Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0007_I19
         (620 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z49967-5|CAA90251.1|  293|Caenorhabditis elegans Hypothetical pr...   258   2e-69
Z75530-3|CAA99793.1|  702|Caenorhabditis elegans Hypothetical pr...    33   0.16 
AF067610-1|AAC17538.2|  696|Caenorhabditis elegans Hypothetical ...    31   0.50 
Z81512-3|CAE46668.1| 3175|Caenorhabditis elegans Hypothetical pr...    29   2.7  
Z81512-2|CAB04172.2| 3184|Caenorhabditis elegans Hypothetical pr...    29   2.7  
AF016422-1|AAG24175.1|  335|Caenorhabditis elegans Seven tm rece...    29   2.7  
U41263-13|AAC24428.2| 1844|Caenorhabditis elegans Hypothetical p...    27   8.2  

>Z49967-5|CAA90251.1|  293|Caenorhabditis elegans Hypothetical
           protein F54C9.5 protein.
          Length = 293

 Score =  258 bits (632), Expect = 2e-69
 Identities = 121/205 (59%), Positives = 150/205 (73%), Gaps = 1/205 (0%)
 Frame = -2

Query: 619 TPKYRLIVRLSNKDVTCQVAYSRIEGDHIVCAAYSHELPRYGIKVGLTNYAAAYCTGXXX 440
           TPKYRLIVR++NKDV  Q+AYS+IEGD +V +AYSHELPRYG+KVGLTNYAAAY TG   
Sbjct: 46  TPKYRLIVRITNKDVVAQLAYSKIEGDVVVASAYSHELPRYGLKVGLTNYAAAYATGLLL 105

Query: 439 XXXXXXXXXLDSLYTGATEVTGDEYNVEPV-DNGPGAFRCYLDVGLARTTTGARVFGAMK 263
                    LDS Y G  E+TG++YNVE   D  P  F+  LD+GLARTTTG+++F  MK
Sbjct: 106 ARRHLKTIGLDSTYKGHEELTGEDYNVEEEGDRAP--FKAVLDIGLARTTTGSKIFAVMK 163

Query: 262 GAVDGGLNVPHSIKRFPGYDAESKKFNAEVHRAHIFGLHVAEYMRSLEQEDEDSFKRQFG 83
           G  DGG+NVPHS  RF G+D ESK++NAE HR  I G HVA+YM  L++EDED +KRQF 
Sbjct: 164 GVADGGINVPHSESRFFGFDQESKEYNAEAHRDRILGKHVADYMTYLKEEDEDRYKRQFS 223

Query: 82  KYIKIGVNPDDIETNYKKAHEAIRA 8
           K++  G+N D++   Y+K H AIRA
Sbjct: 224 KFLAAGLNADNLVATYQKVHSAIRA 248


>Z75530-3|CAA99793.1|  702|Caenorhabditis elegans Hypothetical
           protein C47E8.5 protein.
          Length = 702

 Score = 33.1 bits (72), Expect = 0.16
 Identities = 17/38 (44%), Positives = 26/38 (68%), Gaps = 3/38 (7%)
 Frame = -2

Query: 115 EDEDSFKR---QFGKYIKIGVNPDDIETNYKKAHEAIR 11
           ED+D+FK+   QFGK +K+G++ D   TN KK  + +R
Sbjct: 400 EDKDNFKKFYEQFGKNLKLGIHED--STNRKKLSDFLR 435


>AF067610-1|AAC17538.2|  696|Caenorhabditis elegans Hypothetical
           protein F41A4.1 protein.
          Length = 696

 Score = 31.5 bits (68), Expect = 0.50
 Identities = 17/61 (27%), Positives = 27/61 (44%), Gaps = 1/61 (1%)
 Frame = -2

Query: 364 NVEPVDNGPGAFRCYL-DVGLARTTTGARVFGAMKGAVDGGLNVPHSIKRFPGYDAESKK 188
           N EP++   G F C+L       TT+G+R  G      +  L    + ++FPG    +  
Sbjct: 68  NAEPIEKKNGGFNCHLHSKSPVLTTSGSRTVGTKTCLENKCLKRSFAFEKFPGRSLVNSS 127

Query: 187 F 185
           F
Sbjct: 128 F 128


>Z81512-3|CAE46668.1| 3175|Caenorhabditis elegans Hypothetical
           protein F25C8.3b protein.
          Length = 3175

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 15/39 (38%), Positives = 22/39 (56%), Gaps = 4/39 (10%)
 Frame = -3

Query: 546 RVITLSVL----PTLMNSHAMVSRWV*LTMLLPTALVCC 442
           RV+  ++L    P+L N+ A VSRW  +   LP  + CC
Sbjct: 77  RVVVQNILHGLSPSLSNALASVSRWKLVRAALPHVIQCC 115


>Z81512-2|CAB04172.2| 3184|Caenorhabditis elegans Hypothetical
           protein F25C8.3a protein.
          Length = 3184

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 15/39 (38%), Positives = 22/39 (56%), Gaps = 4/39 (10%)
 Frame = -3

Query: 546 RVITLSVL----PTLMNSHAMVSRWV*LTMLLPTALVCC 442
           RV+  ++L    P+L N+ A VSRW  +   LP  + CC
Sbjct: 77  RVVVQNILHGLSPSLSNALASVSRWKLVRAALPHVIQCC 115


>AF016422-1|AAG24175.1|  335|Caenorhabditis elegans Seven tm
           receptor protein 238 protein.
          Length = 335

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 17/61 (27%), Positives = 33/61 (54%), Gaps = 4/61 (6%)
 Frame = +2

Query: 20  LMRFLIICFNII-WIYTDFDIL---SKLSLERIFVFLLKATHVLCHM*SKDVCSMYFCIK 187
           L ++L+I   +   +++  DIL      S + IF+ + +A  ++    +K+V SM FC+ 
Sbjct: 36  LYKYLMIYIAVYELLFSTLDILLAPDAYSYDTIFIMITRADKLILPPCTKEVASMMFCVL 95

Query: 188 F 190
           F
Sbjct: 96  F 96


>U41263-13|AAC24428.2| 1844|Caenorhabditis elegans Hypothetical
           protein T19D12.1 protein.
          Length = 1844

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 18/59 (30%), Positives = 26/59 (44%), Gaps = 2/59 (3%)
 Frame = +3

Query: 249 PSTAPFMAPNTRAPVVVRAKPTSK*HLNAPGPLSTGSTLYSSP--VTSVAPV*RLSKPS 419
           PST       +  P    + PT+        P +TG+T  +SP  +TS AP  +   PS
Sbjct: 485 PSTQGVPTSTSNQPTPSTSNPTTPKSTVTASPSTTGATSTASPSTITSSAPTSQSHSPS 543


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,073,816
Number of Sequences: 27780
Number of extensions: 328570
Number of successful extensions: 982
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 939
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 981
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1353389824
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)