Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0007_I16
         (613 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC328.10c |rps502|rps5-2|40S ribosomal protein S5|Schizosaccha...   197   1e-51
SPAC8C9.08 |rps5||40S ribosomal protein S5|Schizosaccharomyces p...   197   1e-51
SPAC16E8.10c |||mitochondrial ribosomal protein subunit S7|Schiz...    40   2e-04
SPBC2G5.03 |||ATP binding protein|Schizosaccharomyces pombe|chr ...    27   1.6  
SPAC27D7.02c |||GRIP domain protein|Schizosaccharomyces pombe|ch...    25   8.6  

>SPAC328.10c |rps502|rps5-2|40S ribosomal protein
           S5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 203

 Score =  197 bits (480), Expect = 1e-51
 Identities = 97/119 (81%), Positives = 108/119 (90%)
 Frame = +1

Query: 10  KLMAVRIVKHAFEIIHLLTGENPLQVLVTAIINSGPREDSTRIGRAGTVRRQAVDVSPLR 189
           KL+A RIVKHAFEII LLT +NPLQVLV A+   GPREDSTRIG AGTVRRQAVDVSPLR
Sbjct: 85  KLLATRIVKHAFEIIALLTDQNPLQVLVDAVAACGPREDSTRIGSAGTVRRQAVDVSPLR 144

Query: 190 RVNQAIWLLCTGAREAAFRNIKTIAECVADELINAAKGSSNSYAIKKKDELERVAKSNR 366
           RVNQA+ L+  GAREAAFRN+K+I+EC+A+E+INAAKGSSNSYAIKKKDELERVAKSNR
Sbjct: 145 RVNQALALITIGAREAAFRNVKSISECLAEEIINAAKGSSNSYAIKKKDELERVAKSNR 203


>SPAC8C9.08 |rps5||40S ribosomal protein S5|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 203

 Score =  197 bits (480), Expect = 1e-51
 Identities = 97/119 (81%), Positives = 108/119 (90%)
 Frame = +1

Query: 10  KLMAVRIVKHAFEIIHLLTGENPLQVLVTAIINSGPREDSTRIGRAGTVRRQAVDVSPLR 189
           KL+A RIVKHAFEII LLT +NPLQVLV A+   GPREDSTRIG AGTVRRQAVDVSPLR
Sbjct: 85  KLLATRIVKHAFEIIALLTDQNPLQVLVDAVAACGPREDSTRIGSAGTVRRQAVDVSPLR 144

Query: 190 RVNQAIWLLCTGAREAAFRNIKTIAECVADELINAAKGSSNSYAIKKKDELERVAKSNR 366
           RVNQA+ L+  GAREAAFRN+K+I+EC+A+E+INAAKGSSNSYAIKKKDELERVAKSNR
Sbjct: 145 RVNQALALITIGAREAAFRNVKSISECLAEEIINAAKGSSNSYAIKKKDELERVAKSNR 203


>SPAC16E8.10c |||mitochondrial ribosomal protein subunit
           S7|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 259

 Score = 40.3 bits (90), Expect = 2e-04
 Identities = 36/120 (30%), Positives = 52/120 (43%), Gaps = 1/120 (0%)
 Frame = +1

Query: 10  KLMAVRIVKHAFEIIHLLTGENPLQVLVTAIINSGPREDSTRIGRAGTVRRQAVDVSPLR 189
           K  A +IV  A  II   TGENP+ VL  AI    P        R        + +   +
Sbjct: 139 KAKAEKIVATALSIIQKETGENPIDVLKQAIAEISPLMKLVSAKRFNKSVEFPMPLKERQ 198

Query: 190 RVNQAI-WLLCTGAREAAFRNIKTIAECVADELINAAKGSSNSYAIKKKDELERVAKSNR 366
           R   A+ W+L     E    + K +++ +  E+I     +SN +  KKKD L R+   NR
Sbjct: 199 RRRIALQWIL----GECKSSSPKRLSDRIVKEIIAIRSKTSNCF--KKKDHLHRMCLVNR 252


>SPBC2G5.03 |||ATP binding protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 335

 Score = 27.5 bits (58), Expect = 1.6
 Identities = 17/51 (33%), Positives = 28/51 (54%)
 Frame = +1

Query: 40  AFEIIHLLTGENPLQVLVTAIINSGPREDSTRIGRAGTVRRQAVDVSPLRR 192
           + +I HL+TG N   +  T ++N   R D  R+ R+  +  Q+ D SP +R
Sbjct: 159 SLDIHHLVTGHNADDIAETILMNL-LRGDVARLPRSTEITTQS-DSSPTKR 207


>SPAC27D7.02c |||GRIP domain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 750

 Score = 25.0 bits (52), Expect = 8.6
 Identities = 10/23 (43%), Positives = 16/23 (69%)
 Frame = +1

Query: 280 ELINAAKGSSNSYAIKKKDELER 348
           E +N+   + NS  ++KKDELE+
Sbjct: 133 EKLNSEISNQNSLILQKKDELEK 155


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,044,752
Number of Sequences: 5004
Number of extensions: 36070
Number of successful extensions: 92
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 91
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 92
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 267622334
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)