Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0007_I10
(544 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC29A3.03c |||ubiquitin-protein ligase E3 |Schizosaccharomyces... 29 0.44
SPAC25B8.11 |||transcription factor|Schizosaccharomyces pombe|ch... 28 0.77
SPBC1773.07c |sbp1|yrb1|Ran GTPase binding protein Sbp1|Schizosa... 27 1.4
SPBC336.07 |sfc3||transcription factor TFIIIC complex subunit Sf... 27 1.4
SPCC297.05 |||diacylglycerol binding protein |Schizosaccharomyce... 27 2.4
SPAC23D3.14c |aah2||alpha-amylase homolog Aah2|Schizosaccharomyc... 26 3.1
SPBC16D10.10 |||tRNA specific adenosine deaminase subunit Tad2 |... 26 4.1
SPCC645.05c |myo2|rng5|myosin II heavy chain|Schizosaccharomyces... 26 4.1
SPBC14F5.07 |||ER-localized ubiquitin ligase |Schizosaccharomyce... 25 5.5
SPAC1D4.04 |cct2||chaperonin-containing T-complex beta subunit C... 25 5.5
SPBC1539.05 |cog3||Golgi transport complex subunit Cog3 |Schizos... 25 5.5
SPCC737.07c |||DNA polymerase alpha-associated DNA helicase A |S... 25 7.2
SPAC22G7.10 |||mRNA cleavage and polyadenylation specificity fac... 25 7.2
SPBPB10D8.04c |||membrane transporter |Schizosaccharomyces pombe... 25 7.2
SPBPB10D8.05c |||membrane transporter |Schizosaccharomyces pombe... 25 7.2
SPBPB10D8.06c |||membrane transporter |Schizosaccharomyces pombe... 25 7.2
SPAC23D3.06c |nup146||nucleoporin Nup146|Schizosaccharomyces pom... 25 7.2
SPBPB10D8.07c |||membrane transporter |Schizosaccharomyces pombe... 25 7.2
SPCC1020.05 |||phosphoprotein phosphatase |Schizosaccharomyces p... 25 7.2
SPAC29E6.06c ||SPAC30.10c|cysteine-tRNA ligase |Schizosaccharomy... 25 9.5
SPAC23C4.10 |sec2||guanyl-nucleotide exchange factor Sec2 |Schiz... 25 9.5
SPCC1919.14c |bdp1||transcription factor TFIIIB complex subunit ... 25 9.5
SPBC23E6.09 |ssn6||transcriptional corepressor Ssn6|Schizosaccha... 25 9.5
SPAC10F6.09c |psm3|smc3|mitotic cohesin complex subunit Psm3|Sch... 25 9.5
>SPBC29A3.03c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 398
Score = 29.1 bits (62), Expect = 0.44
Identities = 21/58 (36%), Positives = 35/58 (60%)
Frame = +2
Query: 110 APSLKDLPKVANDLKSQLEGFNTSCLRDVDTNEKIVLPSAEDVATEKTQKSLFDGIEK 283
AP K L K+ N+L+S L+ SCL+D T+ K ++ +EKTQ+ +FD +++
Sbjct: 13 APGNKCLAKL-NELESILKDAKKSCLKDPTTSMKELV-----ACSEKTQQ-VFDDLKR 63
>SPAC25B8.11 |||transcription factor|Schizosaccharomyces pombe|chr
1|||Manual
Length = 654
Score = 28.3 bits (60), Expect = 0.77
Identities = 15/40 (37%), Positives = 22/40 (55%)
Frame = +2
Query: 329 PLPDKDAIEAEKEKNKFLNGIESFDPTKLKHTETCEKNPL 448
P D D I+ +E F NG+ SFD +K+ T K+P+
Sbjct: 159 PTCDSD-IDLIREYFSFENGVCSFDNMTVKYVSTSSKSPV 197
>SPBC1773.07c |sbp1|yrb1|Ran GTPase binding protein
Sbp1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 215
Score = 27.5 bits (58), Expect = 1.4
Identities = 18/51 (35%), Positives = 31/51 (60%), Gaps = 3/51 (5%)
Frame = +2
Query: 224 SAEDVATEKTQ--KSLF-DGIEKFDATSLKHTETQEKNPLPDKDAIEAEKE 367
++EDVA+++T+ K++F DG+ K + S T ++K D+DA A E
Sbjct: 22 ASEDVASKQTEEAKAVFGDGVAKQENKSGASTNDEKKPAEGDEDAEPASPE 72
>SPBC336.07 |sfc3||transcription factor TFIIIC complex subunit
Sfc3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1339
Score = 27.5 bits (58), Expect = 1.4
Identities = 16/65 (24%), Positives = 32/65 (49%), Gaps = 4/65 (6%)
Frame = +2
Query: 302 KHTETQEKNPLPDKDAIEAEKEKNKFL----NGIESFDPTKLKHTETCEKNPLPTKDVIE 469
+H E+ E P+ ++ + EKEK+ + +ES P H T +K+P+ +
Sbjct: 801 RHKESSETKPVDKEEVKKNEKEKDDPMRLAQQLLESLAPDFALHENTQQKSPVEKPKKLR 860
Query: 470 QEKSA 484
+++ A
Sbjct: 861 KDRYA 865
>SPCC297.05 |||diacylglycerol binding protein |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 973
Score = 26.6 bits (56), Expect = 2.4
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = +2
Query: 362 KEKNKFLNGIESFDPTKLKHTETCEKN 442
K + K L G +S DP L+ + CE+N
Sbjct: 307 KMQEKELEGSDSIDPILLEKIDVCEEN 333
>SPAC23D3.14c |aah2||alpha-amylase homolog Aah2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 581
Score = 26.2 bits (55), Expect = 3.1
Identities = 21/59 (35%), Positives = 29/59 (49%), Gaps = 3/59 (5%)
Frame = +2
Query: 140 ANDLKSQLE---GFNTSCLRDVDTNEKIVLPSAEDVATEKTQKSLFDGIEKFDATSLKH 307
+ND++S G L DVDT ++VL E Q+ DGI +FDA +KH
Sbjct: 182 SNDIESVQNCWLGDENLLLADVDTENEVVLSVLEKWIKNVVQEYDIDGI-RFDA--IKH 237
>SPBC16D10.10 |||tRNA specific adenosine deaminase subunit Tad2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 367
Score = 25.8 bits (54), Expect = 4.1
Identities = 18/64 (28%), Positives = 29/64 (45%), Gaps = 2/64 (3%)
Frame = +2
Query: 125 DLPKVANDLKSQLEGFNTSCLRDVDTNEKIVLPSAEDVATEK--TQKSLFDGIEKFDATS 298
DL KV ND + + S + N I+LP E++ T + L D + + + TS
Sbjct: 144 DLTKVLNDFVTLSKPAYDSSIHPTRENADIILPQKENIDTALLFVSQHLQDILAEMNKTS 203
Query: 299 LKHT 310
+T
Sbjct: 204 SSNT 207
>SPCC645.05c |myo2|rng5|myosin II heavy chain|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1526
Score = 25.8 bits (54), Expect = 4.1
Identities = 26/129 (20%), Positives = 47/129 (36%), Gaps = 3/129 (2%)
Frame = +2
Query: 125 DLPKVANDLKSQLEGFNTSCLRDVDTNEKIVLPSAE-DVATEKTQKSLFDGIEKFDATSL 301
D ++ + +L S NE + SA + + L + K +
Sbjct: 877 DKEEILRRTQERLANIEDSFSETKQQNENLQRESASLKQINNELESELLEKTSKVETLLS 936
Query: 302 KHTETQEKNPLPDKDAIEAEKEKNKFLNGIESFDPTKLKHTETCE--KNPLPTKDVIEQE 475
+ E +EK L +KD ++ + E + K + E C+ + + TKD E +
Sbjct: 937 EQNELKEKLSLEEKDLLDTKGELESLRENNATVLSEKAEFNEQCKSLQETIVTKDA-ELD 995
Query: 476 KSA*ITSSY 502
K S Y
Sbjct: 996 KLTKYISDY 1004
>SPBC14F5.07 |||ER-localized ubiquitin ligase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1242
Score = 25.4 bits (53), Expect = 5.5
Identities = 18/52 (34%), Positives = 25/52 (48%)
Frame = -1
Query: 430 SFSVLQLCRVEAFDAVQELIFLFFCFDSIFVRQRVLLLGFCMFQTGGIEFLN 275
SFS+ + RV AV F+ + R L+G+CMF GI +LN
Sbjct: 582 SFSIFPVFRVCQMFAVILKDFVENYSNRPVDRVFTTLIGYCMFTFLGISYLN 633
>SPAC1D4.04 |cct2||chaperonin-containing T-complex beta subunit
Cct2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 527
Score = 25.4 bits (53), Expect = 5.5
Identities = 18/76 (23%), Positives = 37/76 (48%), Gaps = 1/76 (1%)
Frame = -1
Query: 532 RDIVVARVKLIRGSDSSGFLLLDDIFSWEWILFASFSVLQLCRVEAFDAVQELIFLFFC- 356
R+ + A+V+ I+ + + F+ I++W LFA ++ + + FD ++ L +
Sbjct: 268 REKMKAKVEKIKSHNINCFINRQLIYNWPEQLFADAGIMSIEHAD-FDGIERLSLVTGGE 326
Query: 355 FDSIFVRQRVLLLGFC 308
S F ++ LG C
Sbjct: 327 IASTFDHPELVKLGHC 342
>SPBC1539.05 |cog3||Golgi transport complex subunit Cog3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 735
Score = 25.4 bits (53), Expect = 5.5
Identities = 19/86 (22%), Positives = 39/86 (45%), Gaps = 2/86 (2%)
Frame = +2
Query: 155 SQLEGFNTSCLR-DVDTNEKIVLPSAEDVATEKTQKSLFDGIEKFDATSLKHTETQEK-N 328
S ++ F + L + + +K V+ + E ++ LF + +++ T+E N
Sbjct: 400 SYIQSFQNAILEGEREDVDKKVVEFLNPLVLELQERLLFVVQTAIETDIQRYSPTEEDLN 459
Query: 329 PLPDKDAIEAEKEKNKFLNGIESFDP 406
P+ D ++ + EK + N E DP
Sbjct: 460 PIADDKSLLFDLEKLRLNNDEEKLDP 485
>SPCC737.07c |||DNA polymerase alpha-associated DNA helicase A
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 660
Score = 25.0 bits (52), Expect = 7.2
Identities = 16/69 (23%), Positives = 32/69 (46%)
Frame = +2
Query: 134 KVANDLKSQLEGFNTSCLRDVDTNEKIVLPSAEDVATEKTQKSLFDGIEKFDATSLKHTE 313
K N+ +EG T R + + + L S ED+ + T+ S+ + + ++HT
Sbjct: 111 KRPNETDISVEGVVT---RVHERHISVALKSEEDIPSSVTRLSVVKLVNRVTYERMRHTM 167
Query: 314 TQEKNPLPD 340
+ K +P+
Sbjct: 168 LEFKRSIPE 176
>SPAC22G7.10 |||mRNA cleavage and polyadenylation specificity factor
complex subunit, Fip1 homolog |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 344
Score = 25.0 bits (52), Expect = 7.2
Identities = 24/67 (35%), Positives = 30/67 (44%), Gaps = 6/67 (8%)
Frame = +2
Query: 221 PSAEDVAT-EKTQKSLFDGIEKFDATSLKHTETQ-----EKNPLPDKDAIEAEKEKNKFL 382
P +AT T+ S +EK A +K TE Q E P D DA+ KN F
Sbjct: 62 PLGGSIATLGSTRPSAKPQVEK-TAVEVKTTEPQDLSTAETAPKVDIDAVPTIDGKNIFE 120
Query: 383 NGIESFD 403
+ESFD
Sbjct: 121 IDLESFD 127
>SPBPB10D8.04c |||membrane transporter |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 25.0 bits (52), Expect = 7.2
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = -2
Query: 255 WVFSVATSSADGRTIFSFVSTSRKQL 178
W+FSVA S IFS + T R ++
Sbjct: 122 WIFSVAMSFFTAWVIFSTILTKRAKI 147
>SPBPB10D8.05c |||membrane transporter |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 25.0 bits (52), Expect = 7.2
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = -2
Query: 255 WVFSVATSSADGRTIFSFVSTSRKQL 178
W+FSVA S IFS + T R ++
Sbjct: 122 WIFSVAMSFFTAWVIFSTILTKRAKI 147
>SPBPB10D8.06c |||membrane transporter |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 25.0 bits (52), Expect = 7.2
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = -2
Query: 255 WVFSVATSSADGRTIFSFVSTSRKQL 178
W+FSVA S IFS + T R ++
Sbjct: 122 WIFSVAMSFFTAWVIFSTILTKRAKI 147
>SPAC23D3.06c |nup146||nucleoporin Nup146|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1325
Score = 25.0 bits (52), Expect = 7.2
Identities = 14/34 (41%), Positives = 17/34 (50%)
Frame = +2
Query: 239 ATEKTQKSLFDGIEKFDATSLKHTETQEKNPLPD 340
+T QKSL D E DA LK + + LPD
Sbjct: 83 STLDLQKSLIDADENVDANVLKDSASIRHVSLPD 116
>SPBPB10D8.07c |||membrane transporter |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 25.0 bits (52), Expect = 7.2
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = -2
Query: 255 WVFSVATSSADGRTIFSFVSTSRKQL 178
W+FSVA S IFS + T R ++
Sbjct: 122 WIFSVAMSFFTAWVIFSTILTKRAKI 147
>SPCC1020.05 |||phosphoprotein phosphatase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 509
Score = 25.0 bits (52), Expect = 7.2
Identities = 14/61 (22%), Positives = 28/61 (45%)
Frame = +2
Query: 320 EKNPLPDKDAIEAEKEKNKFLNGIESFDPTKLKHTETCEKNPLPTKDVIEQEKSA*ITSS 499
E N L +D +E + + LN L CE P P+ + +++++ + +T +
Sbjct: 140 EFNTLLGEDVVELREGWSAVLNDFIYLGQPVLLTQRPCETPPTPSIEALKRKELSSVTLT 199
Query: 500 Y 502
Y
Sbjct: 200 Y 200
>SPAC29E6.06c ||SPAC30.10c|cysteine-tRNA ligase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 754
Score = 24.6 bits (51), Expect = 9.5
Identities = 16/54 (29%), Positives = 31/54 (57%), Gaps = 1/54 (1%)
Frame = +2
Query: 167 GFNTSCLRDV-DTNEKIVLPSAEDVATEKTQKSLFDGIEKFDATSLKHTETQEK 325
G+N + +++V D ++KI+L + Q+ LF+ +K T+ H+E +EK
Sbjct: 77 GYNITFVQNVTDIDDKIILRAR--------QQYLFEEYKKQQGTNKSHSEAREK 122
>SPAC23C4.10 |sec2||guanyl-nucleotide exchange factor Sec2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 527
Score = 24.6 bits (51), Expect = 9.5
Identities = 16/67 (23%), Positives = 27/67 (40%)
Frame = +2
Query: 278 EKFDATSLKHTETQEKNPLPDKDAIEAEKEKNKFLNGIESFDPTKLKHTETCEKNPLPTK 457
+ FD +K +EK L + AE EK++ N +E + + N K
Sbjct: 74 KSFDEELVKFHNLEEKLQLTETKCRNAESEKSRVENELEDLTSSLFEEANRMVAN--ARK 131
Query: 458 DVIEQEK 478
+ + EK
Sbjct: 132 ETVASEK 138
>SPCC1919.14c |bdp1||transcription factor TFIIIB complex subunit
Bdp1 |Schizosaccharomyces pombe|chr 3|||Manual
Length = 507
Score = 24.6 bits (51), Expect = 9.5
Identities = 15/44 (34%), Positives = 22/44 (50%)
Frame = +2
Query: 353 EAEKEKNKFLNGIESFDPTKLKHTETCEKNPLPTKDVIEQEKSA 484
E EKE K E+F+ + + E E+ L +EQEK+A
Sbjct: 445 EMEKELQKIR---ENFEEERRRAIEVAEQRQLIVNHELEQEKNA 485
>SPBC23E6.09 |ssn6||transcriptional corepressor
Ssn6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1102
Score = 24.6 bits (51), Expect = 9.5
Identities = 14/60 (23%), Positives = 29/60 (48%), Gaps = 2/60 (3%)
Frame = +2
Query: 230 EDVATEKTQKSLFDGIEKFDATSLKHTETQEKNP--LPDKDAIEAEKEKNKFLNGIESFD 403
+DV E+ ++S+ + ++ TS +E+ K+P D + + E +NG + D
Sbjct: 960 DDVGEEEVKQSVSEQVDSAQLTSEPKSESLPKSPEEKSDDTSNDVTTENTNDINGDSNMD 1019
>SPAC10F6.09c |psm3|smc3|mitotic cohesin complex subunit
Psm3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1194
Score = 24.6 bits (51), Expect = 9.5
Identities = 14/33 (42%), Positives = 21/33 (63%)
Frame = +3
Query: 435 KRIHSQLKMSSSKRNPLESLPRISLTLATTISR 533
+RI+S++ S KRN LESL + +AT I +
Sbjct: 876 QRINSEI---SDKRNELESLEELQHEVATRIEQ 905
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,249,658
Number of Sequences: 5004
Number of extensions: 47888
Number of successful extensions: 169
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 161
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 169
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 223909422
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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