Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0007_I06
         (516 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U64600-2|AAK39200.2|  519|Caenorhabditis elegans Twik family of ...    30   1.1  
AF083653-1|AAC32864.1|  484|Caenorhabditis elegans putative pota...    30   1.1  

>U64600-2|AAK39200.2|  519|Caenorhabditis elegans Twik family of
           potassium channelsprotein 26 protein.
          Length = 519

 Score = 29.9 bits (64), Expect = 1.1
 Identities = 17/49 (34%), Positives = 28/49 (57%), Gaps = 2/49 (4%)
 Frame = +2

Query: 71  LLLLFPLEKCLNPRPVTQVKNTLLSPLGLALYMTMH--L*CTCVFVLYD 211
           + LL   +K L  +PV + KN +L P+ LAL++ +   L CT    ++D
Sbjct: 248 IFLLLKYKK-LRKQPVNRKKNEILLPMWLALFLVLAYILICTLTIKMFD 295


>AF083653-1|AAC32864.1|  484|Caenorhabditis elegans putative
           potassium channel subunitn2P26 protein.
          Length = 484

 Score = 29.9 bits (64), Expect = 1.1
 Identities = 17/49 (34%), Positives = 28/49 (57%), Gaps = 2/49 (4%)
 Frame = +2

Query: 71  LLLLFPLEKCLNPRPVTQVKNTLLSPLGLALYMTMH--L*CTCVFVLYD 211
           + LL   +K L  +PV + KN +L P+ LAL++ +   L CT    ++D
Sbjct: 213 IFLLLKYKK-LRKQPVNRKKNEILLPMWLALFLVLAYILICTLTIKMFD 260


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,404,973
Number of Sequences: 27780
Number of extensions: 190745
Number of successful extensions: 357
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 356
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 357
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 996506972
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)