Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0007_I04
         (565 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_0578 + 22473492-22473784,22473795-22474559,22474673-22475033     29   3.4  
01_06_0314 - 28410897-28410902,28410995-28411054,28411149-28411697     28   5.9  
11_05_0021 - 18438030-18438086,18438120-18438397,18438660-18438846     27   7.8  
05_07_0146 + 28018236-28018580,28018670-28018777,28018984-280191...    27   7.8  
03_06_0399 - 33632811-33633107,33633236-33633385,33633705-336340...    27   7.8  
02_04_0515 + 23582105-23583519,23583613-23583741,23583835-235839...    27   7.8  

>06_03_0578 + 22473492-22473784,22473795-22474559,22474673-22475033
          Length = 472

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 31/132 (23%), Positives = 52/132 (39%), Gaps = 1/132 (0%)
 Frame = +3

Query: 18  SSALIVFCTYNLFTNVTMSEAFFDEYDYYNFDHDKHIFTGHGGKQRTKREATEHTNHFDP 197
           + +L+++  + L +    SEA   EYD Y     + +      +   KR+  E TN F+ 
Sbjct: 13  AGSLVLYAVFLLLSAAATSEANIGEYDEY--WQKRKLMADAAAEATYKRDPFEVTNSFNR 70

Query: 198 SGHSRKIVTKLVNTENNKKSNKQ*M*R*INTTMACRRNITELPSERRTLWRIP-EEVAGR 374
           + H            +  +S  Q + R          N++E  S RR L     ++ AG 
Sbjct: 71  AVH-----------RHADRSFNQSIVRIAQLVRTYDSNVSEEESGRRELAMTKRKKFAGP 119

Query: 375 CPAQRSTEHPWR 410
           C A    +  WR
Sbjct: 120 CKATNPIDRCWR 131


>01_06_0314 - 28410897-28410902,28410995-28411054,28411149-28411697
          Length = 204

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 11/33 (33%), Positives = 15/33 (45%)
 Frame = +3

Query: 315 TELPSERRTLWRIPEEVAGRCPAQRSTEHPWRL 413
           T  P + +   R  + V G C  QR  + PW L
Sbjct: 76  TPSPDKEKAAHRSTDGVGGGCSPQRGPQRPWNL 108


>11_05_0021 - 18438030-18438086,18438120-18438397,18438660-18438846
          Length = 173

 Score = 27.5 bits (58), Expect = 7.8
 Identities = 15/47 (31%), Positives = 18/47 (38%)
 Frame = +3

Query: 339 TLWRIPEEVAGRCPAQRSTEHPWRLLLTQGFYIAHHTNRIRCRTRQR 479
           TL  +    +   P  R   HP RL    G  +AHH    R   R R
Sbjct: 48  TLTALANSASASIPTGRGRTHPLRLDGGSGHQLAHHAVDARALVRAR 94


>05_07_0146 +
           28018236-28018580,28018670-28018777,28018984-28019148,
           28019269-28019736,28019823-28019936,28020038-28020715
          Length = 625

 Score = 27.5 bits (58), Expect = 7.8
 Identities = 12/30 (40%), Positives = 17/30 (56%), Gaps = 2/30 (6%)
 Frame = +3

Query: 105 NFDHDKHIFTGHGGKQR--TKREATEHTNH 188
           +FDH  H    HGG++R  +  EA  H +H
Sbjct: 275 HFDHHNHHHPIHGGRERGSSPAEADHHRHH 304


>03_06_0399 -
           33632811-33633107,33633236-33633385,33633705-33634029,
           33635315-33635982,33636967-33637212,33637405-33637545,
           33637807-33637856,33637943-33638060,33638304-33638910,
           33639339-33639463,33639813-33639869,33639952-33640023,
           33640100-33640232,33640305-33640428,33640522-33640576,
           33640672-33641322
          Length = 1272

 Score = 27.5 bits (58), Expect = 7.8
 Identities = 11/17 (64%), Positives = 13/17 (76%)
 Frame = -2

Query: 528 GRGTKIDLAGNTWFILS 478
           GRG +  L GNTWF+LS
Sbjct: 822 GRGGRSFLFGNTWFLLS 838


>02_04_0515 +
           23582105-23583519,23583613-23583741,23583835-23583970,
           23584051-23584139,23584236-23584347,23584427-23584533,
           23584630-23584723
          Length = 693

 Score = 27.5 bits (58), Expect = 7.8
 Identities = 14/29 (48%), Positives = 18/29 (62%)
 Frame = +3

Query: 324 PSERRTLWRIPEEVAGRCPAQRSTEHPWR 410
           PSE RT  R P EV+G   ++RS E P +
Sbjct: 76  PSEGRTEDREPGEVSGGSGSERSGERPMK 104


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,540,930
Number of Sequences: 37544
Number of extensions: 314632
Number of successful extensions: 738
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 720
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 738
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1293275844
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)