Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0007_I20
         (183 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC144.17c |||6-phosphofructo-2-kinase|Schizosaccharomyces pomb...    24   3.1  
SPBC1711.12 |||serine peptidase |Schizosaccharomyces pombe|chr 2...    23   5.3  
SPAC20G8.10c ||SPAC3A12.01c|beclin family protein|Schizosaccharo...    23   7.0  
SPAC24C9.02c |||cytochrome c1 heme lyase|Schizosaccharomyces pom...    23   7.0  
SPAC4A8.05c |myp2|myo3|myosin II heavy chain |Schizosaccharomyce...    23   7.0  
SPAC16A10.03c |||zinc finger protein Pep5/Vps11 |Schizosaccharom...    22   9.3  
SPAPB21F2.02 |||Dopey family protein|Schizosaccharomyces pombe|c...    22   9.3  

>SPAC144.17c |||6-phosphofructo-2-kinase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 432

 Score = 23.8 bits (49), Expect = 3.1
 Identities = 9/18 (50%), Positives = 14/18 (77%)
 Frame = +3

Query: 63  NLEIIEK*FFRRVDIIYC 116
           +LE+ EK + RR+DI+ C
Sbjct: 196 DLEMAEKEYCRRIDILKC 213


>SPBC1711.12 |||serine peptidase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 683

 Score = 23.0 bits (47), Expect = 5.3
 Identities = 8/26 (30%), Positives = 18/26 (69%)
 Frame = -2

Query: 152 FRNLLINSDTQDTINYIYSSKKLFFN 75
           FR L+ +    +T+N  Y++++L+F+
Sbjct: 553 FRALVCHDGVFNTLNTFYNTEELYFS 578


>SPAC20G8.10c ||SPAC3A12.01c|beclin family
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 464

 Score = 22.6 bits (46), Expect = 7.0
 Identities = 8/27 (29%), Positives = 14/27 (51%)
 Frame = -2

Query: 140 LINSDTQDTINYIYSSKKLFFNYFQIL 60
           L+  +   T+  +   KK++FNY   L
Sbjct: 149 LLTEEMSKTLRALKEEKKMYFNYDNFL 175


>SPAC24C9.02c |||cytochrome c1 heme lyase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 216

 Score = 22.6 bits (46), Expect = 7.0
 Identities = 10/31 (32%), Positives = 18/31 (58%)
 Frame = -2

Query: 167 REI*NFRNLLINSDTQDTINYIYSSKKLFFN 75
           REI     ++  SD+     +IY S+++FF+
Sbjct: 49  REISTIPKVVTESDSGKEEKWIYPSQQMFFD 79


>SPAC4A8.05c |myp2|myo3|myosin II heavy chain |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 2104

 Score = 22.6 bits (46), Expect = 7.0
 Identities = 11/38 (28%), Positives = 18/38 (47%)
 Frame = -2

Query: 170 IREI*NFRNLLINSDTQDTINYIYSSKKLFFNYFQILL 57
           + +I  F     NS  Q  IN+     + FFN++  +L
Sbjct: 456 VLDIAGFEIFTFNSFEQLCINFTNEKLQQFFNHYMFVL 493


>SPAC16A10.03c |||zinc finger protein Pep5/Vps11
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 860

 Score = 22.2 bits (45), Expect = 9.3
 Identities = 11/47 (23%), Positives = 26/47 (55%)
 Frame = -2

Query: 170 IREI*NFRNLLINSDTQDTINYIYSSKKLFFNYFQILLLY*LTINFK 30
           +R++ + +++++      T   +YS KKLF +    +++Y +  N K
Sbjct: 172 VRDLGSRQDIILREKDSITNLILYSPKKLFVSTTTQVMVYKIKNNTK 218


>SPAPB21F2.02 |||Dopey family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1687

 Score = 22.2 bits (45), Expect = 9.3
 Identities = 8/23 (34%), Positives = 13/23 (56%)
 Frame = -2

Query: 146 NLLINSDTQDTINYIYSSKKLFF 78
           N   NSD+ + + +I  S+  FF
Sbjct: 424 NTTENSDSAEAVKFILDSQNFFF 446


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 641,736
Number of Sequences: 5004
Number of extensions: 9111
Number of successful extensions: 22
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21
length of database: 2,362,478
effective HSP length: 41
effective length of database: 2,157,314
effective search space used: 40988966
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)