Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0007_I19
(620 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC11C11.09c |rpl502|rpl5-2, rpl5b|60S ribosomal protein L5|Sch... 209 3e-55
SPAC3H5.12c |rpl501|rpl5-1, rpl5|60S ribosomal protein L5|Schizo... 209 3e-55
SPCC622.11 |||LMBR1-like membrane protein|Schizosaccharomyces po... 27 1.7
SPBC1604.14c |shk1|pak1, orb2|PAK-related kinase Shk1|Schizosacc... 25 6.7
SPBP8B7.30c |thi5||transcription factor Thi5|Schizosaccharomyces... 25 6.7
SPBC23G7.08c |rga7||GTPase activating protein Rga7|Schizosacchar... 25 6.7
SPAC56F8.06c |alg10||dolichyl-phosphate-glucose-glycolipid alpha... 25 6.7
SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyce... 25 8.8
SPBP8B7.09c |||karyopherin|Schizosaccharomyces pombe|chr 2|||Manual 25 8.8
>SPBC11C11.09c |rpl502|rpl5-2, rpl5b|60S ribosomal protein
L5|Schizosaccharomyces pombe|chr 2|||Manual
Length = 294
Score = 209 bits (510), Expect = 3e-55
Identities = 99/202 (49%), Positives = 133/202 (65%)
Frame = -2
Query: 616 PKYRLIVRLSNKDVTCQVAYSRIEGDHIVCAAYSHELPRYGIKVGLTNYAAAYCTGXXXX 437
PKYRL+VR SN+ VTCQ+ SR+ GD+++ A+S ELPRYGIK GL N+ AAY TG
Sbjct: 47 PKYRLVVRFSNRFVTCQIVSSRVNGDYVLAHAHSSELPRYGIKWGLANWTAAYATGLLVA 106
Query: 436 XXXXXXXXLDSLYTGATEVTGDEYNVEPVDNGPGAFRCYLDVGLARTTTGARVFGAMKGA 257
L Y G TE G+ E +++GP F+ +LDVGL RT+TG+RVFGAMKGA
Sbjct: 107 RRALAKVGLADKYEGVTEPEGEFELTEAIEDGPRPFKVFLDVGLKRTSTGSRVFGAMKGA 166
Query: 256 VDGGLNVPHSIKRFPGYDAESKKFNAEVHRAHIFGLHVAEYMRSLEQEDEDSFKRQFGKY 77
DGGL +PHS RFPG+D E+++ + E R +I+G HVAEYM L +DE+ +++QF
Sbjct: 167 SDGGLFIPHSPNRFPGFDIETEELDDETLRKYIYGGHVAEYMEMLIDDDEERYQKQFSGL 226
Query: 76 IKIGVNPDDIETNYKKAHEAIR 11
I G+ D +E Y +A+ IR
Sbjct: 227 IADGIESDQLEDIYAEAYAKIR 248
>SPAC3H5.12c |rpl501|rpl5-1, rpl5|60S ribosomal protein
L5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 294
Score = 209 bits (510), Expect = 3e-55
Identities = 99/202 (49%), Positives = 133/202 (65%)
Frame = -2
Query: 616 PKYRLIVRLSNKDVTCQVAYSRIEGDHIVCAAYSHELPRYGIKVGLTNYAAAYCTGXXXX 437
PKYRL+VR SN+ VTCQ+ SR+ GD+++ A+S ELPRYGIK GL N+ AAY TG
Sbjct: 47 PKYRLVVRFSNRFVTCQIVSSRVNGDYVLAHAHSSELPRYGIKWGLANWTAAYATGLLVA 106
Query: 436 XXXXXXXXLDSLYTGATEVTGDEYNVEPVDNGPGAFRCYLDVGLARTTTGARVFGAMKGA 257
L Y G TE G+ E +++GP F+ +LDVGL RT+TG+RVFGAMKGA
Sbjct: 107 RRALAKVGLADKYEGVTEPEGEFELTEAIEDGPRPFKVFLDVGLKRTSTGSRVFGAMKGA 166
Query: 256 VDGGLNVPHSIKRFPGYDAESKKFNAEVHRAHIFGLHVAEYMRSLEQEDEDSFKRQFGKY 77
DGGL +PHS RFPG+D E+++ + E R +I+G HVAEYM L +DE+ +++QF
Sbjct: 167 SDGGLFIPHSPNRFPGFDIETEELDDETLRKYIYGGHVAEYMEMLIDDDEERYQKQFSGL 226
Query: 76 IKIGVNPDDIETNYKKAHEAIR 11
I G+ D +E Y +A+ IR
Sbjct: 227 IADGIESDQLEDIYAEAYAKIR 248
>SPCC622.11 |||LMBR1-like membrane protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 562
Score = 27.5 bits (58), Expect = 1.7
Identities = 13/33 (39%), Positives = 19/33 (57%)
Frame = +2
Query: 20 LMRFLIICFNIIWIYTDFDILSKLSLERIFVFL 118
L+ + F +IWIY + S +S+ IFVFL
Sbjct: 63 LLLLIPALFTLIWIYKYIEPHSLISIPGIFVFL 95
>SPBC1604.14c |shk1|pak1, orb2|PAK-related kinase
Shk1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 658
Score = 25.4 bits (53), Expect = 6.7
Identities = 16/54 (29%), Positives = 22/54 (40%)
Frame = +3
Query: 261 PFMAPNTRAPVVVRAKPTSK*HLNAPGPLSTGSTLYSSPVTSVAPV*RLSKPSL 422
PF +T P++ + +S HL S+ S LY S P S P L
Sbjct: 217 PFPRESTEKPLLSVSALSSSSHLQPTSATSSSSRLYPSRPAPTPPASSSSSPLL 270
>SPBP8B7.30c |thi5||transcription factor Thi5|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 857
Score = 25.4 bits (53), Expect = 6.7
Identities = 11/19 (57%), Positives = 13/19 (68%)
Frame = +3
Query: 39 FVSISSGFTPILIYFPNCL 95
F+ I SG TPI+ FPN L
Sbjct: 499 FLYIQSGITPIINLFPNGL 517
>SPBC23G7.08c |rga7||GTPase activating protein
Rga7|Schizosaccharomyces pombe|chr 2|||Manual
Length = 695
Score = 25.4 bits (53), Expect = 6.7
Identities = 24/83 (28%), Positives = 38/83 (45%), Gaps = 5/83 (6%)
Frame = +3
Query: 201 ASYPGNLLIECGTFKPPSTA-PFMAPNTRAPVVVRAKPTSK*HLNAPGPLSTGSTLYSSP 377
+++P N + F ST+ P AP + +P+ KP++ N S+ + SSP
Sbjct: 375 STFP-NPSVASPAFPNSSTSNPSTAPASASPLASTLKPSTANDTNGSSSSSSSNPRTSSP 433
Query: 378 VTSVA----PV*RLSKPSLCNNL 434
+ S A PV + S P L L
Sbjct: 434 LASNAENKPPVAQQSPPVLLPTL 456
>SPAC56F8.06c |alg10||dolichyl-phosphate-glucose-glycolipid
alpha-glucosyltransferase Alg10|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 445
Score = 25.4 bits (53), Expect = 6.7
Identities = 16/50 (32%), Positives = 27/50 (54%)
Frame = +2
Query: 44 FNIIWIYTDFDILSKLSLERIFVFLLKATHVLCHM*SKDVCSMYFCIKFL 193
F+ + +Y F +SKL + + FLL +T +L + + V YF + FL
Sbjct: 345 FSYLILYYFFLDISKLQMTSLTFFLLISTTILTLVPAPLVEFRYFLLPFL 394
>SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 604
Score = 25.0 bits (52), Expect = 8.8
Identities = 10/40 (25%), Positives = 23/40 (57%)
Frame = -2
Query: 136 YMRSLEQEDEDSFKRQFGKYIKIGVNPDDIETNYKKAHEA 17
+++ LEQ+ ++ ++GK + I V P+++ + K A
Sbjct: 525 WVQELEQDVKEECDEKYGKVVHIAVVPNELGQIFVKFENA 564
>SPBP8B7.09c |||karyopherin|Schizosaccharomyces pombe|chr 2|||Manual
Length = 978
Score = 25.0 bits (52), Expect = 8.8
Identities = 10/24 (41%), Positives = 17/24 (70%)
Frame = -2
Query: 142 AEYMRSLEQEDEDSFKRQFGKYIK 71
+EY+++L D SFK+ F K+I+
Sbjct: 948 SEYLQALSNLDSRSFKQFFQKFIQ 971
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,697,005
Number of Sequences: 5004
Number of extensions: 56804
Number of successful extensions: 175
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 172
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 175
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 273658928
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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