Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0007_I10
(544 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_03_0355 + 19822110-19824491 31 0.79
10_06_0094 - 10604597-10605028,10605673-10605738,10606249-10606371 30 1.4
07_03_1577 - 27869596-27869682,27869769-27869869,27869956-278699... 30 1.4
03_05_0070 - 20478396-20478505,20478605-20478780,20481162-204812... 29 2.4
02_03_0171 + 15945591-15945681,15947068-15947138,15947715-159478... 29 2.4
08_02_1236 + 25454371-25456801,25456891-25457177,25457258-254574... 29 3.2
12_02_0820 + 23437811-23440230,23440336-23440534 28 4.2
07_03_1408 - 26353389-26355191 28 4.2
06_02_0038 + 10865068-10865150,10865249-10865335,10865835-108659... 28 4.2
02_05_0280 + 27435166-27435254,27436348-27436437,27436764-274368... 28 5.5
12_02_0541 + 20162313-20162374,20162670-20163419,20164627-201648... 27 7.3
07_03_0735 + 21075033-21075846,21077065-21077199,21077384-210775... 27 7.3
03_04_0013 + 16436438-16436536,16437257-16437742,16437791-164378... 27 7.3
04_04_0175 - 23307507-23308688,23308962-23309647,23310662-23310680 27 9.7
>06_03_0355 + 19822110-19824491
Length = 793
Score = 30.7 bits (66), Expect = 0.79
Identities = 20/72 (27%), Positives = 36/72 (50%), Gaps = 3/72 (4%)
Frame = +2
Query: 185 LRDVDTNEKIVLPSAEDVATEKTQKSLFDGIEKFDATSLKHTET---QEKNPLPDKDAIE 355
+ +V +++LP+ E+VATE + +E DA SL T +E +P+ D E
Sbjct: 203 VEEVSVTHEVMLPNYEEVATEGDGDTAMAAVEN-DAGSLAETVVMTHEEFVAVPEDDEEE 261
Query: 356 AEKEKNKFLNGI 391
A+ ++ G+
Sbjct: 262 ADGDEENDATGL 273
>10_06_0094 - 10604597-10605028,10605673-10605738,10606249-10606371
Length = 206
Score = 29.9 bits (64), Expect = 1.4
Identities = 16/28 (57%), Positives = 20/28 (71%)
Frame = +1
Query: 340 QRCYRSRKREK*VPERHRKLRPDKAEAH 423
Q+C R R + VP+R R+LRPD AEAH
Sbjct: 66 QKC-RPDVRHRRVPQR-RRLRPDAAEAH 91
>07_03_1577 -
27869596-27869682,27869769-27869869,27869956-27869995,
27870879-27870953
Length = 100
Score = 29.9 bits (64), Expect = 1.4
Identities = 10/25 (40%), Positives = 19/25 (76%)
Frame = +2
Query: 146 DLKSQLEGFNTSCLRDVDTNEKIVL 220
DL+S+L+ NT CL + + N+K+++
Sbjct: 54 DLQSKLDAVNTECLAEKEKNKKLII 78
>03_05_0070 -
20478396-20478505,20478605-20478780,20481162-20481265,
20481346-20481504,20481718-20481857,20482222-20482311,
20482902-20482970,20484295-20484516,20486175-20486293,
20486377-20486492,20488058-20488146,20488790-20488883
Length = 495
Score = 29.1 bits (62), Expect = 2.4
Identities = 12/31 (38%), Positives = 21/31 (67%)
Frame = +2
Query: 122 KDLPKVANDLKSQLEGFNTSCLRDVDTNEKI 214
K+L + +DLKS+LEG+NT D++ + +
Sbjct: 266 KELDERRHDLKSELEGYNTGDSDDINKKKAL 296
>02_03_0171 +
15945591-15945681,15947068-15947138,15947715-15947817,
15948189-15948328,15948535-15948693,15948775-15948878,
15950373-15950548,15952643-15952832,15953704-15953803,
15954171-15954339,15954908-15954990,15955073-15955149,
15955386-15955557
Length = 544
Score = 29.1 bits (62), Expect = 2.4
Identities = 12/31 (38%), Positives = 21/31 (67%)
Frame = +2
Query: 122 KDLPKVANDLKSQLEGFNTSCLRDVDTNEKI 214
K+L + +DLKS+LEG+NT D++ + +
Sbjct: 88 KELDERMHDLKSELEGYNTGDSDDINKKKAL 118
>08_02_1236 +
25454371-25456801,25456891-25457177,25457258-25457416,
25457561-25457740,25457823-25458017,25459059-25459157,
25459508-25460137,25460250-25460591
Length = 1440
Score = 28.7 bits (61), Expect = 3.2
Identities = 24/119 (20%), Positives = 57/119 (47%), Gaps = 5/119 (4%)
Frame = +2
Query: 143 NDLKSQLEGFNTSCLRDVDTN--EKIVLPSAEDVATEKTQKSLFDGIEKFDATSLKHTET 316
N L+++ + L D T+ ++ + S D A + S +EK D T++ TET
Sbjct: 543 NLLENRADDNREDALEDAFTSGIDEAAITSGVDEAAMEADAST---VEKNDDTAIDGTET 599
Query: 317 QEKNPLPDKDAIEA-EKEKNKFLNGIESFDPTKLKHTE--TCEKNPLPTKDVIEQEKSA 484
+EK+ + D ++ + K+ G+ + + + E +C + +++ +Q++++
Sbjct: 600 KEKHEKTNDDILQGLDLSKDNVECGVNGDEVSTFQPVESISCSTVEIEREEISDQQQTS 658
>12_02_0820 + 23437811-23440230,23440336-23440534
Length = 872
Score = 28.3 bits (60), Expect = 4.2
Identities = 22/71 (30%), Positives = 31/71 (43%)
Frame = -3
Query: 401 RSFRCRSGTYFSLFLLR*HLCQAEGSSPGFLYVSNWWHRISQYRRIGIFGFFQWQHLQPT 222
R F CR+ T +L A + P F S + + QY +G+ F ++Q T
Sbjct: 615 RVFACRNATVHEEAMLAIGAL-AYAAGPNF---SKYMPQFYQYLEMGLQNFEEYQVCAIT 670
Query: 221 VGRSSHLCRRL 189
VG LCR L
Sbjct: 671 VGVVGDLCRAL 681
>07_03_1408 - 26353389-26355191
Length = 600
Score = 28.3 bits (60), Expect = 4.2
Identities = 23/88 (26%), Positives = 40/88 (45%), Gaps = 2/88 (2%)
Frame = +2
Query: 224 SAEDVATEKTQKSLFDGIEKFDATSLKHTETQEKNPLPDKDAI--EAEKEKNKFLNGIES 397
SAE+V EK++K +K + S +EK + D + + E +K+K K G +
Sbjct: 507 SAEEVEGEKSEKKKKKKKDKGEQGSGDAEVKEEKADISDGEKVGSEKKKKKKKSKEGGDV 566
Query: 398 FDPTKLKHTETCEKNPLPTKDVIEQEKS 481
DP + + E K +++KS
Sbjct: 567 VDPESAANGDGVEAEKSEKKKEKKKKKS 594
>06_02_0038 +
10865068-10865150,10865249-10865335,10865835-10865936,
10867000-10870078
Length = 1116
Score = 28.3 bits (60), Expect = 4.2
Identities = 13/41 (31%), Positives = 18/41 (43%)
Frame = +3
Query: 18 CRNSARGIAALSLISHQFLYLIKQWPAQWVTLPP*RTCRRW 140
CR I +L+ FLYL QW V +P ++ W
Sbjct: 489 CREVHTSIYVFALVGAVFLYLCIQWIEHMVPIPCIKSSMEW 529
>02_05_0280 +
27435166-27435254,27436348-27436437,27436764-27436866,
27437318-27437377,27437745-27439148,27439227-27439328,
27439424-27439609,27439695-27439820,27439905-27440000,
27440509-27440574
Length = 773
Score = 27.9 bits (59), Expect = 5.5
Identities = 19/57 (33%), Positives = 31/57 (54%)
Frame = -2
Query: 276 IPSNRDFWVFSVATSSADGRTIFSFVSTSRKQLVLNPSS*LLRSLATFGKSFREGAS 106
+P ++ F + S+ SSADG T ++K L + S LRSLA+F + + +S
Sbjct: 149 LPYHQQFQLSSL--SSADGLTNIKTDPENKKLLENSASVESLRSLASFSSKYSQSSS 203
>12_02_0541 +
20162313-20162374,20162670-20163419,20164627-20164820,
20165001-20165074,20165094-20165114
Length = 366
Score = 27.5 bits (58), Expect = 7.3
Identities = 24/84 (28%), Positives = 39/84 (46%), Gaps = 2/84 (2%)
Frame = +2
Query: 197 DTNEKIVLPSAEDVATEKT--QKSLFDGIEKFDATSLKHTETQEKNPLPDKDAIEAEKEK 370
DT +I P D++ ++T + F G + +T+ K T K P PD +A +E
Sbjct: 211 DTKPEIE-PDITDLSEDETPAHRITFVGGPRTLSTARKSTRPPGKKPKPDPEATTSEPWG 269
Query: 371 NKFLNGIESFDPTKLKHTETCEKN 442
+ L I++ PT T +KN
Sbjct: 270 LR-LVAIQNHTPTPTLATPGAKKN 292
>07_03_0735 +
21075033-21075846,21077065-21077199,21077384-21077517,
21077604-21077814,21078033-21078270,21078346-21078496,
21078593-21078931
Length = 673
Score = 27.5 bits (58), Expect = 7.3
Identities = 14/40 (35%), Positives = 22/40 (55%)
Frame = +2
Query: 209 KIVLPSAEDVATEKTQKSLFDGIEKFDATSLKHTETQEKN 328
K VLPS E++A ++ S GIE+ + + Q+KN
Sbjct: 361 KGVLPSGEEIAVKRLSMSSGQGIEELKNELVLVAKLQQKN 400
>03_04_0013 +
16436438-16436536,16437257-16437742,16437791-16437826,
16437835-16438323,16438951-16439622
Length = 593
Score = 27.5 bits (58), Expect = 7.3
Identities = 13/31 (41%), Positives = 17/31 (54%)
Frame = +2
Query: 329 PLPDKDAIEAEKEKNKFLNGIESFDPTKLKH 421
P ++ E EKEK K +N + P KLKH
Sbjct: 489 PFTEEKLQELEKEKEKKINDMAKGWPEKLKH 519
>04_04_0175 - 23307507-23308688,23308962-23309647,23310662-23310680
Length = 628
Score = 27.1 bits (57), Expect = 9.7
Identities = 23/86 (26%), Positives = 33/86 (38%), Gaps = 1/86 (1%)
Frame = +2
Query: 134 KVANDLKSQLEGFNTSCLRDVDTNEKIVLPSAEDVATEKTQKSL-FDGIEKFDATSLKHT 310
K NDLKSQ+ +C+ D DT E+ D+ + L +EK L
Sbjct: 145 KSVNDLKSQIVVLPEACVTDGDTVEQNHPCKLHDLEGNSSVDGLTVVNVEKSTPKQLVSN 204
Query: 311 ETQEKNPLPDKDAIEAEKEKNKFLNG 388
+ E D E+ + LNG
Sbjct: 205 DNAEYCQQMGADVSESSENHGPNLNG 230
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,382,100
Number of Sequences: 37544
Number of extensions: 339471
Number of successful extensions: 979
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 950
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 979
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1210221432
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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