Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0007_I03
(337 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC19G7.03c |rps3002|rps30-2, rps30|40S ribosomal protein S30|S... 51 4e-08
SPAC19B12.04 |rps3001|rps30-1|40S ribosomal protein S30|Schizosa... 51 4e-08
SPBC409.11 |meu18||sequence orphan|Schizosaccharomyces pombe|chr... 27 1.0
SPBC660.17c |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 26 1.3
SPAC4D7.01c |sec71|sec7a, SPAP8A3.15c|Sec7 domain|Schizosaccharo... 26 1.3
SPBC19C7.11 |||ClC chloride channel |Schizosaccharomyces pombe|c... 26 1.8
SPAC589.08c |dam1||DASH complex subunit Dam1|Schizosaccharomyces... 25 2.3
SPAPB17E12.12c |||mitochondrial transporter|Schizosaccharomyces ... 25 3.1
SPAC17G6.10 |ssr1||SWI/SNF and RSC complex subunit Ssr1|Schizosa... 25 4.1
SPAC140.03 |arb1||argonaute binding protein 1|Schizosaccharomyce... 25 4.1
SPAC23E2.03c |ste7||meiotic suppressor protein Ste7|Schizosaccha... 24 5.4
SPBC29B5.02c |isp4||OPT oligopeptide transporter family |Schizos... 24 7.1
SPCC1682.03c |mug174||meiotically upregulated gene Mug174|Schizo... 24 7.1
SPAC3G6.01 |hrp3||ATP-dependent DNA helicase Hrp3|Schizosaccharo... 23 9.4
SPAC13G6.06c |||glycine cleavage complex subunit P|Schizosacchar... 23 9.4
SPAC821.13c ||SPAC955.01c|P-type ATPase |Schizosaccharomyces pom... 23 9.4
>SPBC19G7.03c |rps3002|rps30-2, rps30|40S ribosomal protein
S30|Schizosaccharomyces pombe|chr 2|||Manual
Length = 61
Score = 51.2 bits (117), Expect = 4e-08
Identities = 28/60 (46%), Positives = 31/60 (51%)
Frame = +1
Query: 85 GKVHGSLARAGKVKGQTPXXXXXXXXXXXXXXXXXXIQYNRRFVNVVQTFGRRRGPNSNS 264
GKVHGSLARAGKVK QTP + Y RRFVNV G +R N +S
Sbjct: 2 GKVHGSLARAGKVKSQTPKVEKQEKPKQPKGRAYKRLLYVRRFVNVTNMVGGKRRMNPSS 61
>SPAC19B12.04 |rps3001|rps30-1|40S ribosomal protein
S30|Schizosaccharomyces pombe|chr 1|||Manual
Length = 61
Score = 51.2 bits (117), Expect = 4e-08
Identities = 28/60 (46%), Positives = 31/60 (51%)
Frame = +1
Query: 85 GKVHGSLARAGKVKGQTPXXXXXXXXXXXXXXXXXXIQYNRRFVNVVQTFGRRRGPNSNS 264
GKVHGSLARAGKVK QTP + Y RRFVNV G +R N +S
Sbjct: 2 GKVHGSLARAGKVKSQTPKVEKQEKPKQPKGRAYKRLLYVRRFVNVTNMVGGKRRMNPSS 61
>SPBC409.11 |meu18||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 553
Score = 26.6 bits (56), Expect = 1.0
Identities = 13/40 (32%), Positives = 22/40 (55%)
Frame = -3
Query: 269 FYELELGPRRRPKVWTTFTNLLLYWILRLARPVLFFFFCC 150
FYEL RP + + LL+ +++ ++ +L FFF C
Sbjct: 6 FYELYNIKNIRPLIPSFHVCLLIMFLILYSQEILSFFFMC 45
>SPBC660.17c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 172
Score = 26.2 bits (55), Expect = 1.3
Identities = 14/40 (35%), Positives = 21/40 (52%)
Frame = -2
Query: 336 FFFFFLKQKRCYICIVVLFTELILRVRVGSTTAAEGLDNV 217
FF+ FL R +C + +FTE+ ST + E LD +
Sbjct: 129 FFYAFLNI-RTLVCGITIFTEIARYSMYHSTLSVEKLDEM 167
>SPAC4D7.01c |sec71|sec7a, SPAP8A3.15c|Sec7 domain|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1811
Score = 26.2 bits (55), Expect = 1.3
Identities = 14/37 (37%), Positives = 16/37 (43%)
Frame = -3
Query: 125 LTLPARARDPCTLPPRRGTVRSSSVDESSDTRHESSR 15
+TLP RDP P V E+S HE SR
Sbjct: 1562 MTLPIELRDPSLYPQVNSDSSLEDVKENSFRPHEISR 1598
>SPBC19C7.11 |||ClC chloride channel |Schizosaccharomyces pombe|chr
2|||Manual
Length = 812
Score = 25.8 bits (54), Expect = 1.8
Identities = 9/22 (40%), Positives = 14/22 (63%)
Frame = -3
Query: 173 VLFFFFCCFSTLGVWPLTLPAR 108
+++ FFCC S +GV + P R
Sbjct: 331 IVYSFFCCLSAVGVLHMLNPFR 352
>SPAC589.08c |dam1||DASH complex subunit Dam1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 155
Score = 25.4 bits (53), Expect = 2.3
Identities = 13/22 (59%), Positives = 15/22 (68%), Gaps = 1/22 (4%)
Frame = +1
Query: 268 NQFCK*YNNANIT-SFLLQKKK 330
N FC Y NA ++ SFLLQ KK
Sbjct: 78 NAFCVDYENAPLSESFLLQAKK 99
>SPAPB17E12.12c |||mitochondrial transporter|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 317
Score = 25.0 bits (52), Expect = 3.1
Identities = 12/33 (36%), Positives = 19/33 (57%)
Frame = -1
Query: 181 HVRSSSFSFAVSLLWASGL*LYQHEPGIRALYH 83
+V ++S LW++ L + QHE G ALY+
Sbjct: 159 NVANNSLKVKPLTLWSTLLYIVQHEGGYPALYN 191
>SPAC17G6.10 |ssr1||SWI/SNF and RSC complex subunit
Ssr1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 527
Score = 24.6 bits (51), Expect = 4.1
Identities = 13/43 (30%), Positives = 20/43 (46%), Gaps = 1/43 (2%)
Frame = +3
Query: 129 PD-AQSRETAKEKEEDRTC*AQDPIQQEIRERCPDLRPPSWTQ 254
PD AQ E K+ED +D ++ + + P + P W Q
Sbjct: 17 PDSAQPMELDVSKKEDTEPEVRDEAKEFLLSQLPQVEVPEWAQ 59
>SPAC140.03 |arb1||argonaute binding protein 1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 399
Score = 24.6 bits (51), Expect = 4.1
Identities = 13/33 (39%), Positives = 21/33 (63%)
Frame = +1
Query: 16 LEDSCLVSELSSTELDLTVPLLGGKVHGSLARA 114
+ D+CL++E + TEL ++ L K+ G L RA
Sbjct: 199 IRDACLLAEQAETEL-ISNKRLSTKLPGRLQRA 230
>SPAC23E2.03c |ste7||meiotic suppressor protein
Ste7|Schizosaccharomyces pombe|chr 1|||Manual
Length = 569
Score = 24.2 bits (50), Expect = 5.4
Identities = 11/41 (26%), Positives = 17/41 (41%)
Frame = -3
Query: 128 PLTLPARARDPCTLPPRRGTVRSSSVDESSDTRHESSRGAP 6
PL++ +R C P S+ D S+ + S G P
Sbjct: 302 PLSISSRPSPCCPSTPSSAVTLSNGFDSQSNAYNNSGTGPP 342
>SPBC29B5.02c |isp4||OPT oligopeptide transporter family
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 785
Score = 23.8 bits (49), Expect = 7.1
Identities = 9/31 (29%), Positives = 17/31 (54%)
Frame = -3
Query: 254 LGPRRRPKVWTTFTNLLLYWILRLARPVLFF 162
+GP+R T+T L +W+ + +LF+
Sbjct: 629 IGPKRMFSGKNTYTGLQYFWLAGVLGTILFW 659
>SPCC1682.03c |mug174||meiotically upregulated gene
Mug174|Schizosaccharomyces pombe|chr 3|||Manual
Length = 626
Score = 23.8 bits (49), Expect = 7.1
Identities = 12/18 (66%), Positives = 13/18 (72%)
Frame = -3
Query: 71 TVRSSSVDESSDTRHESS 18
T SSS DESSDT +SS
Sbjct: 285 TSDSSSGDESSDTARQSS 302
>SPAC3G6.01 |hrp3||ATP-dependent DNA helicase Hrp3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1388
Score = 23.4 bits (48), Expect = 9.4
Identities = 9/20 (45%), Positives = 15/20 (75%)
Frame = -1
Query: 64 GRAQLMKALTQDMSPQGAHL 5
GRA+L+K LT+ ++ G H+
Sbjct: 1324 GRAELVKLLTECLTTIGKHI 1343
>SPAC13G6.06c |||glycine cleavage complex subunit
P|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1017
Score = 23.4 bits (48), Expect = 9.4
Identities = 14/31 (45%), Positives = 17/31 (54%)
Frame = +3
Query: 147 ETAKEKEEDRTC*AQDPIQQEIRERCPDLRP 239
E+ E DR C A I+QEIRE L+P
Sbjct: 921 ESESMYEMDRFCDALISIRQEIREIEEGLQP 951
>SPAC821.13c ||SPAC955.01c|P-type ATPase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1562
Score = 23.4 bits (48), Expect = 9.4
Identities = 12/29 (41%), Positives = 18/29 (62%), Gaps = 1/29 (3%)
Frame = +2
Query: 209 DS*TLSRPSAAVVDPTLTRKINS-VNNTT 292
+S + SRPS P+L+R+ N +NN T
Sbjct: 908 NSQSTSRPSLTASRPSLSRRRNDYINNVT 936
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,339,228
Number of Sequences: 5004
Number of extensions: 23098
Number of successful extensions: 73
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 69
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 71
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 95984434
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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