Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0007_I22
         (659 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC16A10.03c |||zinc finger protein Pep5/Vps11 |Schizosaccharom...    28   1.0  
SPBP19A11.07c ||SPBP4H10.02c|human down-regulated in multiple ca...    25   9.7  

>SPAC16A10.03c |||zinc finger protein Pep5/Vps11
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 860

 Score = 28.3 bits (60), Expect = 1.0
 Identities = 9/22 (40%), Positives = 17/22 (77%)
 Frame = +3

Query: 246 VCIEGIKQKGNLKKKHNQIQIC 311
           VC+E  ++KG+++K  N +Q+C
Sbjct: 496 VCMEVYQEKGDVEKAFNHLQVC 517


>SPBP19A11.07c ||SPBP4H10.02c|human down-regulated in multiple
           cancers-1 homolog 2|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 676

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 13/71 (18%), Positives = 30/71 (42%)
 Frame = +2

Query: 311 FIL*LQKYS*IVHNCKVKSFQIPWLFQDFRRCIINSIITYFIQIKYSLHMCCNFISNLKE 490
           F++  +  +  + N   K  QI     DF+RC++ S+   F+ +          ++    
Sbjct: 319 FLIIAESINKFLSNPLKKERQIITFMGDFKRCVVESLCFLFLLLTNQPRFTDELVNFKSS 378

Query: 491 IKKYISLFLVH 523
            +  ++L  +H
Sbjct: 379 NEMMMNLLFIH 389


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,702,031
Number of Sequences: 5004
Number of extensions: 53869
Number of successful extensions: 126
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 122
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 126
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 299817502
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)