Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0007_I21
(364 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC23A1.10 |ef1a-b||translation elongation factor EF-1 alpha Ef... 125 2e-30
SPCC794.09c |ef1a-a||translation elongation factor EF-1 alpha Ef... 125 2e-30
SPBC839.15c |ef1a-c||translation elongation factor EF-1 alpha Ef... 125 2e-30
SPCC584.04 |sup35|erf3|translation release factor eRF3 |Schizosa... 73 2e-14
SPBC25B2.01 ||SPBC2G5.08|elongation factor 1 alpha related prote... 66 1e-12
SPBC9B6.04c |tuf1||mitochondrial translation elongation factor E... 48 6e-07
SPBC660.10 |||translation elongation factor G|Schizosaccharomyce... 42 4e-05
SPAC1B3.04c |||mitochondrial GTPase Guf1 |Schizosaccharomyces po... 39 3e-04
SPCP31B10.07 |eft202||translation elongation factor 2 |Schizosac... 34 0.006
SPAC513.01c |eft201|eft2-1, etf2, SPAPYUK71.04c|translation elon... 34 0.006
SPAC9G1.11c |spn4||septin Spn4|Schizosaccharomyces pombe|chr 1||... 29 0.22
SPBC1306.01c ||SPBC409.22c|translation elongation factor G|Schiz... 29 0.22
SPCC1620.14c |snf22|SPCC830.01c|ATP-dependent DNA helicase Snf22... 28 0.51
SPAC2F7.10 |||palmitoyltransferase |Schizosaccharomyces pombe|ch... 26 1.6
SPBC1271.15c |||translation initiation factor IF-2Mt|Schizosacch... 26 1.6
SPBC17G9.09 |tif213||translation initiation factor eIF2 gamma su... 25 3.6
SPAC7D4.04 |taf1||Taz1 interacting factor 1|Schizosaccharomyces ... 25 3.6
SPBC2F12.14c |gua1||IMP dehydrogenase Gua1 |Schizosaccharomyces ... 25 3.6
SPCC1223.01 ||SPCC285.18|ubiquitin-protein ligase E3 |Schizosacc... 25 3.6
SPCC553.08c |||GTPase Ria1 |Schizosaccharomyces pombe|chr 3|||Ma... 25 3.6
SPBC18H10.02 |lcf1||long-chain-fatty-acid-CoA ligase Lcf1 |Schiz... 25 3.6
SPBC215.12 |cwf10|spef2, snu114|GTPase Cwf10 |Schizosaccharomyce... 25 4.8
SPAC3A12.07 |rpb11||DNA-directed RNA polymerase II complex subun... 24 6.3
SPAC2G11.11c |prh1||ATP-dependent RNA helicase Prh1|Schizosaccha... 24 6.3
SPAC20H4.09 |||ATP-dependent RNA helicase, spliceosomal |Schizos... 24 6.3
SPBC1711.17 |prp16|SPBC17G9.01|ATP-dependent RNA helicase Prp16|... 24 8.3
SPCC1827.06c |||aspartate semialdehyde dehydrogenase|Schizosacch... 24 8.3
SPBC1105.08 |||EMP70 family|Schizosaccharomyces pombe|chr 2|||Ma... 24 8.3
SPBC12C2.11 ||SPBC21D10.02|glutamine-fructose-6-phosphate transa... 24 8.3
>SPAC23A1.10 |ef1a-b||translation elongation factor EF-1 alpha
Ef1a-b |Schizosaccharomyces pombe|chr 1|||Manual
Length = 460
Score = 125 bits (301), Expect = 2e-30
Identities = 56/64 (87%), Positives = 59/64 (92%)
Frame = +1
Query: 55 MGKEKVHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVF 234
MGKEK HIN+VVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEA E+GKGSFKYAWV
Sbjct: 1 MGKEKGHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEATELGKGSFKYAWVL 60
Query: 235 GQTK 246
+ K
Sbjct: 61 DKLK 64
Score = 89.8 bits (213), Expect = 1e-19
Identities = 41/44 (93%), Positives = 42/44 (95%)
Frame = +2
Query: 233 LDKLKAERERGITIDIALWKFETGKYYVTIIDAPGHRDFIKNMI 364
LDKLKAERERGITIDIALWKFET KY VT+IDAPGHRDFIKNMI
Sbjct: 60 LDKLKAERERGITIDIALWKFETPKYNVTVIDAPGHRDFIKNMI 103
>SPCC794.09c |ef1a-a||translation elongation factor EF-1 alpha
Ef1a-a |Schizosaccharomyces pombe|chr 3|||Manual
Length = 460
Score = 125 bits (301), Expect = 2e-30
Identities = 56/64 (87%), Positives = 59/64 (92%)
Frame = +1
Query: 55 MGKEKVHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVF 234
MGKEK HIN+VVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEA E+GKGSFKYAWV
Sbjct: 1 MGKEKGHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEATELGKGSFKYAWVL 60
Query: 235 GQTK 246
+ K
Sbjct: 61 DKLK 64
Score = 89.8 bits (213), Expect = 1e-19
Identities = 41/44 (93%), Positives = 42/44 (95%)
Frame = +2
Query: 233 LDKLKAERERGITIDIALWKFETGKYYVTIIDAPGHRDFIKNMI 364
LDKLKAERERGITIDIALWKFET KY VT+IDAPGHRDFIKNMI
Sbjct: 60 LDKLKAERERGITIDIALWKFETPKYNVTVIDAPGHRDFIKNMI 103
>SPBC839.15c |ef1a-c||translation elongation factor EF-1 alpha
Ef1a-c |Schizosaccharomyces pombe|chr 2|||Manual
Length = 460
Score = 125 bits (301), Expect = 2e-30
Identities = 56/64 (87%), Positives = 59/64 (92%)
Frame = +1
Query: 55 MGKEKVHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVF 234
MGKEK HIN+VVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEA E+GKGSFKYAWV
Sbjct: 1 MGKEKGHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEATELGKGSFKYAWVL 60
Query: 235 GQTK 246
+ K
Sbjct: 61 DKLK 64
Score = 89.8 bits (213), Expect = 1e-19
Identities = 41/44 (93%), Positives = 42/44 (95%)
Frame = +2
Query: 233 LDKLKAERERGITIDIALWKFETGKYYVTIIDAPGHRDFIKNMI 364
LDKLKAERERGITIDIALWKFET KY VT+IDAPGHRDFIKNMI
Sbjct: 60 LDKLKAERERGITIDIALWKFETPKYNVTVIDAPGHRDFIKNMI 103
>SPCC584.04 |sup35|erf3|translation release factor eRF3
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 662
Score = 72.5 bits (170), Expect = 2e-14
Identities = 31/59 (52%), Positives = 43/59 (72%)
Frame = +1
Query: 67 KVHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVFGQT 243
K H+NIV IGHVD+GKST G++++ G +DKRT+EK E+EA+E GK S+ +W T
Sbjct: 236 KEHVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDST 294
Score = 44.0 bits (99), Expect = 7e-06
Identities = 18/44 (40%), Positives = 28/44 (63%)
Frame = +2
Query: 233 LDKLKAERERGITIDIALWKFETGKYYVTIIDAPGHRDFIKNMI 364
LD ERE+G T+++ FET +++DAPGH+ ++ NMI
Sbjct: 291 LDSTSEEREKGKTVEVGRAYFETEHRRFSLLDAPGHKGYVTNMI 334
>SPBC25B2.01 ||SPBC2G5.08|elongation factor 1 alpha related
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 592
Score = 66.5 bits (155), Expect = 1e-12
Identities = 27/57 (47%), Positives = 40/57 (70%)
Frame = +1
Query: 76 INIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVFGQTK 246
+++VV GHVDSGKST G ++++ G I+ R+++K EA GKGSF YAW+ T+
Sbjct: 178 VHLVVTGHVDSGKSTMLGRIMFELGEINSRSMQKLHNEAANSGKGSFSYAWLLDTTE 234
Score = 51.2 bits (117), Expect = 5e-08
Identities = 24/44 (54%), Positives = 29/44 (65%)
Frame = +2
Query: 233 LDKLKAERERGITIDIALWKFETGKYYVTIIDAPGHRDFIKNMI 364
LD + ER RG+T+D+A FE+ K I DAPGHRDFI MI
Sbjct: 230 LDTTEEERARGVTMDVASTTFESDKKIYEIGDAPGHRDFISGMI 273
>SPBC9B6.04c |tuf1||mitochondrial translation elongation factor
EF-Tu Tuf1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 439
Score = 47.6 bits (108), Expect = 6e-07
Identities = 21/44 (47%), Positives = 28/44 (63%)
Frame = +2
Query: 233 LDKLKAERERGITIDIALWKFETGKYYVTIIDAPGHRDFIKNMI 364
+DK E+ RGITI A ++ET + +D PGH D+IKNMI
Sbjct: 91 IDKAPEEKARGITISSAHVEYETANRHYAHVDCPGHADYIKNMI 134
Score = 34.7 bits (76), Expect = 0.004
Identities = 16/29 (55%), Positives = 20/29 (68%)
Frame = +1
Query: 61 KEKVHINIVVIGHVDSGKSTTTGHLIYKC 147
++K H+NI IGHVD GK+T T I KC
Sbjct: 49 RKKPHVNIGTIGHVDHGKTTLTA-AITKC 76
>SPBC660.10 |||translation elongation factor G|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 813
Score = 41.5 bits (93), Expect = 4e-05
Identities = 19/39 (48%), Positives = 24/39 (61%)
Frame = +2
Query: 233 LDKLKAERERGITIDIALWKFETGKYYVTIIDAPGHRDF 349
+D L AER+RGITI+ A F + +ID PGH DF
Sbjct: 68 MDYLPAERQRGITINSAAISFTWRNQRINLIDTPGHADF 106
Score = 28.7 bits (61), Expect = 0.29
Identities = 10/24 (41%), Positives = 17/24 (70%)
Frame = +1
Query: 79 NIVVIGHVDSGKSTTTGHLIYKCG 150
N+ +I H+D+GK+T T ++Y G
Sbjct: 30 NVGIIAHIDAGKTTLTEKMLYYGG 53
>SPAC1B3.04c |||mitochondrial GTPase Guf1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 646
Score = 38.7 bits (86), Expect = 3e-04
Identities = 18/44 (40%), Positives = 26/44 (59%), Gaps = 4/44 (9%)
Frame = +2
Query: 230 YLDKLKAERERGITIDI----ALWKFETGKYYVTIIDAPGHRDF 349
+LDKL+ ER RGIT+ ++ + Y + +ID PGH DF
Sbjct: 94 FLDKLEVERRRGITVKAQTCSMIYYYHGQSYLLNLIDTPGHVDF 137
Score = 24.6 bits (51), Expect = 4.8
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = +1
Query: 79 NIVVIGHVDSGKSTTTGHLIYKCGGIDK 162
N VI H+D GKST + ++ G I++
Sbjct: 60 NWAVIAHIDHGKSTLSDCILKLTGVINE 87
>SPCP31B10.07 |eft202||translation elongation factor 2
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 842
Score = 34.3 bits (75), Expect = 0.006
Identities = 17/32 (53%), Positives = 19/32 (59%)
Frame = +1
Query: 55 MGKEKVHINIVVIGHVDSGKSTTTGHLIYKCG 150
MGK N+ VI HVD GKST T L+ K G
Sbjct: 13 MGKPSNVRNMSVIAHVDHGKSTLTDSLVQKAG 44
Score = 23.8 bits (49), Expect = 8.3
Identities = 8/14 (57%), Positives = 11/14 (78%)
Frame = +2
Query: 308 YYVTIIDAPGHRDF 349
+ V +ID+PGH DF
Sbjct: 98 FLVNLIDSPGHVDF 111
>SPAC513.01c |eft201|eft2-1, etf2, SPAPYUK71.04c|translation
elongation factor 2 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 842
Score = 34.3 bits (75), Expect = 0.006
Identities = 17/32 (53%), Positives = 19/32 (59%)
Frame = +1
Query: 55 MGKEKVHINIVVIGHVDSGKSTTTGHLIYKCG 150
MGK N+ VI HVD GKST T L+ K G
Sbjct: 13 MGKPSNVRNMSVIAHVDHGKSTLTDSLVQKAG 44
Score = 23.8 bits (49), Expect = 8.3
Identities = 8/14 (57%), Positives = 11/14 (78%)
Frame = +2
Query: 308 YYVTIIDAPGHRDF 349
+ V +ID+PGH DF
Sbjct: 98 FLVNLIDSPGHVDF 111
>SPAC9G1.11c |spn4||septin Spn4|Schizosaccharomyces pombe|chr
1|||Manual
Length = 380
Score = 29.1 bits (62), Expect = 0.22
Identities = 15/44 (34%), Positives = 27/44 (61%), Gaps = 3/44 (6%)
Frame = +2
Query: 236 DKLKAER-ERGITIDIALWKFETGKYYV--TIIDAPGHRDFIKN 358
+K++A+ E+ + I+I + E +++ T+ID PG DFI N
Sbjct: 60 EKVRAKHAEKTVEIEITKAELEEKNFHLRLTVIDTPGFGDFINN 103
>SPBC1306.01c ||SPBC409.22c|translation elongation factor
G|Schizosaccharomyces pombe|chr 2|||Manual
Length = 770
Score = 29.1 bits (62), Expect = 0.22
Identities = 12/26 (46%), Positives = 17/26 (65%)
Frame = +1
Query: 79 NIVVIGHVDSGKSTTTGHLIYKCGGI 156
NI + H+DSGK+T T ++Y G I
Sbjct: 61 NIGISAHIDSGKTTFTERVLYYTGRI 86
Score = 26.6 bits (56), Expect = 1.2
Identities = 24/68 (35%), Positives = 30/68 (44%), Gaps = 19/68 (27%)
Frame = +2
Query: 203 VRVPSNTLGYLDKLKAERERGITIDIAL----WK---------------FETGKYYVTII 325
VR N +D ++ ERE+GITI A W+ FE Y + II
Sbjct: 92 VRGKDNVGAKMDFMELEREKGITIQSAATHCTWERTVDQIEANEKQKTDFEKS-YNINII 150
Query: 326 DAPGHRDF 349
D PGH DF
Sbjct: 151 DTPGHIDF 158
>SPCC1620.14c |snf22|SPCC830.01c|ATP-dependent DNA helicase
Snf22|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1680
Score = 27.9 bits (59), Expect = 0.51
Identities = 11/34 (32%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
Frame = -3
Query: 239 CPNTQAYLKEPLPIS-WASFSNFSMVRLSIPPHL 141
C + + Y+K P+P S ++S N S++ +PP +
Sbjct: 566 CVDPRTYVKTPIPFSKFSSSENLSLIPSLLPPSI 599
>SPAC2F7.10 |||palmitoyltransferase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 642
Score = 26.2 bits (55), Expect = 1.6
Identities = 10/24 (41%), Positives = 15/24 (62%)
Frame = +2
Query: 146 AVVSTNVPSKSSRRKPRKWVRVPS 217
A++S + K + +P KWV VPS
Sbjct: 224 ALISNGLKVKETSEEPEKWVVVPS 247
>SPBC1271.15c |||translation initiation factor
IF-2Mt|Schizosaccharomyces pombe|chr 2|||Manual
Length = 686
Score = 26.2 bits (55), Expect = 1.6
Identities = 12/31 (38%), Positives = 17/31 (54%), Gaps = 2/31 (6%)
Frame = +2
Query: 263 GITIDIALWK--FETGKYYVTIIDAPGHRDF 349
GIT I + F+ G ++T +D PGH F
Sbjct: 203 GITQKIGAFTVPFDKGSKFITFLDTPGHMAF 233
>SPBC17G9.09 |tif213||translation initiation factor eIF2 gamma
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 446
Score = 25.0 bits (52), Expect = 3.6
Identities = 12/24 (50%), Positives = 14/24 (58%)
Frame = +1
Query: 49 PKMGKEKVHINIVVIGHVDSGKST 120
P + + INI IGHV GKST
Sbjct: 15 PAIISRQATINIGTIGHVAHGKST 38
>SPAC7D4.04 |taf1||Taz1 interacting factor 1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 926
Score = 25.0 bits (52), Expect = 3.6
Identities = 10/33 (30%), Positives = 20/33 (60%)
Frame = +2
Query: 158 TNVPSKSSRRKPRKWVRVPSNTLGYLDKLKAER 256
T++ +++ KW+R+PS T+ +L + ER
Sbjct: 893 TSIEDRTADDSTDKWLRLPSGTIWHLVEAIDER 925
>SPBC2F12.14c |gua1||IMP dehydrogenase Gua1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 524
Score = 25.0 bits (52), Expect = 3.6
Identities = 12/41 (29%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
Frame = +2
Query: 245 KAERERGITID-IALWKFETGKYYVTIIDAPGHRDFIKNMI 364
K E++ G++ID + F+ G + + PG+ DF+ N +
Sbjct: 16 KYEKKDGLSIDDLIRHNFQGGLTFNDFLILPGYIDFVPNNV 56
>SPCC1223.01 ||SPCC285.18|ubiquitin-protein ligase E3
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 732
Score = 25.0 bits (52), Expect = 3.6
Identities = 8/20 (40%), Positives = 14/20 (70%), Gaps = 1/20 (5%)
Frame = +1
Query: 268 HHRY-CSLEVRNRQILCHHH 324
HH++ C L V+N+++ H H
Sbjct: 196 HHKFFCDLCVKNKKVFTHEH 215
>SPCC553.08c |||GTPase Ria1 |Schizosaccharomyces pombe|chr
3|||Manual
Length = 1000
Score = 25.0 bits (52), Expect = 3.6
Identities = 8/14 (57%), Positives = 11/14 (78%)
Frame = +2
Query: 308 YYVTIIDAPGHRDF 349
Y + +ID+PGH DF
Sbjct: 94 YLINLIDSPGHVDF 107
Score = 23.8 bits (49), Expect = 8.3
Identities = 10/29 (34%), Positives = 15/29 (51%)
Frame = +1
Query: 79 NIVVIGHVDSGKSTTTGHLIYKCGGIDKR 165
N ++ HVD GK+T L+ G I +
Sbjct: 21 NFTLLAHVDHGKTTLADSLLASNGIISSK 49
>SPBC18H10.02 |lcf1||long-chain-fatty-acid-CoA ligase Lcf1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 676
Score = 25.0 bits (52), Expect = 3.6
Identities = 10/20 (50%), Positives = 14/20 (70%)
Frame = +2
Query: 200 WVRVPSNTLGYLDKLKAERE 259
W+R PS T GYL++ K +E
Sbjct: 487 WLRGPSLTRGYLNRDKENKE 506
>SPBC215.12 |cwf10|spef2, snu114|GTPase Cwf10 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 983
Score = 24.6 bits (51), Expect = 4.8
Identities = 16/49 (32%), Positives = 24/49 (48%), Gaps = 5/49 (10%)
Frame = +2
Query: 221 TLGYLDKLKAERERGITID-----IALWKFETGKYYVTIIDAPGHRDFI 352
+L Y D ERER ++I +A+ + + ID PGH DF+
Sbjct: 175 SLRYTDTHYLERERVMSIKSTPLTLAVSDMKGKTFAFQCIDTPGHVDFV 223
>SPAC3A12.07 |rpb11||DNA-directed RNA polymerase II complex subunit
Rpb11|Schizosaccharomyces pombe|chr 1|||Manual
Length = 123
Score = 24.2 bits (50), Expect = 6.3
Identities = 8/26 (30%), Positives = 17/26 (65%)
Frame = -1
Query: 364 DHVLDEISVSRSVDDGDIVFAGFELP 287
DH L + ++ + D ++FAG+++P
Sbjct: 38 DHTLANMLANQLLSDERVLFAGYKVP 63
>SPAC2G11.11c |prh1||ATP-dependent RNA helicase
Prh1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 719
Score = 24.2 bits (50), Expect = 6.3
Identities = 10/22 (45%), Positives = 13/22 (59%)
Frame = +1
Query: 82 IVVIGHVDSGKSTTTGHLIYKC 147
IVV+G SGKST + +C
Sbjct: 115 IVVVGETGSGKSTQIPQFLNEC 136
>SPAC20H4.09 |||ATP-dependent RNA helicase, spliceosomal
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 647
Score = 24.2 bits (50), Expect = 6.3
Identities = 8/22 (36%), Positives = 13/22 (59%)
Frame = +1
Query: 85 VVIGHVDSGKSTTTGHLIYKCG 150
+V+GH GK+T +Y+ G
Sbjct: 45 IVLGHTGCGKTTQIPQFLYEAG 66
>SPBC1711.17 |prp16|SPBC17G9.01|ATP-dependent RNA helicase
Prp16|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1173
Score = 23.8 bits (49), Expect = 8.3
Identities = 8/23 (34%), Positives = 14/23 (60%)
Frame = +1
Query: 82 IVVIGHVDSGKSTTTGHLIYKCG 150
++V+G SGK+T +Y+ G
Sbjct: 511 LIVVGETGSGKTTQLAQFLYEDG 533
>SPCC1827.06c |||aspartate semialdehyde
dehydrogenase|Schizosaccharomyces pombe|chr 3|||Manual
Length = 357
Score = 23.8 bits (49), Expect = 8.3
Identities = 13/39 (33%), Positives = 24/39 (61%)
Frame = +2
Query: 143 NAVVSTNVPSKSSRRKPRKWVRVPSNTLGYLDKLKAERE 259
N V+ +N +K+ RR+P + VP+ +LD +K +R+
Sbjct: 100 NLVIVSN--AKNYRREPTVPLVVPTVNTDHLDVIKYQRQ 136
>SPBC1105.08 |||EMP70 family|Schizosaccharomyces pombe|chr
2|||Manual
Length = 629
Score = 23.8 bits (49), Expect = 8.3
Identities = 15/34 (44%), Positives = 18/34 (52%), Gaps = 2/34 (5%)
Frame = -2
Query: 267 IPRSRSAFS--LSKYPSVFEGTLTHFLGFLLELF 172
IPR + S LS +PS G FL L+ELF
Sbjct: 473 IPRQIPSHSIWLSSFPSAIIGGSIPFLVILIELF 506
>SPBC12C2.11 ||SPBC21D10.02|glutamine-fructose-6-phosphate
transaminase |Schizosaccharomyces pombe|chr 2|||Manual
Length = 696
Score = 23.8 bits (49), Expect = 8.3
Identities = 15/44 (34%), Positives = 21/44 (47%)
Frame = +1
Query: 91 IGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKY 222
I HV G+ L + GG RTIE E E + KG++ +
Sbjct: 297 IAHVRDGE-LHVHRLRREGGGSTTRTIETLEMEIASVMKGNYDH 339
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,552,203
Number of Sequences: 5004
Number of extensions: 30503
Number of successful extensions: 139
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 118
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 138
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 112046990
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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