPPFVSNELLYRAFEIFGKIERAYVRVDERGKTLGEGVVEFARKPSALAAIRNCTEK 306
VKN+ ++++ L F FG I A V VDE G++ G G V F + A AA+ + K
Sbjct: 347 VKNIEEDLNDDGLRDHFSSFGTITSAKVMVDENGRSKGFGFVCFEKPEEATAAVTDMNSK 406
Score = 36.7 bits (81), Expect = 0.013
Identities = 22/61 (36%), Positives = 29/61 (47%)
Frame = +1
Query: 121 VRVKNLPPFVSNELLYRAFEIFGKIERAYVRVDERGKTLGEGVVEFARKPSALAAIRNCT 300
V VKN + E L F FG+I A V D +GK G G V FA + +A A+
Sbjct: 240 VFVKNFGEHLDQEKLSAMFSKFGEITSAVVMTDAQGKPKGFGFVAFADQDAAGQAVEKLN 299
Query: 301 E 303
+
Sbjct: 300 D 300
>U23172-13|ABH03527.1| 282|Caenorhabditis elegans Hypothetical
protein F25B5.7c protein.
Length = 282
Score = 48.4 bits (110), Expect = 4e-06
Identities = 21/70 (30%), Positives = 35/70 (50%)
Frame = +1
Query: 409 PEFMRAREVGPRFSEAGSFEHEYGTRWKQLHELHRQXXXXXXXXXXXXXXXXXXQMEYAK 588
P + RE+GPRF SFE+ YG +WK+L+ + ++ ME A
Sbjct: 6 PGLSKERELGPRFPTPNSFEYVYGMKWKELYVVEQKRRAQLDEELRESRRRLESDMELAY 65
Query: 589 YEHETELLRE 618
+++ ++LRE
Sbjct: 66 QDYQAQMLRE 75
>U24123-1|AAA65224.1| 646|Caenorhabditis elegans
polyadenylate-binding protein protein.
Length = 646
Score = 47.6 bits (108), Expect = 7e-06
Identities = 28/94 (29%), Positives = 50/94 (53%), Gaps = 8/94 (8%)
Frame = +1
Query: 34 NAERAKRELDGKMRNGRTLRVRFAPHNSAVR--------VKNLPPFVSNELLYRAFEIFG 189
+AERA ++ + +G+ +R+ ++ + A+R +KNL + N+ +Y F +FG
Sbjct: 85 DAERAMDTMNFEALHGKPMRIMWSQRDPAMRRSGAGNIFIKNLDKVIDNKSIYDTFSLFG 144
Query: 190 KIERAYVRVDERGKTLGEGVVEFARKPSALAAIR 291
I V +DE G + G G V F + +A AI+
Sbjct: 145 NILSCKVAIDEDGFSKGYGFVHFETEEAAQNAIQ 178
>AL032631-3|CAE54916.1| 583|Caenorhabditis elegans Hypothetical
protein Y106G6H.2b protein.
Length = 583
Score = 47.6 bits (108), Expect = 7e-06
Identities = 28/94 (29%), Positives = 50/94 (53%), Gaps = 8/94 (8%)
Frame = +1
Query: 34 NAERAKRELDGKMRNGRTLRVRFAPHNSAVR--------VKNLPPFVSNELLYRAFEIFG 189
+AERA ++ + +G+ +R+ ++ + A+R +KNL + N+ +Y F +FG
Sbjct: 22 DAERAMDTMNFEALHGKPMRIMWSQRDPAMRRSGAGNIFIKNLDKVIDNKSIYDTFSLFG 81
Query: 190 KIERAYVRVDERGKTLGEGVVEFARKPSALAAIR 291
I V +DE G + G G V F + +A AI+
Sbjct: 82 NILSCKVAIDEDGFSKGYGFVHFETEEAAQNAIQ 115
>AL032631-2|CAA21572.1| 646|Caenorhabditis elegans Hypothetical
protein Y106G6H.2a protein.
Length = 646
Score = 47.6 bits (108), Expect = 7e-06
Identities = 28/94 (29%), Positives = 50/94 (53%), Gaps = 8/94 (8%)
Frame = +1
Query: 34 NAERAKRELDGKMRNGRTLRVRFAPHNSAVR--------VKNLPPFVSNELLYRAFEIFG 189
+AERA ++ + +G+ +R+ ++ + A+R +KNL + N+ +Y F +FG
Sbjct: 85 DAERAMDTMNFEALHGKPMRIMWSQRDPAMRRSGAGNIFIKNLDKVIDNKSIYDTFSLFG 144
Query: 190 KIERAYVRVDERGKTLGEGVVEFARKPSALAAIR 291
I V +DE G + G G V F + +A AI+
Sbjct: 145 NILSCKVAIDEDGFSKGYGFVHFETEEAAQNAIQ 178
>Z78536-3|CAB01717.2| 360|Caenorhabditis elegans Hypothetical
protein C07A4.1 protein.
Length = 360
Score = 33.9 bits (74), Expect = 0.093
Identities = 25/63 (39%), Positives = 31/63 (49%), Gaps = 1/63 (1%)
Frame = +1
Query: 121 VRVKNLPPFVSNELLYRAFEIFGKIERAYVRVD-ERGKTLGEGVVEFARKPSALAAIRNC 297
V V +L VSNELL F FG++ A V D + K+ G G V F K +A AI
Sbjct: 137 VFVGDLSKDVSNELLKSTFTKFGEVSEAKVIRDVQTQKSKGYGFVSFPNKQNAENAIAGM 196
Query: 298 TEK 306
K
Sbjct: 197 NGK 199
>Z81038-2|CAB02757.1| 454|Caenorhabditis elegans Hypothetical
protein C25A1.4 protein.
Length = 454
Score = 33.5 bits (73), Expect = 0.12
Identities = 17/54 (31%), Positives = 28/54 (51%)
Frame = +1
Query: 127 VKNLPPFVSNELLYRAFEIFGKIERAYVRVDERGKTLGEGVVEFARKPSALAAI 288
+ NL V + LY F + GKI R+D+ GK+ G V+++ A+ A+
Sbjct: 192 IANLAFNVGTDKLYEVFGMAGKITWMDFRIDKEGKSKGVCVIQYTHPIEAVQAV 245
>AC006833-6|AAF60950.1| 491|Caenorhabditis elegans Hypothetical
protein ZK616.1 protein.
Length = 491
Score = 29.9 bits (64), Expect = 1.5
Identities = 14/40 (35%), Positives = 23/40 (57%)
Frame = +1
Query: 22 DYRVNAERAKRELDGKMRNGRTLRVRFAPHNSAVRVKNLP 141
D R NA++ E+DGK NG+ + V +A ++ R + P
Sbjct: 138 DTRANAQKKIVEMDGKTLNGKLISVSWARPDTVGRKRKRP 177
>L23645-1|AAK26138.1| 582|Caenorhabditis elegans Hypothetical
protein F54F2.5a protein.
Length = 582
Score = 28.7 bits (61), Expect = 3.5
Identities = 12/26 (46%), Positives = 18/26 (69%)
Frame = +2
Query: 482 QDGSNSMSFTDRRKRRLRKSWPLKKK 559
+ G N +SFTD+ K+R R++ KKK
Sbjct: 134 EPGCNFLSFTDQEKKRHRRTHDKKKK 159
>AC024818-2|AAF60781.1| 302|Caenorhabditis elegans Temporarily
assigned gene nameprotein 262 protein.
Length = 302
Score = 28.3 bits (60), Expect = 4.6
Identities = 18/54 (33%), Positives = 26/54 (48%), Gaps = 1/54 (1%)
Frame = +1
Query: 148 VSNELLYRAFEIFGKIERA-YVRVDERGKTLGEGVVEFARKPSALAAIRNCTEK 306
VS+ELL +AF + ++A VR K+ G G V F + A+R K
Sbjct: 214 VSDELLAKAFRKYPSFQKAKVVRESRTNKSKGYGFVSFRDSEDYVRAMREMDGK 267
>Z50045-2|CAA90363.2| 485|Caenorhabditis elegans Hypothetical
protein F38B2.3 protein.
Length = 485
Score = 27.9 bits (59), Expect = 6.1
Identities = 19/56 (33%), Positives = 25/56 (44%)
Frame = +1
Query: 241 EGVVEFARKPSALAAIRNCTEKCFFLTSSLRPVIVENFEEPDEFDGYPEKNLPKKH 408
E + A KP ALA+ C EK LT + VI+ + G+P P KH
Sbjct: 139 ESTIVTASKPFALASDCACPEKRMNLTGHMSSVIIRS-------PGFPNLYCPGKH 187
>AC024779-4|AAK68484.1| 439|Caenorhabditis elegans Hypothetical
protein Y43B11AL.1 protein.
Length = 439
Score = 27.5 bits (58), Expect = 8.1
Identities = 18/61 (29%), Positives = 27/61 (44%)
Frame = -3
Query: 235 MSSLFHLLSRKLFQFSQIFQKLYTKAHLTQTVVNSSHVQHCCGGQILL*VSFHFSFSHLI 56
MS+ FHLL L ++F+K + + + S+ V+ L V H FSH
Sbjct: 1 MSTPFHLLKLPLVAQQEVFKK-FEIVDIVEISFTSTRVRDTLRSTRLRAVEHHVKFSHDY 59
Query: 55 P 53
P
Sbjct: 60 P 60
>AC006684-11|AAF39968.1| 550|Caenorhabditis elegans Hypothetical
protein T02H6.1a protein.
Length = 550
Score = 27.5 bits (58), Expect = 8.1
Identities = 12/33 (36%), Positives = 20/33 (60%)
Frame = +2
Query: 476 MVQDGSNSMSFTDRRKRRLRKSWPLKKKSWRHK 574
+V + SN + ++K+ RKSW +KK R+K
Sbjct: 480 VVVEESNRVMNLKKKKKSWRKSWKRRKKKLRNK 512
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,574,647
Number of Sequences: 27780
Number of extensions: 278780
Number of successful extensions: 845
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 817
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 841
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1342816466
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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