Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0007_I17
(544 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_06_0204 + 21191611-21192807 30 1.4
01_06_0445 - 29441472-29442152,29442244-29442357,29442959-294431... 30 1.4
10_07_0065 - 12527642-12528178,12531443-12531718 29 1.8
01_03_0256 + 14288885-14288936,14289362-14291335,14291648-142916... 29 2.4
06_03_0570 - 22363197-22363588,22363755-22366782 28 4.2
02_02_0442 - 10318576-10319109 28 4.2
09_04_0109 - 14674980-14675004,14675861-14676468 28 5.5
01_02_0050 + 10649275-10649655,10649807-10649921,10651003-106510... 28 5.5
12_01_0963 + 9608858-9609538 27 7.3
08_01_0056 + 379270-379803 27 7.3
06_01_1001 + 7783072-7783493,7783530-7784212,7784582-7784592 27 7.3
03_02_0096 - 5600815-5601348 27 7.3
11_05_0089 + 18975637-18977439 27 9.7
02_02_0648 - 12619468-12619874,12621432-12621512,12621607-126217... 27 9.7
>11_06_0204 + 21191611-21192807
Length = 398
Score = 29.9 bits (64), Expect = 1.4
Identities = 19/68 (27%), Positives = 28/68 (41%)
Frame = +3
Query: 267 SASPVCDTDGLTHANPCHLMMNGRKLAYWGECLSGCSATGTVCGVNGVTYISECAAWAEH 446
SAS +C DG H + CH L +TG C + Y SE AW +
Sbjct: 161 SASVLCAADGCDHRH-CH----------GAPFLVAVVSTGRYCNTSAAIYSSETGAWGDA 209
Query: 447 VSVDYSGP 470
++++ P
Sbjct: 210 IALEREHP 217
>01_06_0445 -
29441472-29442152,29442244-29442357,29442959-29443186,
29443284-29443586
Length = 441
Score = 29.9 bits (64), Expect = 1.4
Identities = 19/62 (30%), Positives = 28/62 (45%)
Frame = -3
Query: 413 SDSVDTAHCASSRASAETFAPVREFSAVHHQVAGVGVREPVRITHRGRGLRVAPGIVYAS 234
S++ +A SS +A AP R+F + + A V ++ R R LR GIV
Sbjct: 57 SETSSSADALSSVVAAVVRAPPRDFRLIRQEWAAVRIQTAFRAFLARRALRALRGIVRLQ 116
Query: 233 VL 228
L
Sbjct: 117 AL 118
>10_07_0065 - 12527642-12528178,12531443-12531718
Length = 270
Score = 29.5 bits (63), Expect = 1.8
Identities = 15/29 (51%), Positives = 15/29 (51%)
Frame = +2
Query: 98 CGCDGRGDRFRSACGVRGRRVSAPARVCA 184
CG GR RF ACGV R V A A A
Sbjct: 8 CGGGGRSWRFAVACGVLSRCVKAEAAAAA 36
>01_03_0256 + 14288885-14288936,14289362-14291335,14291648-14291673,
14291855-14292025,14292560-14292647,14292711-14292802,
14292920-14293384,14293860-14294633,14294890-14295087,
14296940-14297374,14297455-14297688,14298042-14298323
Length = 1596
Score = 29.1 bits (62), Expect = 2.4
Identities = 14/43 (32%), Positives = 24/43 (55%)
Frame = +3
Query: 327 MNGRKLAYWGECLSGCSATGTVCGVNGVTYISECAAWAEHVSV 455
+NG + +W C + S TG VC V ++ S +A +E+ S+
Sbjct: 1038 INGHAIDFWNICENDESCTGDVCEVRALS-SSHASATSENSSI 1079
>06_03_0570 - 22363197-22363588,22363755-22366782
Length = 1139
Score = 28.3 bits (60), Expect = 4.2
Identities = 12/26 (46%), Positives = 13/26 (50%)
Frame = +3
Query: 321 LMMNGRKLAYWGECLSGCSATGTVCG 398
L N R LA W E L C+ G CG
Sbjct: 52 LSNNARSLASWNESLQFCTWPGITCG 77
>02_02_0442 - 10318576-10319109
Length = 177
Score = 28.3 bits (60), Expect = 4.2
Identities = 21/46 (45%), Positives = 24/46 (52%)
Frame = -2
Query: 243 LCKRVADMMFASARGRR*VRAHTRAGADTRRPRTPHALRNLSPRPS 106
LC + AD + ASAR VR RA RRP P +LSP PS
Sbjct: 81 LCAK-ADTIAASARLGHPVRRRRRAHRRRRRPSPP---PSLSPEPS 122
>09_04_0109 - 14674980-14675004,14675861-14676468
Length = 210
Score = 27.9 bits (59), Expect = 5.5
Identities = 15/30 (50%), Positives = 18/30 (60%), Gaps = 3/30 (10%)
Frame = -2
Query: 177 TRAGADTRRPRTPHALRNL---SPRPSHPH 97
T A + T RPR+P L+N SP PSH H
Sbjct: 72 TVAASFTHRPRSPPCLQNSKSGSPPPSHLH 101
>01_02_0050 +
10649275-10649655,10649807-10649921,10651003-10651009,
10651035-10651216,10651318-10651530,10651621-10651688,
10651772-10651846,10651961-10652068,10652413-10652530,
10652652-10652793,10653084-10653140,10653281-10653701,
10654064-10654528
Length = 783
Score = 27.9 bits (59), Expect = 5.5
Identities = 12/31 (38%), Positives = 18/31 (58%)
Frame = +3
Query: 42 HLPVRTPATLYPNACLAKCAGATDAEIDFGV 134
+L + TP+ P+ C + G + EIDFGV
Sbjct: 22 NLFLATPSNASPSKCSRRELGRAEGEIDFGV 52
>12_01_0963 + 9608858-9609538
Length = 226
Score = 27.5 bits (58), Expect = 7.3
Identities = 21/46 (45%), Positives = 23/46 (50%)
Frame = -2
Query: 243 LCKRVADMMFASARGRR*VRAHTRAGADTRRPRTPHALRNLSPRPS 106
LC + AD + ASAR VR RA RRP P LSP PS
Sbjct: 130 LCAK-ADTIAASARLGHPVRRRRRAHRRRRRPSPPPP---LSPEPS 171
>08_01_0056 + 379270-379803
Length = 177
Score = 27.5 bits (58), Expect = 7.3
Identities = 21/46 (45%), Positives = 23/46 (50%)
Frame = -2
Query: 243 LCKRVADMMFASARGRR*VRAHTRAGADTRRPRTPHALRNLSPRPS 106
LC + AD + ASAR VR RA RRP P LSP PS
Sbjct: 81 LCAK-ADTIAASARLGHPVRRRRRAHRRRRRPSPPPP---LSPEPS 122
>06_01_1001 + 7783072-7783493,7783530-7784212,7784582-7784592
Length = 371
Score = 27.5 bits (58), Expect = 7.3
Identities = 23/71 (32%), Positives = 31/71 (43%)
Frame = +3
Query: 249 TGCNSQSASPVCDTDGLTHANPCHLMMNGRKLAYWGECLSGCSATGTVCGVNGVTYISEC 428
TG A+ +C DG H + CH GR AY L G G + Y SE
Sbjct: 135 TGMERPLAAVLCAVDGCGH-HDCH----GR--AY-RVALVGTDVAGGA--THAAVYSSET 184
Query: 429 AAWAEHVSVDY 461
AW++ S+D+
Sbjct: 185 YAWSDPTSIDH 195
>03_02_0096 - 5600815-5601348
Length = 177
Score = 27.5 bits (58), Expect = 7.3
Identities = 21/46 (45%), Positives = 23/46 (50%)
Frame = -2
Query: 243 LCKRVADMMFASARGRR*VRAHTRAGADTRRPRTPHALRNLSPRPS 106
LC + AD + ASAR VR RA RRP P LSP PS
Sbjct: 81 LCAK-ADTIAASARLGHPVRRRRRAHRRRRRPSPPPP---LSPEPS 122
>11_05_0089 + 18975637-18977439
Length = 600
Score = 27.1 bits (57), Expect = 9.7
Identities = 16/32 (50%), Positives = 19/32 (59%), Gaps = 2/32 (6%)
Frame = +2
Query: 98 CGCDGRGDRFRS-ACGVRGRRVS-APARVCAR 187
CGC G GDR S + GV G +S PA+ AR
Sbjct: 11 CGCGGDGDRLSSLSDGVIGHILSFLPAKEAAR 42
>02_02_0648 -
12619468-12619874,12621432-12621512,12621607-12621716,
12621896-12622164,12622440-12622567,12622637-12622699,
12623196-12623493
Length = 451
Score = 27.1 bits (57), Expect = 9.7
Identities = 10/26 (38%), Positives = 13/26 (50%)
Frame = +3
Query: 21 PCNCPPHHLPVRTPATLYPNACLAKC 98
PC C H P A L+P C+ +C
Sbjct: 378 PCRCRGHSTPSTARAALWPR-CMTRC 402
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,310,620
Number of Sequences: 37544
Number of extensions: 310523
Number of successful extensions: 1138
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1118
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1138
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1210221432
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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