Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0007_I05
         (507 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC6F6.07c |rps13||40S ribosomal protein S13|Schizosaccharomyce...   145   4e-36
SPBC685.03 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    27   1.6  
SPAC1A6.05c |||triacylglycerol lipase|Schizosaccharomyces pombe|...    25   4.9  
SPAC3G9.12 |peg1|cls1|CLASP family microtubule-associated protei...    25   8.6  
SPAC926.04c |hsp90|swo1|heat shock protein Hsp90|Schizosaccharom...    25   8.6  
SPCC825.02 |||glucosidase II Gtb1 |Schizosaccharomyces pombe|chr...    25   8.6  

>SPAC6F6.07c |rps13||40S ribosomal protein S13|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 151

 Score =  145 bits (351), Expect = 4e-36
 Identities = 67/94 (71%), Positives = 77/94 (81%)
 Frame = +3

Query: 48  MGRMHAPGKGISQSALPYRRSVPTWLKLTADDVKEQIFKLGKKGLTPSQIGVMLRDSHGV 227
           MGRMH+ GKGI+ SALPY RS P W K  AD V EQI K  KKG++PSQIGV LRDSHG+
Sbjct: 1   MGRMHSKGKGIASSALPYVRSPPAWCKADADSVVEQILKFSKKGMSPSQIGVTLRDSHGI 60

Query: 228 AQVRFVTGKKILRIMKAMGLAPDLPEDLYYLIKK 329
            QVRF+TG+KI+RI+KA GLAP+LPEDLY LIKK
Sbjct: 61  PQVRFITGQKIMRILKANGLAPELPEDLYNLIKK 94



 Score =  101 bits (243), Expect = 5e-23
 Identities = 46/59 (77%), Positives = 52/59 (88%)
 Frame = +1

Query: 325 RSAVAMRKHLERNRKDKDSKFRLILVESMIHRLARYYKTKSVLPPNWKYESSTASALVA 501
           + AV++RKHLERNRKDKDSKFRLIL+ES IHRLARYY+    LPP WKYES+TASALVA
Sbjct: 93  KKAVSVRKHLERNRKDKDSKFRLILIESRIHRLARYYRKVGALPPTWKYESATASALVA 151


>SPBC685.03 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 452

 Score = 27.1 bits (57), Expect = 1.6
 Identities = 15/57 (26%), Positives = 28/57 (49%)
 Frame = -3

Query: 172 LPSLKICSLTSSAVSFNQVGTLRRYGSADWDIPLPGACIRPILAAFYYIADLTTTLV 2
           L S  +C+ T+S+  F Q+ +   YGS  +     G+    I    Y++ D+ ++ V
Sbjct: 275 LRSFALCNATTSSSLFRQIASYGVYGSFHFSSSESGSFANLIGTNNYFMTDVKSSSV 331


>SPAC1A6.05c |||triacylglycerol lipase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 483

 Score = 25.4 bits (53), Expect = 4.9
 Identities = 12/34 (35%), Positives = 22/34 (64%)
 Frame = +1

Query: 346 KHLERNRKDKDSKFRLILVESMIHRLARYYKTKS 447
           K+  R +K+ D ++  +LVES +H L R+  +K+
Sbjct: 32  KYQWREQKESD-EYDYVLVESRLHELRRHRLSKN 64


>SPAC3G9.12 |peg1|cls1|CLASP family microtubule-associated
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1462

 Score = 24.6 bits (51), Expect = 8.6
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = -2

Query: 122 PGRDTAAVRQRRLGYTLARCVHTTHI 45
           P R T A R+R L YT ++  H+T +
Sbjct: 553 PQRATPASRERVLPYTRSQAFHSTSL 578


>SPAC926.04c |hsp90|swo1|heat shock protein
           Hsp90|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 704

 Score = 24.6 bits (51), Expect = 8.6
 Identities = 10/36 (27%), Positives = 17/36 (47%)
 Frame = -3

Query: 367 SYYVPNVSSWRQHFLIR*YKSSGRSGARPIAFMIRR 260
           S+Y    + W  H  ++ +   G+   R I F+ RR
Sbjct: 286 SFYKSLTNDWEDHLAVKHFSVEGQLEFRAILFVPRR 321


>SPCC825.02 |||glucosidase II Gtb1 |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 506

 Score = 24.6 bits (51), Expect = 8.6
 Identities = 12/54 (22%), Positives = 26/54 (48%)
 Frame = -2

Query: 296 IRSKTHSFHDTQDLFTSNKSDLCNTMRVPEHDTDLGRSKTLFAKFEDLFLNIIS 135
           ++++     D+    ++ K+ L   +   +  TDLG    L   F+DL + ++S
Sbjct: 162 VKARYKEISDSLVAVSAEKTQLSEKVEKMKRSTDLGAEAVLPLDFQDLRVALLS 215


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,197,620
Number of Sequences: 5004
Number of extensions: 44400
Number of successful extensions: 119
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 117
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 119
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 202220600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)