Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0007_I16
         (613 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_04_0317 - 16328558-16328612,16328698-16328901,16329794-163300...   210   7e-55
01_01_0006 + 26221-26292,26370-26641,27090-27293,27365-27419          210   7e-55
01_07_0219 + 42079095-42079399,42079584-42079728,42081695-420817...    31   0.54 
07_03_0100 + 13389899-13390219,13390723-13390841,13391220-133913...    29   2.9  
01_06_1495 + 37769982-37771496                                         29   2.9  
07_01_0705 - 5313315-5315219,5315858-5315860                           27   8.9  

>11_04_0317 -
           16328558-16328612,16328698-16328901,16329794-16330065,
           16330152-16330220
          Length = 199

 Score =  210 bits (513), Expect = 7e-55
 Identities = 102/119 (85%), Positives = 112/119 (94%)
 Frame = +1

Query: 10  KLMAVRIVKHAFEIIHLLTGENPLQVLVTAIINSGPREDSTRIGRAGTVRRQAVDVSPLR 189
           K+MAVRIVKHA EIIHLLT  NP+QV+V AIINSGPRED+TRIG AG VRRQAVD+SPLR
Sbjct: 81  KIMAVRIVKHAMEIIHLLTDANPIQVIVDAIINSGPREDATRIGSAGAVRRQAVDISPLR 140

Query: 190 RVNQAIWLLCTGAREAAFRNIKTIAECVADELINAAKGSSNSYAIKKKDELERVAKSNR 366
           RVNQAI+LL TGARE+AFRNIKTIAEC+ADELINAAKGSSNSYAIKKKDE+ERVAK+NR
Sbjct: 141 RVNQAIYLLTTGARESAFRNIKTIAECLADELINAAKGSSNSYAIKKKDEIERVAKANR 199


>01_01_0006 + 26221-26292,26370-26641,27090-27293,27365-27419
          Length = 200

 Score =  210 bits (513), Expect = 7e-55
 Identities = 102/119 (85%), Positives = 112/119 (94%)
 Frame = +1

Query: 10  KLMAVRIVKHAFEIIHLLTGENPLQVLVTAIINSGPREDSTRIGRAGTVRRQAVDVSPLR 189
           K+MAVRIVKHA EIIHLLT  NP+QV+V AIINSGPRED+TRIG AG VRRQAVD+SPLR
Sbjct: 82  KIMAVRIVKHAMEIIHLLTDANPIQVIVDAIINSGPREDATRIGSAGAVRRQAVDISPLR 141

Query: 190 RVNQAIWLLCTGAREAAFRNIKTIAECVADELINAAKGSSNSYAIKKKDELERVAKSNR 366
           RVNQAI+LL TGARE+AFRNIKTIAEC+ADELINAAKGSSNSYAIKKKDE+ERVAK+NR
Sbjct: 142 RVNQAIYLLTTGARESAFRNIKTIAECLADELINAAKGSSNSYAIKKKDEIERVAKANR 200


>01_07_0219 +
           42079095-42079399,42079584-42079728,42081695-42081739,
           42082150-42082265,42082913-42083012,42083103-42083138,
           42083301-42083351,42083431-42083565
          Length = 310

 Score = 31.5 bits (68), Expect = 0.54
 Identities = 19/53 (35%), Positives = 26/53 (49%)
 Frame = +1

Query: 157 RRQAVDVSPLRRVNQAIWLLCTGAREAAFRNIKTIAECVADELINAAKGSSNS 315
           RR+AV  + +RR+  A WL   GAR A  R         A E++ +A G   S
Sbjct: 9   RREAVRAAHVRRIEAAAWL---GARRATRREDAAARCAAAGEVVGSAAGVGRS 58


>07_03_0100 +
           13389899-13390219,13390723-13390841,13391220-13391315,
           13391481-13391553,13392055-13392123
          Length = 225

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 15/46 (32%), Positives = 24/46 (52%)
 Frame = -3

Query: 245 LNAASRAPVHNNQIAWLTRRNGDTSTA*RRTVPARPILVESSLGPE 108
           L+A+SR P   ++I    RR G + +  RR+ P +P     +  PE
Sbjct: 49  LHASSRVPAARHRIVCPCRRRGGSPSLTRRSSPEKPGPFSQTRSPE 94


>01_06_1495 + 37769982-37771496
          Length = 504

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 13/44 (29%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
 Frame = +2

Query: 116 QEKTPPGSVVLVQFDVKPSMCPH-YVVLTRLSGYCAQEHVRLHL 244
           +E  PPGS V++Q + +  + PH +  L    G+    ++R+H+
Sbjct: 240 RENLPPGSYVVLQLEKEEILAPHTHFCLICGKGFKRDANLRMHM 283


>07_01_0705 - 5313315-5315219,5315858-5315860
          Length = 635

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 14/49 (28%), Positives = 22/49 (44%)
 Frame = -2

Query: 147 STTDPGGVFSWTRINNSSHQNLQRVFTRQQVNNFKGMFNDTYSHKFPSC 1
           S T PGGV  WTR+ NS+   ++   T   +     +  +   H   +C
Sbjct: 96  SYTSPGGVEVWTRVCNSTGSLMENNPTLDGMRQILTLSYNHLPHHLKAC 144


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,125,984
Number of Sequences: 37544
Number of extensions: 237219
Number of successful extensions: 593
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 584
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 593
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1466594128
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)