Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0007_I08
(429 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_01_0971 + 8169197-8169311,8170351-8170458,8170533-8170725,817... 127 3e-30
03_06_0563 - 34738732-34738890,34738965-34739009,34739154-347392... 117 4e-27
01_06_1654 - 38924090-38924101,38924183-38924215,38924737-389248... 116 8e-27
05_06_0014 + 24854462-24854570,24854958-24855065,24855240-248554... 112 1e-25
03_06_0382 - 33530943-33530966,33531160-33531360,33535494-33537026 88 2e-18
04_03_0812 - 19922208-19922357,19922448-19922564,19922681-199227... 56 1e-08
06_02_0225 + 13257655-13260693 29 1.2
12_02_0944 - 24666114-24666200,24666287-24666352,24666450-246665... 29 2.1
08_02_0972 - 23187294-23188034 28 2.8
01_05_0428 + 22060431-22060850 28 3.7
09_04_0540 - 18420517-18420822,18420903-18421037,18421118-184212... 27 6.4
01_06_0050 + 25967604-25967685,25967780-25967891,25969238-259693... 27 6.4
01_01_0588 + 4372877-4372949,4374328-4376262,4376940-4377015,437... 27 8.5
>07_01_0971 +
8169197-8169311,8170351-8170458,8170533-8170725,
8170811-8171069,8171151-8171207,8171433-8171480,
8171571-8171657,8171743-8171800,8171891-8171958,
8172066-8172161,8172244-8172291,8172658-8172696,
8172782-8172868,8173136-8173147
Length = 424
Score = 127 bits (307), Expect = 3e-30
Identities = 62/140 (44%), Positives = 75/140 (53%), Gaps = 1/140 (0%)
Frame = +1
Query: 10 RSVHVIFSYKGKNHLIKKDIRCNDDVYTHLYTLIVKPDNTYEVLIDNEKVESGELEADWD 189
+ VH IF+ KNHLIKKD+ C D +H+YTLI+ PD TY +LIDN + +SG + WD
Sbjct: 152 KKVHTIFTKNDKNHLIKKDVPCETDQLSHVYTLIIHPDATYTILIDNVEKQSGSIYEHWD 211
Query: 190 FLPPKKIKDPEAKKPEDWXXXXXX-XXXXXXXXXXXXXXXHIPDPDASKXXXXXXXXXXX 366
LPPK+IKDPEAKKPEDW IPDPDA K
Sbjct: 212 ILPPKQIKDPEAKKPEDWDDKEYIPDPEDKKPEGYDDIPKEIPDPDAKKPEDWDDEEDGE 271
Query: 367 XXXXXIDNPDYNGVWAPKQI 426
I NP+Y G W K+I
Sbjct: 272 WTAPTIPNPEYKGPWKQKKI 291
>03_06_0563 -
34738732-34738890,34738965-34739009,34739154-34739201,
34739291-34739386,34739467-34739534,34739633-34739690,
34739783-34739869,34740004-34740051,34740360-34740416,
34740525-34740783,34740877-34741102,34741168-34741275,
34741885-34741987
Length = 453
Score = 117 bits (282), Expect = 4e-27
Identities = 55/140 (39%), Positives = 74/140 (52%), Gaps = 1/140 (0%)
Frame = +1
Query: 10 RSVHVIFSYKGKNHLIKKDIRCNDDVYTHLYTLIVKPDNTYEVLIDNEKVESGELEADWD 189
+ VH I + GKNHLIKKD+ C D TH+YTLI++PD Y +LIDN + ++G + DW+
Sbjct: 159 KKVHAILTKNGKNHLIKKDVPCKTDQLTHVYTLIIRPDAKYSILIDNTEKQTGSIYDDWN 218
Query: 190 FLPPKKIKDPEAKKPEDWXXXXXX-XXXXXXXXXXXXXXXHIPDPDASKXXXXXXXXXXX 366
+PPK +DPEAKKPEDW I DP+A+K
Sbjct: 219 IIPPKNKRDPEAKKPEDWDDNEYIPDPEDKKPEGYDDIPKEITDPEATKPEDWDDEEDGE 278
Query: 367 XXXXXIDNPDYNGVWAPKQI 426
I NP+Y G W K++
Sbjct: 279 WTAPTIPNPEYKGPWNQKKL 298
>01_06_1654 -
38924090-38924101,38924183-38924215,38924737-38924829,
38924909-38924965,38925048-38925143,38925237-38925304,
38925429-38925486,38925572-38925658,38925935-38925982,
38926060-38926116,38926200-38926458,38926666-38926858,
38926991-38927098,38927849-38927957
Length = 425
Score = 116 bits (279), Expect = 8e-27
Identities = 55/140 (39%), Positives = 74/140 (52%), Gaps = 1/140 (0%)
Frame = +1
Query: 10 RSVHVIFSYKGKNHLIKKDIRCNDDVYTHLYTLIVKPDNTYEVLIDNEKVESGELEADWD 189
+ +H+I SY+G+N+ IKKD++C D TH+YT I++PD +Y +L+DN + ESG + DWD
Sbjct: 150 KKLHLILSYQGQNYPIKKDLQCETDKLTHVYTFILRPDASYSILVDNRERESGSMYTDWD 209
Query: 190 FLPPKKIKDPEAKKPEDWXXXXXXXX-XXXXXXXXXXXXXHIPDPDASKXXXXXXXXXXX 366
LPP+KIKD AKKP+DW IPDP K
Sbjct: 210 ILPPRKIKDVHAKKPKDWDDREYIEDPDAVKPEGYDSIPKEIPDPKDKKPDTWDDDDDGI 269
Query: 367 XXXXXIDNPDYNGVWAPKQI 426
I NP Y G W K+I
Sbjct: 270 WKPRMIPNPAYKGPWKRKKI 289
>05_06_0014 +
24854462-24854570,24854958-24855065,24855240-24855432,
24855892-24856150,24856236-24856292,24856370-24856417,
24856725-24856811,24856885-24856942,24857084-24857151,
24857279-24857374,24857483-24857539,24857906-24857952,
24858184-24858210,24858312-24858504
Length = 468
Score = 112 bits (270), Expect = 1e-25
Identities = 53/140 (37%), Positives = 73/140 (52%), Gaps = 1/140 (0%)
Frame = +1
Query: 10 RSVHVIFSYKGKNHLIKKDIRCNDDVYTHLYTLIVKPDNTYEVLIDNEKVESGELEADWD 189
+ +H+I SY+G+N+ IKKD++C D TH YT I++PD +Y +L+DN + E G + DWD
Sbjct: 150 KKLHLILSYQGQNYPIKKDLKCETDKLTHFYTFILRPDASYSLLVDNREREFGSMYTDWD 209
Query: 190 FLPPKKIKDPEAKKPEDWXXXXXXXX-XXXXXXXXXXXXXHIPDPDASKXXXXXXXXXXX 366
LPP+KIK+ AKKP+DW IPDP K
Sbjct: 210 ILPPRKIKESNAKKPKDWDDREYIEDPDEVKPEGYDSIPKEIPDPKDKKPESWDDDDDGV 269
Query: 367 XXXXXIDNPDYNGVWAPKQI 426
I NP+Y G W K+I
Sbjct: 270 WKPRMIPNPEYKGRWKRKKI 289
>03_06_0382 - 33530943-33530966,33531160-33531360,33535494-33537026
Length = 585
Score = 88.2 bits (209), Expect = 2e-18
Identities = 38/64 (59%), Positives = 46/64 (71%)
Frame = +1
Query: 40 GKNHLIKKDIRCNDDVYTHLYTLIVKPDNTYEVLIDNEKVESGELEADWDFLPPKKIKDP 219
G NHLIKKD+ C D TH+YTLI++PD Y +LIDN + +G + D D LPPKK KDP
Sbjct: 515 GNNHLIKKDVPCETDQLTHVYTLIIRPDAKYSILIDNTEKRTGSIYGDCDNLPPKKKKDP 574
Query: 220 EAKK 231
EAKK
Sbjct: 575 EAKK 578
>04_03_0812 -
19922208-19922357,19922448-19922564,19922681-19922752,
19922864-19923993,19924939-19925008,19925125-19925199
Length = 537
Score = 56.0 bits (129), Expect = 1e-08
Identities = 37/87 (42%), Positives = 48/87 (55%), Gaps = 11/87 (12%)
Frame = +1
Query: 16 VHVIFSYK----GK--NHLIKKDIRCNDDVYTHLYTLIVKPDNTYEVLID-NEKVESGEL 174
VH I +K GK H +K D +H+YT I+KPDN +L+D EK ++ L
Sbjct: 145 VHFILKHKNPKTGKYVEHHLKFPPSVPYDKLSHVYTAILKPDNEVRILVDGEEKKKANFL 204
Query: 175 EADWDF----LPPKKIKDPEAKKPEDW 243
AD DF +P K I DP+ KKPEDW
Sbjct: 205 SAD-DFEPSLIPSKTIPDPDDKKPEDW 230
Score = 35.5 bits (78), Expect = 0.018
Identities = 27/105 (25%), Positives = 37/105 (35%)
Frame = +1
Query: 112 VKPDNTYEVLIDNEKVESGELEADWDFLPPKKIKDPEAKKPEDWXXXXXXXXXXXXXXXX 291
VKPD+ E + E W P++I DPEA KPEDW
Sbjct: 242 VKPDDWDEDAPMEIEDEEATKPEGWLDDEPEEIDDPEANKPEDWDDEEDGEWEAPKIDNP 301
Query: 292 XXXXXHIPDPDASKXXXXXXXXXXXXXXXXIDNPDYNGVWAPKQI 426
+ + IDNP+Y G+W P++I
Sbjct: 302 KCEEAP-GCGEWKRPMKQNPAYKGKWHAPLIDNPNYKGIWKPQEI 345
>06_02_0225 + 13257655-13260693
Length = 1012
Score = 29.5 bits (63), Expect = 1.2
Identities = 17/42 (40%), Positives = 26/42 (61%)
Frame = -1
Query: 390 VVDHRWFPLSIHLIIPIFRLTGIRVRNVLRFVPVLGFLVFRV 265
+V+ W PLS + IP L+ R+ ++RFV + FLV+RV
Sbjct: 132 LVEKPWKPLSRKVPIPPGILSPYRLLVLVRFVALFLFLVWRV 173
>12_02_0944 -
24666114-24666200,24666287-24666352,24666450-24666515,
24666607-24666825,24666927-24667403
Length = 304
Score = 28.7 bits (61), Expect = 2.1
Identities = 15/52 (28%), Positives = 23/52 (44%)
Frame = +2
Query: 221 KQRNLKIGTTNPQSPTRKTRNPRTGTNLSTFRTLMPVSLKIGMMRWMESGNH 376
K R + T+PQS + R R L T + L+P K+ + +E H
Sbjct: 215 KSRAGRGAATDPQSLYARKRRERINERLKTLQNLVPNGTKVDISTMLEEAVH 266
>08_02_0972 - 23187294-23188034
Length = 246
Score = 28.3 bits (60), Expect = 2.8
Identities = 15/55 (27%), Positives = 27/55 (49%)
Frame = +2
Query: 212 RIQKQRNLKIGTTNPQSPTRKTRNPRTGTNLSTFRTLMPVSLKIGMMRWMESGNH 376
R K+RN++I +T+PQS + R R + + L+P K+ ++ H
Sbjct: 148 RPPKRRNVRI-STDPQSVAARMRRERISERIRILQRLVPGGTKMDTASMLDEAIH 201
>01_05_0428 + 22060431-22060850
Length = 139
Score = 27.9 bits (59), Expect = 3.7
Identities = 12/23 (52%), Positives = 12/23 (52%), Gaps = 1/23 (4%)
Frame = -3
Query: 358 PSHHPNLQAYWHQG-PECAQVCP 293
P HHP A HQG P C CP
Sbjct: 6 PPHHPPCAACAHQGRPSCPAGCP 28
>09_04_0540 -
18420517-18420822,18420903-18421037,18421118-18421262,
18421384-18421463,18421573-18421683
Length = 258
Score = 27.1 bits (57), Expect = 6.4
Identities = 14/34 (41%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
Frame = -1
Query: 165 RFNLLIVDEDLVSVIRFHDESVQ-VRVNVVIAAD 67
RF+ VD D V+ + +H+ +Q VRV +IA D
Sbjct: 163 RFDFAFVDADKVNFLGYHERLLQLVRVGGLIAYD 196
>01_06_0050 +
25967604-25967685,25967780-25967891,25969238-25969361,
25969486-25969527,25969622-25969735,25969843-25969905,
25970741-25970868,25972198-25972279,25972372-25972423,
25972515-25972612,25972845-25973006,25973484-25973573,
25973700-25973777
Length = 408
Score = 27.1 bits (57), Expect = 6.4
Identities = 13/37 (35%), Positives = 20/37 (54%)
Frame = -1
Query: 399 VVGVVDHRWFPLSIHLIIPIFRLTGIRVRNVLRFVPV 289
+VGV+ H +FP II I L G+ + +L P+
Sbjct: 264 IVGVLAHEYFPKFTERIISITPLIGVLLTTLLCASPI 300
>01_01_0588 +
4372877-4372949,4374328-4376262,4376940-4377015,
4378900-4378970,4379038-4379144,4379241-4379711,
4379791-4379976,4380132-4380425,4380820-4381434,
4382219-4382615,4382768-4382850,4383397-4383567,
4384046-4384243,4384754-4385314,4385401-4385460,
4385553-4385869,4385980-4386403,4386539-4387006,
4387093-4387209,4387306-4387427,4387506-4388247,
4388453-4388485,4388625-4388879,4388975-4389160,
4390115-4390453,4391293-4392045
Length = 3017
Score = 26.6 bits (56), Expect = 8.5
Identities = 10/28 (35%), Positives = 16/28 (57%)
Frame = +1
Query: 139 LIDNEKVESGELEADWDFLPPKKIKDPE 222
L DN K+++G+L +W P + PE
Sbjct: 107 LTDNSKLDTGDLHGEWKEWRPTQCSVPE 134
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.314 0.138 0.436
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,516,971
Number of Sequences: 37544
Number of extensions: 245828
Number of successful extensions: 523
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 500
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 511
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 802495716
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
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