Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0007_I12
         (446 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholi...    28   0.053
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    23   1.5  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    23   1.5  
AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein...    22   3.5  
AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase pro...    22   3.5  
DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like recept...    21   8.1  

>DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholine
           receptor beta2subunit protein.
          Length = 427

 Score = 27.9 bits (59), Expect = 0.053
 Identities = 16/58 (27%), Positives = 28/58 (48%), Gaps = 3/58 (5%)
 Frame = -2

Query: 235 LDLSKSLCFKGAXXXXXXXLNQLSIALSTFSLYVLSVVEYQYKF---SPVWIFPIPKS 71
           LD+   + F G          + S+AL+ FSL + S++ Y  +    +P WI  + +S
Sbjct: 290 LDVQWRIPFNGIQMPNLMVFYEKSLALAAFSLMLTSILRYLQELHVDAPTWISSVTES 347


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 23.0 bits (47), Expect = 1.5
 Identities = 7/13 (53%), Positives = 10/13 (76%)
 Frame = -3

Query: 279 WTQTMPSVCNGLF 241
           WT T P++C G+F
Sbjct: 495 WTITTPAICVGVF 507


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 23.0 bits (47), Expect = 1.5
 Identities = 7/13 (53%), Positives = 10/13 (76%)
 Frame = -3

Query: 279 WTQTMPSVCNGLF 241
           WT T P++C G+F
Sbjct: 548 WTITTPAICVGVF 560


>AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein
           protein.
          Length = 411

 Score = 21.8 bits (44), Expect = 3.5
 Identities = 13/25 (52%), Positives = 15/25 (60%)
 Frame = -2

Query: 175 NQLSIALSTFSLYVLSVVEYQYKFS 101
           N LSI  ST ++YVLS    Q  FS
Sbjct: 349 NDLSIDRSTNTMYVLSDNFQQLLFS 373


>AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase
           protein.
          Length = 588

 Score = 21.8 bits (44), Expect = 3.5
 Identities = 10/34 (29%), Positives = 19/34 (55%)
 Frame = +3

Query: 138 YKLNVDNAMESWFNEYKDYKYAPLKQSDFDKSKP 239
           ++++++N   +  N+YKDY Y  +     DK  P
Sbjct: 130 FQMSINNTNNNNTNKYKDY-YIWVDPVKDDKGNP 162


>DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like receptor
           2 protein.
          Length = 581

 Score = 20.6 bits (41), Expect = 8.1
 Identities = 7/16 (43%), Positives = 11/16 (68%)
 Frame = -3

Query: 432 SRSCRILIVRWVCLLC 385
           SR+ + +IV W+  LC
Sbjct: 169 SRAVKFIIVIWLLALC 184


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 126,685
Number of Sequences: 438
Number of extensions: 2840
Number of successful extensions: 10
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 11697255
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)