Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0007_I06
         (516 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              22   4.3  
DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channe...    21   10.0 
AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein ...    21   10.0 
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       21   10.0 

>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 21.8 bits (44), Expect = 4.3
 Identities = 10/17 (58%), Positives = 12/17 (70%)
 Frame = -2

Query: 218 ALYRTEQTHRYIINASS 168
           ALY ++ TH Y I ASS
Sbjct: 793 ALYPSQTTHGYDIYASS 809


>DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channel
           protein.
          Length = 489

 Score = 20.6 bits (41), Expect = 10.0
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = +1

Query: 145 STGPRVIYDDAFIMYLCVCSV 207
           S+ PR+ Y  A  +YL +C V
Sbjct: 293 SSLPRISYVKAIDIYLVMCFV 313


>AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein
           protein.
          Length = 352

 Score = 20.6 bits (41), Expect = 10.0
 Identities = 6/11 (54%), Positives = 10/11 (90%)
 Frame = -3

Query: 112 PWVQALFERKQ 80
           PW+++ FERK+
Sbjct: 262 PWMRSQFERKR 272


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 20.6 bits (41), Expect = 10.0
 Identities = 7/24 (29%), Positives = 12/24 (50%)
 Frame = +3

Query: 72  YCYCFRSKSA*THGPLHKLKIHYC 143
           +CY  R+ +   +   H L +H C
Sbjct: 538 FCYFRRNAATWKNAVRHNLSLHKC 561


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 133,472
Number of Sequences: 438
Number of extensions: 2866
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14354847
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)