Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0007_I05
(507 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_01_0119 - 951492-951679,951780-951918,952023-952095,952196-95... 137 5e-33
07_03_0978 + 23099690-23100108,23100530-23100564,23100868-231009... 126 8e-30
08_01_0120 - 957365-957552,957642-957780,957847-957970,958398-95... 109 2e-24
02_05_0301 - 27687297-27687547,27687637-27687775,27689150-27689416 76 2e-14
08_02_1332 + 26207164-26207257,26207454-26207530,26207771-262078... 31 0.53
06_03_1207 + 28418473-28421073 30 1.2
07_03_0776 + 21417476-21417691,21417775-21417855,21417941-214183... 29 2.1
06_03_0742 + 24027506-24027721,24028835-24029004,24029893-240300... 27 6.5
04_04_0842 + 28616729-28617078,28617166-28617359,28617416-286175... 27 8.7
>08_01_0119 -
951492-951679,951780-951918,952023-952095,952196-952218
Length = 140
Score = 137 bits (331), Expect = 5e-33
Identities = 62/94 (65%), Positives = 76/94 (80%)
Frame = +3
Query: 48 MGRMHAPGKGISQSALPYRRSVPTWLKLTADDVKEQIFKLGKKGLTPSQIGVMLRDSHGV 227
MGRMH+ GKGIS SA+PY+R+ P+W+K A DV+E I K KKG PSQIGV+LRD HG+
Sbjct: 1 MGRMHSRGKGISSSAIPYKRTPPSWVKTAAADVEEMIMKAAKKGQMPSQIGVVLRDQHGI 60
Query: 228 AQVRFVTGKKILRIMKAMGLAPDLPEDLYYLIKK 329
V+ VTG KILRI+KA GLAP++PEDLY+LIKK
Sbjct: 61 PLVKSVTGSKILRILKAHGLAPEIPEDLYFLIKK 94
Score = 85.8 bits (203), Expect = 2e-17
Identities = 39/48 (81%), Positives = 41/48 (85%)
Frame = +1
Query: 325 RSAVAMRKHLERNRKDKDSKFRLILVESMIHRLARYYKTKSVLPPNWK 468
+ AVA+RKHLERNRKDKDSKFRLILVES IHRLARYYK LPP WK
Sbjct: 93 KKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYKRTKKLPPTWK 140
>07_03_0978 +
23099690-23100108,23100530-23100564,23100868-23100926,
23101269-23101310,23102003-23102065,23102172-23102253,
23102570-23102609,23102657-23102753
Length = 278
Score = 126 bits (305), Expect = 8e-30
Identities = 56/94 (59%), Positives = 74/94 (78%)
Frame = +3
Query: 48 MGRMHAPGKGISQSALPYRRSVPTWLKLTADDVKEQIFKLGKKGLTPSQIGVMLRDSHGV 227
MGRMH+ GKG+S S LPYRR+ P W+K +A +V+E I ++ KKG PSQIG +LRD+H V
Sbjct: 1 MGRMHSSGKGMSCSVLPYRRAAPAWVKTSASEVEEMIVRVAKKGQLPSQIGAILRDAHAV 60
Query: 228 AQVRFVTGKKILRIMKAMGLAPDLPEDLYYLIKK 329
+ VTG KILR++K+ GLAP++PEDLY+LIKK
Sbjct: 61 PLAQGVTGGKILRVLKSRGLAPEVPEDLYFLIKK 94
Score = 73.7 bits (173), Expect = 8e-14
Identities = 33/48 (68%), Positives = 39/48 (81%)
Frame = +1
Query: 325 RSAVAMRKHLERNRKDKDSKFRLILVESMIHRLARYYKTKSVLPPNWK 468
+ AVAMRKHLERNRKDKD+KFRLILVES +HRL RYY+ +P +K
Sbjct: 93 KKAVAMRKHLERNRKDKDTKFRLILVESRVHRLTRYYRLAKKIPAFFK 140
>08_01_0120 -
957365-957552,957642-957780,957847-957970,958398-958486
Length = 179
Score = 109 bits (261), Expect = 2e-24
Identities = 58/103 (56%), Positives = 69/103 (66%), Gaps = 17/103 (16%)
Frame = +3
Query: 72 KGISQSALPYRRSVPTWLKLTADDV-----------------KEQIFKLGKKGLTPSQIG 200
KGIS SALPY+R+ P+WLK A DV +E I K KKG PSQIG
Sbjct: 31 KGISSSALPYKRTPPSWLKTAASDVGAFSFLSLSRLALFHLVEEMIMKAAKKGQMPSQIG 90
Query: 201 VMLRDSHGVAQVRFVTGKKILRIMKAMGLAPDLPEDLYYLIKK 329
V+LRD HG+ V+ VTG KILRI+KA GLAP++PEDLY+LIKK
Sbjct: 91 VVLRDQHGIPLVKSVTGSKILRILKAHGLAPEIPEDLYFLIKK 133
Score = 85.8 bits (203), Expect = 2e-17
Identities = 39/48 (81%), Positives = 41/48 (85%)
Frame = +1
Query: 325 RSAVAMRKHLERNRKDKDSKFRLILVESMIHRLARYYKTKSVLPPNWK 468
+ AVA+RKHLERNRKDKDSKFRLILVES IHRLARYYK LPP WK
Sbjct: 132 KKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYKRTKKLPPTWK 179
>02_05_0301 - 27687297-27687547,27687637-27687775,27689150-27689416
Length = 218
Score = 75.8 bits (178), Expect = 2e-14
Identities = 35/45 (77%), Positives = 37/45 (82%)
Frame = +1
Query: 325 RSAVAMRKHLERNRKDKDSKFRLILVESMIHRLARYYKTKSVLPP 459
+ AVA+RKHLERNRKDKDS FRLILVES IHRL RYYK LPP
Sbjct: 150 KKAVAIRKHLERNRKDKDSSFRLILVESRIHRLVRYYKRTKKLPP 194
Score = 71.3 bits (167), Expect = 4e-13
Identities = 34/63 (53%), Positives = 43/63 (68%)
Frame = +3
Query: 141 DVKEQIFKLGKKGLTPSQIGVMLRDSHGVAQVRFVTGKKILRIMKAMGLAPDLPEDLYYL 320
+V+E I K K G SQIGV+LR HG+ V+ + KIL I+KA GLAP + EDLY+L
Sbjct: 89 EVEEMIMKAAKMGQMSSQIGVVLRHQHGIPLVKSIASSKILHILKAHGLAPKILEDLYFL 148
Query: 321 IKK 329
IKK
Sbjct: 149 IKK 151
>08_02_1332 +
26207164-26207257,26207454-26207530,26207771-26207841,
26208448-26208502,26209066-26209187,26209272-26209353,
26210070-26210160,26210759-26210982,26211294-26211413,
26211523-26211705
Length = 372
Score = 31.1 bits (67), Expect = 0.53
Identities = 15/41 (36%), Positives = 22/41 (53%)
Frame = -2
Query: 125 QPGRDTAAVRQRRLGYTLARCVHTTHIGGFLLYRRSDNDPR 3
+P TAA RQ+ + YT C HT+H+ LY+ + R
Sbjct: 88 KPEESTAAGRQKPVLYTFINCCHTSHLN--FLYQETSQVER 126
>06_03_1207 + 28418473-28421073
Length = 866
Score = 29.9 bits (64), Expect = 1.2
Identities = 26/91 (28%), Positives = 40/91 (43%), Gaps = 3/91 (3%)
Frame = +3
Query: 72 KGISQSALPYRRSVPT---WLKLTADDVKEQIFKLGKKGLTPSQIGVMLRDSHGVAQVRF 242
K + + L Y RSV T W + D + + ++ K GL P+ + R
Sbjct: 657 KHLLKGNLAYVRSVDTSGMWNLIELDITWQLLERMVKHGLNPTVTTYSSLIAGFCKAGRL 716
Query: 243 VTGKKILRIMKAMGLAPDLPEDLYYLIKKCC 335
+L M GL+P+ ED+Y L+ KCC
Sbjct: 717 EEACLLLDHMCGKGLSPN--EDIYTLLIKCC 745
>07_03_0776 +
21417476-21417691,21417775-21417855,21417941-21418342,
21418457-21418621,21418729-21419460,21419542-21419748
Length = 600
Score = 29.1 bits (62), Expect = 2.1
Identities = 14/29 (48%), Positives = 16/29 (55%)
Frame = -3
Query: 313 YKSSGRSGARPIAFMIRRIFLPVTNLTCA 227
Y GR G RP+A M+ R V N TCA
Sbjct: 400 YNVPGRDGYRPVARMLARHDGAVLNFTCA 428
>06_03_0742 +
24027506-24027721,24028835-24029004,24029893-24030052,
24030162-24030455,24031490-24031717,24031827-24032006,
24032079-24032238,24032591-24032617,24033426-24033613,
24034269-24034532,24035123-24035218,24035311-24035399,
24035473-24035620,24035842-24036051,24036141-24036440,
24037906-24038248,24038747-24038952,24039071-24039273,
24040021-24040117,24040148-24040222,24040328-24040602,
24041116-24041256,24041469-24042339,24042481-24042520,
24042605-24043050
Length = 1808
Score = 27.5 bits (58), Expect = 6.5
Identities = 12/38 (31%), Positives = 22/38 (57%)
Frame = +3
Query: 102 RRSVPTWLKLTADDVKEQIFKLGKKGLTPSQIGVMLRD 215
RRS +++ D +KE + GKK L +++ +L+D
Sbjct: 326 RRSTNETRRISDDTIKEMVASSGKKHLLTTEVESILKD 363
>04_04_0842 +
28616729-28617078,28617166-28617359,28617416-28617582,
28617693-28617928,28618049-28618160
Length = 352
Score = 27.1 bits (57), Expect = 8.7
Identities = 13/33 (39%), Positives = 16/33 (48%)
Frame = -3
Query: 181 RPFLPSLKICSLTSSAVSFNQVGTLRRYGSADW 83
R FL L L + V TLR+YG+ DW
Sbjct: 94 RSFLRRLSFQPLRENPVLGPSAATLRKYGALDW 126
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,829,671
Number of Sequences: 37544
Number of extensions: 305650
Number of successful extensions: 827
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 799
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 827
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1083123860
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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