Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0007_I04
         (565 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z22181-7|CAA80189.2|   62|Caenorhabditis elegans Hypothetical pr...    31   0.43 
U41993-5|AAA83447.2|  451|Caenorhabditis elegans Hypothetical pr...    31   0.76 
U41026-2|AAM51523.1|  295|Caenorhabditis elegans Hypothetical pr...    28   4.0  
AF022976-4|AAC69083.2|  345|Caenorhabditis elegans Serpentine re...    28   5.3  
Z81540-12|CAB04396.2|  149|Caenorhabditis elegans Hypothetical p...    27   7.0  

>Z22181-7|CAA80189.2|   62|Caenorhabditis elegans Hypothetical
           protein ZK632.9 protein.
          Length = 62

 Score = 31.5 bits (68), Expect = 0.43
 Identities = 14/38 (36%), Positives = 20/38 (52%)
 Frame = +3

Query: 141 GGKQRTKREATEHTNHFDPSGHSRKIVTKLVNTENNKK 254
           G  +RTK +  EH +   P G +RK+V    N E  +K
Sbjct: 23  GSGKRTKSDRVEHKHASQPGGDTRKVVQTASNGEAKRK 60


>U41993-5|AAA83447.2|  451|Caenorhabditis elegans Hypothetical
           protein F44A2.2 protein.
          Length = 451

 Score = 30.7 bits (66), Expect = 0.76
 Identities = 15/42 (35%), Positives = 22/42 (52%)
 Frame = +3

Query: 6   RKLLSSALIVFCTYNLFTNVTMSEAFFDEYDYYNFDHDKHIF 131
           R+L +S L VFC  +    +T  +AFF+    Y F+    IF
Sbjct: 46  RRLATSRLAVFCEKSHVERLTDCDAFFESTSEYYFERSPIIF 87


>U41026-2|AAM51523.1|  295|Caenorhabditis elegans Hypothetical
           protein C28G1.6 protein.
          Length = 295

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 15/36 (41%), Positives = 19/36 (52%), Gaps = 2/36 (5%)
 Frame = -2

Query: 531 NGRGTKIDLAGNTWFIL--SVASFYIVFCLCDEQCR 430
           +G+  KID AG TW      VA F  V   CD +C+
Sbjct: 78  SGKNKKIDTAGPTWCNAHQEVAKFICVNTDCDVKCK 113


>AF022976-4|AAC69083.2|  345|Caenorhabditis elegans Serpentine
           receptor, class h protein37 protein.
          Length = 345

 Score = 27.9 bits (59), Expect = 5.3
 Identities = 9/14 (64%), Positives = 13/14 (92%)
 Frame = -2

Query: 270 SIVYWTFCCSPYSL 229
           SI+Y+TFCC P+S+
Sbjct: 253 SILYFTFCCVPFSV 266


>Z81540-12|CAB04396.2|  149|Caenorhabditis elegans Hypothetical
           protein F46B3.15 protein.
          Length = 149

 Score = 27.5 bits (58), Expect = 7.0
 Identities = 11/32 (34%), Positives = 16/32 (50%)
 Frame = -1

Query: 217 IFLECPEGSK*FVCSVASRLVRCLPPCPVKMC 122
           +F  CP+ S   V    ++ V   PPC +K C
Sbjct: 88  VFTTCPKMSSCIVVDGKAKCVPRSPPCTIKQC 119


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,364,490
Number of Sequences: 27780
Number of extensions: 280026
Number of successful extensions: 728
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 710
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 728
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1166125180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)