Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0007_I08
(429 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC3C7.11c |cnx1|cal1, cal1|calnexin |Schizosaccharomyces pombe... 59 2e-10
SPBC1773.09c |mug184||meiotically upregulated gene Mug184|Schizo... 29 0.31
SPAC17H9.20 |psc3|SPAC607.01|mitotic cohesin complex, non-SMC su... 27 1.6
SPAC4H3.02c |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 26 2.2
SPBC1289.14 ||SPBC8E4.10c|adducin|Schizosaccharomyces pombe|chr ... 26 2.9
SPAC29A4.11 |rga3||GTPase activating protein Rga3|Schizosaccharo... 25 3.8
SPBC19C2.11c |||mitochondrial outer membrane protein |Schizosacc... 25 3.8
SPAC139.03 |||transcription factor, zf-fungal binuclear cluster ... 25 5.0
SPBC1289.10c |||transcription factor |Schizosaccharomyces pombe|... 25 6.6
SPAC18G6.02c |chp1||chromodomain protein Chp1|Schizosaccharomyce... 25 6.6
SPAC3H5.06c |pol1|swi7, polA|DNA polymerase alpha catalytic subu... 24 8.7
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 24 8.7
SPBC1683.10c |pcl1||ferrous iron transporter Pcl1|Schizosaccharo... 24 8.7
>SPAC3C7.11c |cnx1|cal1, cal1|calnexin |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 560
Score = 59.3 bits (137), Expect = 2e-10
Identities = 36/85 (42%), Positives = 45/85 (52%), Gaps = 9/85 (10%)
Frame = +1
Query: 16 VHVIFSYKG-------KNHLIKKDIRCNDDVYTHLYTLIVKPDNTYEVLIDNEKVESGEL 174
VH IF +K + HL + T+LYTLIVKPD T+EV I+ + V G L
Sbjct: 169 VHFIFKHKNPLTGEYSEKHLDSRPASLLKPGITNLYTLIVKPDQTFEVRINGDVVRQGSL 228
Query: 175 EADW--DFLPPKKIKDPEAKKPEDW 243
D+ LPP +I DPE KP DW
Sbjct: 229 FYDFIPPVLPPVEIYDPEDIKPADW 253
Score = 35.1 bits (77), Expect = 0.005
Identities = 13/21 (61%), Positives = 15/21 (71%)
Frame = +1
Query: 181 DWDFLPPKKIKDPEAKKPEDW 243
DWD P+ I DP+A KPEDW
Sbjct: 269 DWDEDAPRMIPDPDAVKPEDW 289
Score = 31.5 bits (68), Expect = 0.057
Identities = 13/21 (61%), Positives = 14/21 (66%)
Frame = +1
Query: 181 DWDFLPPKKIKDPEAKKPEDW 243
DW P I DPEA+KPEDW
Sbjct: 288 DWLEDEPLYIPDPEAQKPEDW 308
>SPBC1773.09c |mug184||meiotically upregulated gene
Mug184|Schizosaccharomyces pombe|chr 2|||Manual
Length = 551
Score = 29.1 bits (62), Expect = 0.31
Identities = 19/71 (26%), Positives = 34/71 (47%), Gaps = 1/71 (1%)
Frame = +1
Query: 31 SYKGKNHLIKKDIRCNDDVYTHLYTLIVKPDNTYEVLIDNEKVESGELE-ADWDFLPPKK 207
S + K H KK D Y+H+Y + P + + + ++ ES + E + D+LP
Sbjct: 137 STRKKEHFNKKPSFPRDTEYSHIYNMKYDPRSGIGIRVKRQEPESLKKENNNSDYLPKSA 196
Query: 208 IKDPEAKKPED 240
+K + P+D
Sbjct: 197 MKQKKG-GPKD 206
>SPAC17H9.20 |psc3|SPAC607.01|mitotic cohesin complex, non-SMC
subunit Psc3 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 962
Score = 26.6 bits (56), Expect = 1.6
Identities = 14/54 (25%), Positives = 25/54 (46%)
Frame = +1
Query: 79 DDVYTHLYTLIVKPDNTYEVLIDNEKVESGELEADWDFLPPKKIKDPEAKKPED 240
D +Y L +L+ + N+YE + + + + W FL D E KK ++
Sbjct: 753 DIIYERLVSLLSRVPNSYEDTLKFSAINTLQSLLFWFFLRKDNPADEEKKKDDE 806
>SPAC4H3.02c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 391
Score = 26.2 bits (55), Expect = 2.2
Identities = 12/28 (42%), Positives = 15/28 (53%)
Frame = +1
Query: 160 ESGELEADWDFLPPKKIKDPEAKKPEDW 243
E L+ LP + K P AKKPED+
Sbjct: 157 EKNTLDLKHCLLPSPEYKAPPAKKPEDY 184
>SPBC1289.14 ||SPBC8E4.10c|adducin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 324
Score = 25.8 bits (54), Expect = 2.9
Identities = 11/35 (31%), Positives = 19/35 (54%)
Frame = +1
Query: 76 NDDVYTHLYTLIVKPDNTYEVLIDNEKVESGELEA 180
N+++ HL + +PD T LI+ + GE+ A
Sbjct: 95 NENILNHLTAKVEEPDGTASFLINPYGLRYGEITA 129
>SPAC29A4.11 |rga3||GTPase activating protein
Rga3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 969
Score = 25.4 bits (53), Expect = 3.8
Identities = 15/43 (34%), Positives = 21/43 (48%), Gaps = 2/43 (4%)
Frame = +1
Query: 49 HLIKKDIRCNDDVYTHLYTLI--VKPDNTYEVLIDNEKVESGE 171
HL C + T+L+ L V P YE L++ EK+E E
Sbjct: 840 HLTSDLFACTSVLKTYLHRLPEPVIPGTQYEELLEAEKIEKEE 882
>SPBC19C2.11c |||mitochondrial outer membrane protein
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 452
Score = 25.4 bits (53), Expect = 3.8
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = +2
Query: 185 GTSYLRRRSRIQKQRNLKIGTTNPQS 262
GTS RRR R++K+ +KI + +S
Sbjct: 340 GTSQFRRRERVKKRHVIKIHEASNKS 365
>SPAC139.03 |||transcription factor, zf-fungal binuclear cluster
type |Schizosaccharomyces pombe|chr 1|||Manual
Length = 625
Score = 25.0 bits (52), Expect = 5.0
Identities = 8/14 (57%), Positives = 12/14 (85%)
Frame = +1
Query: 175 EADWDFLPPKKIKD 216
E+ +D+LPPKK+ D
Sbjct: 179 ESAYDYLPPKKVSD 192
>SPBC1289.10c |||transcription factor |Schizosaccharomyces pombe|chr
2|||Manual
Length = 743
Score = 24.6 bits (51), Expect = 6.6
Identities = 16/44 (36%), Positives = 22/44 (50%)
Frame = +2
Query: 179 PTGTSYLRRRSRIQKQRNLKIGTTNPQSPTRKTRNPRTGTNLST 310
P +S L RS+ QK + P +PT T NP + TN +T
Sbjct: 598 PNASSPLDVRSK-QKPSSANSNAPTP-APTVNTTNPESSTNEAT 639
>SPAC18G6.02c |chp1||chromodomain protein Chp1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 960
Score = 24.6 bits (51), Expect = 6.6
Identities = 15/41 (36%), Positives = 21/41 (51%)
Frame = +2
Query: 215 IQKQRNLKIGTTNPQSPTRKTRNPRTGTNLSTFRTLMPVSL 337
IQ NL+ N + +P++ T LSTFR P+SL
Sbjct: 237 IQNSNNLE----NTGAFVENANSPQSNTPLSTFRHSSPLSL 273
>SPAC3H5.06c |pol1|swi7, polA|DNA polymerase alpha catalytic subunit
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1405
Score = 24.2 bits (50), Expect = 8.7
Identities = 15/65 (23%), Positives = 28/65 (43%)
Frame = +1
Query: 43 KNHLIKKDIRCNDDVYTHLYTLIVKPDNTYEVLIDNEKVESGELEADWDFLPPKKIKDPE 222
KNH ++ + V L + DN Y+ ++ + K + L+ D P +K +
Sbjct: 995 KNHALRIGNEFKEKVNERYSKLEIDIDNVYQRMLLHAKKKYAALQLDSQGKPNLDVKGLD 1054
Query: 223 AKKPE 237
K+ E
Sbjct: 1055 MKRRE 1059
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 24.2 bits (50), Expect = 8.7
Identities = 20/78 (25%), Positives = 34/78 (43%)
Frame = +2
Query: 65 TSAAMTTFTRTCTLSS*NRITLTRSSSTMRRLNLVN*KPTGTSYLRRRSRIQKQRNLKIG 244
TS + T + + L+S NR + T +SST + + + TS+ S N+
Sbjct: 628 TSTSKVTSSTSIPLTSTNRTSTTFTSSTSISTSSSSTATSSTSFASESSSFYS--NVTTS 685
Query: 245 TTNPQSPTRKTRNPRTGT 298
++ +P T P T T
Sbjct: 686 SSTVSTPPPTTSFPSTFT 703
>SPBC1683.10c |pcl1||ferrous iron transporter
Pcl1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 242
Score = 24.2 bits (50), Expect = 8.7
Identities = 16/54 (29%), Positives = 26/54 (48%)
Frame = -1
Query: 372 FPLSIHLIIPIFRLTGIRVRNVLRFVPVLGFLVFRVGDCGFVVPIFRFLCFWIL 211
FPL LI P+ L+ + + F+ +LGF+ +G V I R + +L
Sbjct: 166 FPLLTSLITPLEYLSLVLPIATMFFLGMLGFVGAHIGGAKRVRAILRAVVLGLL 219
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.314 0.138 0.436
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,711,330
Number of Sequences: 5004
Number of extensions: 35020
Number of successful extensions: 91
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 82
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 90
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 154448264
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
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