Samia BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0007_I05
         (507 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X91854-1|CAA62965.1|  151|Drosophila melanogaster ribosomal prot...   173   1e-43
X91853-1|CAA62964.1|  151|Drosophila melanogaster ribosomal prot...   173   1e-43
AY058536-1|AAL13765.1|  151|Drosophila melanogaster LD23958p pro...   173   1e-43
AE014134-1471|ABC65883.1|  151|Drosophila melanogaster CG13389-P...   173   1e-43
AE014134-1470|AAF52649.1|  151|Drosophila melanogaster CG13389-P...   173   1e-43
Z19052-1|CAA79496.1|  151|Drosophila melanogaster ribosomal prot...   159   2e-39
AE014296-499|AAF47676.2|  883|Drosophila melanogaster CG32297-PA...    28   8.3  

>X91854-1|CAA62965.1|  151|Drosophila melanogaster ribosomal protein
           S13 protein.
          Length = 151

 Score =  173 bits (421), Expect = 1e-43
 Identities = 79/94 (84%), Positives = 89/94 (94%)
 Frame = +3

Query: 48  MGRMHAPGKGISQSALPYRRSVPTWLKLTADDVKEQIFKLGKKGLTPSQIGVMLRDSHGV 227
           MGRMHAPGKGISQSALPYRR+VP+WLKL ADDVKEQI KLGKKGLTPS+IG++LRDSHGV
Sbjct: 1   MGRMHAPGKGISQSALPYRRTVPSWLKLNADDVKEQIKKLGKKGLTPSKIGIILRDSHGV 60

Query: 228 AQVRFVTGKKILRIMKAMGLAPDLPEDLYYLIKK 329
           AQVRFV G KILRIMK++GL PD+PEDLY++IKK
Sbjct: 61  AQVRFVNGNKILRIMKSVGLKPDIPEDLYHMIKK 94



 Score =  115 bits (276), Expect = 4e-26
 Identities = 54/59 (91%), Positives = 56/59 (94%)
 Frame = +1

Query: 325 RSAVAMRKHLERNRKDKDSKFRLILVESMIHRLARYYKTKSVLPPNWKYESSTASALVA 501
           + AVA+RKHLERNRKDKD KFRLILVES IHRLARYYKTKSVLPPNWKYESSTASALVA
Sbjct: 93  KKAVAIRKHLERNRKDKDGKFRLILVESRIHRLARYYKTKSVLPPNWKYESSTASALVA 151


>X91853-1|CAA62964.1|  151|Drosophila melanogaster ribosomal protein
           S13 protein.
          Length = 151

 Score =  173 bits (421), Expect = 1e-43
 Identities = 79/94 (84%), Positives = 89/94 (94%)
 Frame = +3

Query: 48  MGRMHAPGKGISQSALPYRRSVPTWLKLTADDVKEQIFKLGKKGLTPSQIGVMLRDSHGV 227
           MGRMHAPGKGISQSALPYRR+VP+WLKL ADDVKEQI KLGKKGLTPS+IG++LRDSHGV
Sbjct: 1   MGRMHAPGKGISQSALPYRRTVPSWLKLNADDVKEQIKKLGKKGLTPSKIGIILRDSHGV 60

Query: 228 AQVRFVTGKKILRIMKAMGLAPDLPEDLYYLIKK 329
           AQVRFV G KILRIMK++GL PD+PEDLY++IKK
Sbjct: 61  AQVRFVNGNKILRIMKSVGLKPDIPEDLYHMIKK 94



 Score =  115 bits (276), Expect = 4e-26
 Identities = 54/59 (91%), Positives = 56/59 (94%)
 Frame = +1

Query: 325 RSAVAMRKHLERNRKDKDSKFRLILVESMIHRLARYYKTKSVLPPNWKYESSTASALVA 501
           + AVA+RKHLERNRKDKD KFRLILVES IHRLARYYKTKSVLPPNWKYESSTASALVA
Sbjct: 93  KKAVAIRKHLERNRKDKDGKFRLILVESRIHRLARYYKTKSVLPPNWKYESSTASALVA 151


>AY058536-1|AAL13765.1|  151|Drosophila melanogaster LD23958p
           protein.
          Length = 151

 Score =  173 bits (421), Expect = 1e-43
 Identities = 79/94 (84%), Positives = 89/94 (94%)
 Frame = +3

Query: 48  MGRMHAPGKGISQSALPYRRSVPTWLKLTADDVKEQIFKLGKKGLTPSQIGVMLRDSHGV 227
           MGRMHAPGKGISQSALPYRR+VP+WLKL ADDVKEQI KLGKKGLTPS+IG++LRDSHGV
Sbjct: 1   MGRMHAPGKGISQSALPYRRTVPSWLKLNADDVKEQIKKLGKKGLTPSKIGIILRDSHGV 60

Query: 228 AQVRFVTGKKILRIMKAMGLAPDLPEDLYYLIKK 329
           AQVRFV G KILRIMK++GL PD+PEDLY++IKK
Sbjct: 61  AQVRFVNGNKILRIMKSVGLKPDIPEDLYHMIKK 94



 Score =  115 bits (276), Expect = 4e-26
 Identities = 54/59 (91%), Positives = 56/59 (94%)
 Frame = +1

Query: 325 RSAVAMRKHLERNRKDKDSKFRLILVESMIHRLARYYKTKSVLPPNWKYESSTASALVA 501
           + AVA+RKHLERNRKDKD KFRLILVES IHRLARYYKTKSVLPPNWKYESSTASALVA
Sbjct: 93  KKAVAIRKHLERNRKDKDGKFRLILVESRIHRLARYYKTKSVLPPNWKYESSTASALVA 151


>AE014134-1471|ABC65883.1|  151|Drosophila melanogaster CG13389-PB,
           isoform B protein.
          Length = 151

 Score =  173 bits (421), Expect = 1e-43
 Identities = 79/94 (84%), Positives = 89/94 (94%)
 Frame = +3

Query: 48  MGRMHAPGKGISQSALPYRRSVPTWLKLTADDVKEQIFKLGKKGLTPSQIGVMLRDSHGV 227
           MGRMHAPGKGISQSALPYRR+VP+WLKL ADDVKEQI KLGKKGLTPS+IG++LRDSHGV
Sbjct: 1   MGRMHAPGKGISQSALPYRRTVPSWLKLNADDVKEQIKKLGKKGLTPSKIGIILRDSHGV 60

Query: 228 AQVRFVTGKKILRIMKAMGLAPDLPEDLYYLIKK 329
           AQVRFV G KILRIMK++GL PD+PEDLY++IKK
Sbjct: 61  AQVRFVNGNKILRIMKSVGLKPDIPEDLYHMIKK 94



 Score =  115 bits (276), Expect = 4e-26
 Identities = 54/59 (91%), Positives = 56/59 (94%)
 Frame = +1

Query: 325 RSAVAMRKHLERNRKDKDSKFRLILVESMIHRLARYYKTKSVLPPNWKYESSTASALVA 501
           + AVA+RKHLERNRKDKD KFRLILVES IHRLARYYKTKSVLPPNWKYESSTASALVA
Sbjct: 93  KKAVAIRKHLERNRKDKDGKFRLILVESRIHRLARYYKTKSVLPPNWKYESSTASALVA 151


>AE014134-1470|AAF52649.1|  151|Drosophila melanogaster CG13389-PA,
           isoform A protein.
          Length = 151

 Score =  173 bits (421), Expect = 1e-43
 Identities = 79/94 (84%), Positives = 89/94 (94%)
 Frame = +3

Query: 48  MGRMHAPGKGISQSALPYRRSVPTWLKLTADDVKEQIFKLGKKGLTPSQIGVMLRDSHGV 227
           MGRMHAPGKGISQSALPYRR+VP+WLKL ADDVKEQI KLGKKGLTPS+IG++LRDSHGV
Sbjct: 1   MGRMHAPGKGISQSALPYRRTVPSWLKLNADDVKEQIKKLGKKGLTPSKIGIILRDSHGV 60

Query: 228 AQVRFVTGKKILRIMKAMGLAPDLPEDLYYLIKK 329
           AQVRFV G KILRIMK++GL PD+PEDLY++IKK
Sbjct: 61  AQVRFVNGNKILRIMKSVGLKPDIPEDLYHMIKK 94



 Score =  115 bits (276), Expect = 4e-26
 Identities = 54/59 (91%), Positives = 56/59 (94%)
 Frame = +1

Query: 325 RSAVAMRKHLERNRKDKDSKFRLILVESMIHRLARYYKTKSVLPPNWKYESSTASALVA 501
           + AVA+RKHLERNRKDKD KFRLILVES IHRLARYYKTKSVLPPNWKYESSTASALVA
Sbjct: 93  KKAVAIRKHLERNRKDKDGKFRLILVESRIHRLARYYKTKSVLPPNWKYESSTASALVA 151


>Z19052-1|CAA79496.1|  151|Drosophila melanogaster ribosomal protein
           S17 protein.
          Length = 151

 Score =  159 bits (386), Expect = 2e-39
 Identities = 73/94 (77%), Positives = 84/94 (89%)
 Frame = +3

Query: 48  MGRMHAPGKGISQSALPYRRSVPTWLKLTADDVKEQIFKLGKKGLTPSQIGVMLRDSHGV 227
           MGRMHAPGKGISQSALPYRR+VP+WLKL ADDVKEQI K G++G    QIG++LRDSHGV
Sbjct: 1   MGRMHAPGKGISQSALPYRRTVPSWLKLNADDVKEQIKKAGQEGSDSLQIGIILRDSHGV 60

Query: 228 AQVRFVTGKKILRIMKAMGLAPDLPEDLYYLIKK 329
           AQVRFV G KILRIMK++GL PD+PEDLY++IKK
Sbjct: 61  AQVRFVNGNKILRIMKSVGLKPDIPEDLYHMIKK 94



 Score =  115 bits (276), Expect = 4e-26
 Identities = 54/59 (91%), Positives = 56/59 (94%)
 Frame = +1

Query: 325 RSAVAMRKHLERNRKDKDSKFRLILVESMIHRLARYYKTKSVLPPNWKYESSTASALVA 501
           + AVA+RKHLERNRKDKD KFRLILVES IHRLARYYKTKSVLPPNWKYESSTASALVA
Sbjct: 93  KKAVAIRKHLERNRKDKDGKFRLILVESRIHRLARYYKTKSVLPPNWKYESSTASALVA 151


>AE014296-499|AAF47676.2|  883|Drosophila melanogaster CG32297-PA
           protein.
          Length = 883

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 15/50 (30%), Positives = 24/50 (48%), Gaps = 3/50 (6%)
 Frame = +3

Query: 84  QSALPYRRSVPTWLKLTADDVKEQIF---KLGKKGLTPSQIGVMLRDSHG 224
           Q  +PYR  +  WL+   DD+ E +     +GK+ L  +  G+    S G
Sbjct: 63  QKGIPYRPQLSEWLRHKPDDLNEWLLVPCPVGKRCLVVASKGITKAYSKG 112


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,578,443
Number of Sequences: 53049
Number of extensions: 516025
Number of successful extensions: 1206
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1169
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1206
length of database: 24,988,368
effective HSP length: 80
effective length of database: 20,744,448
effective search space used: 1825511424
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)