Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0007_I03
(337 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_01_0507 + 3655570-3655573,3655648-3655832 67 3e-12
02_05_0690 - 30943184-30943305,30944048-30944459,30944549-309446... 28 2.2
02_01_0130 - 938530-939990 27 3.8
12_02_0206 - 15518283-15518342,15518432-15518539,15519088-155191... 27 5.0
12_01_1097 + 11531899-11532277,11532482-11533287,11534015-115342... 27 5.0
04_04_1188 + 31579833-31579914,31580001-31580176,31580822-315809... 27 5.0
02_05_0895 - 32593155-32593190,32594228-32594279,32594544-325945... 27 5.0
07_01_0233 - 1703602-1705623 26 8.7
07_01_0059 - 439518-439646,439767-439885,440003-440241,440320-44... 26 8.7
02_01_0099 + 726576-727105,727899-728048,728510-728635,728726-72... 26 8.7
>06_01_0507 + 3655570-3655573,3655648-3655832
Length = 62
Score = 67.3 bits (157), Expect = 3e-12
Identities = 32/59 (54%), Positives = 37/59 (62%)
Frame = +1
Query: 85 GKVHGSLARAGKVKGQTPXXXXXXXXXXXXXXXXXXIQYNRRFVNVVQTFGRRRGPNSN 261
GKVHGSLARAGKV+GQTP +QYNRRFV V FG++RGPNS+
Sbjct: 2 GKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSS 60
>02_05_0690 -
30943184-30943305,30944048-30944459,30944549-30944610,
30944724-30944787,30944880-30944947,30945039-30945168,
30945276-30945341,30945794-30946369
Length = 499
Score = 27.9 bits (59), Expect = 2.2
Identities = 13/29 (44%), Positives = 16/29 (55%)
Frame = -3
Query: 227 WTTFTNLLLYWILRLARPVLFFFFCCFST 141
W + +L WIL PVL FFC FS+
Sbjct: 66 WGSLVHLGDSWILAFWFPVLTEFFCAFSS 94
>02_01_0130 - 938530-939990
Length = 486
Score = 27.1 bits (57), Expect = 3.8
Identities = 14/35 (40%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Frame = -3
Query: 119 LPARARDPCTLPPRRGTVRSSSV-DESSDTRHESS 18
LP+ +R CT P G+V V D + T HE+S
Sbjct: 32 LPSTSRISCTEPSNGGSVMELEVMDRNEQTYHENS 66
>12_02_0206 -
15518283-15518342,15518432-15518539,15519088-15519172,
15519788-15519852
Length = 105
Score = 26.6 bits (56), Expect = 5.0
Identities = 15/66 (22%), Positives = 28/66 (42%)
Frame = -3
Query: 245 RRRPKVWTTFTNLLLYWILRLARPVLFFFFCCFSTLGVWPLTLPARARDPCTLPPRRGTV 66
+ R +W F + + + R ++FFFFC S L + ++ + + P +
Sbjct: 8 KSREDMWQRFPSKITLFPPSHIRSLIFFFFCSESDLVIQIISKEKKEKRPMGIFEAYAEA 67
Query: 65 RSSSVD 48
R S D
Sbjct: 68 RKSGKD 73
>12_01_1097 +
11531899-11532277,11532482-11533287,11534015-11534284,
11534939-11535454
Length = 656
Score = 26.6 bits (56), Expect = 5.0
Identities = 13/32 (40%), Positives = 18/32 (56%)
Frame = -3
Query: 125 LTLPARARDPCTLPPRRGTVRSSSVDESSDTR 30
L PA+ + P PR+G+ SSS + S TR
Sbjct: 379 LEQPAQRKPPSAPKPRKGSGPSSSPHDESSTR 410
>04_04_1188 +
31579833-31579914,31580001-31580176,31580822-31580923,
31581015-31581245,31581821-31581922,31582092-31582184,
31582275-31582379,31582455-31582514,31582621-31582698,
31582778-31582924,31583011-31583109,31583178-31583267,
31583360-31583451,31583529-31583646,31583783-31583871,
31583998-31584088,31584203-31584294,31584442-31584749,
31584866-31584897
Length = 728
Score = 26.6 bits (56), Expect = 5.0
Identities = 13/33 (39%), Positives = 17/33 (51%)
Frame = -3
Query: 116 PARARDPCTLPPRRGTVRSSSVDESSDTRHESS 18
PA+ P P + T + S DES D+ ESS
Sbjct: 298 PAKPTIPAKRPLTKDTKKGQSKDESEDSSDESS 330
>02_05_0895 -
32593155-32593190,32594228-32594279,32594544-32594584,
32594795-32594906,32595195-32595268,32595349-32595587,
32595710-32596678,32596725-32596878,32596957-32597244,
32597393-32597534,32598679-32598752,32598870-32598890
Length = 733
Score = 26.6 bits (56), Expect = 5.0
Identities = 12/30 (40%), Positives = 16/30 (53%)
Frame = -3
Query: 230 VWTTFTNLLLYWILRLARPVLFFFFCCFST 141
+W + LLY I R R +L+ F FST
Sbjct: 618 IWGSLWKDLLYQIFRAIRSILYGFVAFFST 647
>07_01_0233 - 1703602-1705623
Length = 673
Score = 25.8 bits (54), Expect = 8.7
Identities = 9/30 (30%), Positives = 20/30 (66%)
Frame = -2
Query: 318 KQKRCYICIVVLFTELILRVRVGSTTAAEG 229
+ +RC++ ++ FT +++ + S+TAA G
Sbjct: 6 ENRRCFLAVLHFFTIILIIITFPSSTAAIG 35
>07_01_0059 -
439518-439646,439767-439885,440003-440241,440320-440376,
440480-440566,440664-441208,441967-442026,443552-443935,
444049-444114
Length = 561
Score = 25.8 bits (54), Expect = 8.7
Identities = 11/30 (36%), Positives = 18/30 (60%)
Frame = -3
Query: 218 FTNLLLYWILRLARPVLFFFFCCFSTLGVW 129
+TNL+ ++I+ L +LF F T G+W
Sbjct: 493 WTNLVAFYIVGLPLSILFGFKLGLQTKGLW 522
>02_01_0099 +
726576-727105,727899-728048,728510-728635,728726-729714,
729776-729818,730101-730218,730743-730853
Length = 688
Score = 25.8 bits (54), Expect = 8.7
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = -3
Query: 167 FFFFCCFSTLGVWPLTLPARA 105
+FFF CF T G+ L LP R+
Sbjct: 594 YFFFSCFLTRGMRFLILPNRS 614
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,868,632
Number of Sequences: 37544
Number of extensions: 158786
Number of successful extensions: 487
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 475
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 486
length of database: 14,793,348
effective HSP length: 72
effective length of database: 12,090,180
effective search space used: 471517020
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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