Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0007_I12
         (446 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC922.05c |||membrane transporter |Schizosaccharomyces pombe|c...    29   0.43 
SPCC790.02 |pep3|vps18, vps18|ubiquitin-protein ligase E3 |Schiz...    27   0.99 
SPBC887.19 |rft1||human RFT1 ortholog |Schizosaccharomyces pombe...    27   1.7  
SPAC19E9.01c |nup40||nucleoporin Nup40|Schizosaccharomyces pombe...    25   5.3  
SPAC3H1.11 |hsr1||transcription factor Hsr1|Schizosaccharomyces ...    25   5.3  
SPBC14C8.10 |mrpl24||mitochondrial ribosomal protein subunit L28...    25   5.3  
SPBC14F5.06 |||iron-sulfur protein|Schizosaccharomyces pombe|chr...    25   7.0  
SPBC15D4.04 |gpt2|gpt, alg7|UDP-N-acetylglucosamine--dolichyl-ph...    25   7.0  
SPAC3H1.12c |snt2||Lid2 complex subunit Snt2 |Schizosaccharomyce...    24   9.3  

>SPAC922.05c |||membrane transporter |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 504

 Score = 28.7 bits (61), Expect = 0.43
 Identities = 11/33 (33%), Positives = 20/33 (60%)
 Frame = +3

Query: 180 EYKDYKYAPLKQSDFDKSKPKIGHYTQMAWSES 278
           EY + + APL QS +   +P+IG +  +A+  +
Sbjct: 27  EYGEVETAPLSQSSWIYRRPRIGRFKSLAYGSA 59


>SPCC790.02 |pep3|vps18, vps18|ubiquitin-protein ligase E3
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 900

 Score = 27.5 bits (58), Expect = 0.99
 Identities = 15/44 (34%), Positives = 25/44 (56%)
 Frame = +3

Query: 102 ENLYWYSTTDSTYKLNVDNAMESWFNEYKDYKYAPLKQSDFDKS 233
           +N YW  TTDS ++L V+       NE ++     L++ DF+K+
Sbjct: 356 KNTYWLYTTDSLHELVVN-------NETREASLVFLEKGDFEKA 392


>SPBC887.19 |rft1||human RFT1 ortholog |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 527

 Score = 26.6 bits (56), Expect = 1.7
 Identities = 13/39 (33%), Positives = 22/39 (56%)
 Frame = -2

Query: 229 LSKSLCFKGAXXXXXXXLNQLSIALSTFSLYVLSVVEYQ 113
           L  S+ F+G+       LNQL+I L++ S Y  S + ++
Sbjct: 15  LRSSIFFQGSSRILTFFLNQLTIRLTSPSAYAFSSIHFE 53


>SPAC19E9.01c |nup40||nucleoporin Nup40|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 371

 Score = 25.0 bits (52), Expect = 5.3
 Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
 Frame = +3

Query: 222 FDKSK-PKIGHYTQMAWSESTHVGCAVLQTQDRQWNKFYVVCNYGPA 359
           F  SK P  G++ Q+ ++E +    AVL       + F V C Y PA
Sbjct: 208 FTPSKGPISGNWLQLTYAEPSSAAKAVLSNGMLINDSFMVGCIYSPA 254


>SPAC3H1.11 |hsr1||transcription factor Hsr1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 582

 Score = 25.0 bits (52), Expect = 5.3
 Identities = 15/58 (25%), Positives = 25/58 (43%)
 Frame = +3

Query: 63  PGQDFGIGKIQTGENLYWYSTTDSTYKLNVDNAMESWFNEYKDYKYAPLKQSDFDKSK 236
           P Q+ GI K +  +    Y     TY   VD++   W+     +  AP + S  + S+
Sbjct: 146 PPQNPGISKSRIAQ----YHQPSQTYDDTVDSSFYDWYKAGAQHNLAPPQSSHTEASQ 199


>SPBC14C8.10 |mrpl24||mitochondrial ribosomal protein subunit
           L28|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 176

 Score = 25.0 bits (52), Expect = 5.3
 Identities = 10/37 (27%), Positives = 17/37 (45%)
 Frame = +3

Query: 174 FNEYKDYKYAPLKQSDFDKSKPKIGHYTQMAWSESTH 284
           F++++   Y   K    +   PK GH T+  W  + H
Sbjct: 24  FSKFQQNLYGGSKTEAGNNKIPKFGHKTRRVWIPNGH 60


>SPBC14F5.06 |||iron-sulfur protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 593

 Score = 24.6 bits (51), Expect = 7.0
 Identities = 11/35 (31%), Positives = 16/35 (45%)
 Frame = -3

Query: 444 RDVCSRSCRILIVRWVCLLCRETDRCNYQPARSCI 340
           R  C RSC ++    +C+    TDR  +     CI
Sbjct: 22  RQECRRSCPVVRTGKLCIEVNPTDRIAFISETLCI 56


>SPBC15D4.04 |gpt2|gpt,
           alg7|UDP-N-acetylglucosamine--dolichyl-phosphateN-
           acetylglucosaminephosphotransferase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 446

 Score = 24.6 bits (51), Expect = 7.0
 Identities = 9/25 (36%), Positives = 16/25 (64%)
 Frame = -3

Query: 255 CNGLFWV*TCRSHSVSREHICNLYI 181
           CN LF+V + ++    R H+ +LY+
Sbjct: 237 CNDLFYVLSPKNKDALRAHLLSLYL 261


>SPAC3H1.12c |snt2||Lid2 complex subunit Snt2 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1131

 Score = 24.2 bits (50), Expect = 9.3
 Identities = 7/24 (29%), Positives = 10/24 (41%)
 Frame = -3

Query: 411 IVRWVCLLCRETDRCNYQPARSCI 340
           ++ W CL CR  D         C+
Sbjct: 885 VLSWACLSCRSNDNLGQNNDNHCV 908


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,860,364
Number of Sequences: 5004
Number of extensions: 39719
Number of successful extensions: 105
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 102
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 105
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 164204010
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)