Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0007_I02
         (415 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC162.04c |wtf13||wtf element Wtf13|Schizosaccharomyces pombe|...    27   1.5  
SPBC23E6.02 |||ATP-dependent DNA helicase |Schizosaccharomyces p...    25   4.7  
SPCC622.21 |wtf12||wtf element Wtf12|Schizosaccharomyces pombe|c...    25   4.7  
SPAC343.04c |gnr1||heterotrimeric G protein beta subunit Gnr1|Sc...    25   6.1  
SPBC14F5.03c |kap123||karyopherin Kap123|Schizosaccharomyces pom...    24   8.1  
SPBC691.01 |||palmitoyltransferase |Schizosaccharomyces pombe|ch...    24   8.1  
SPBC3E7.05c |||conserved eukaryotic protein|Schizosaccharomyces ...    24   8.1  

>SPCC162.04c |wtf13||wtf element Wtf13|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 418

 Score = 26.6 bits (56), Expect = 1.5
 Identities = 12/42 (28%), Positives = 24/42 (57%)
 Frame = +2

Query: 65  GPVKETAKQKRERKQDFAKSRQQIHTIVLPTLGVIFLLICFY 190
           GP  E A    ER+Q+F  S   I++++   + V+ +++ F+
Sbjct: 61  GPT-EIANPNVERRQEFKDSHPNIYSLLRLLISVLAVIVVFF 101


>SPBC23E6.02 |||ATP-dependent DNA helicase |Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1040

 Score = 25.0 bits (52), Expect = 4.7
 Identities = 22/83 (26%), Positives = 35/83 (42%)
 Frame = -1

Query: 373  WNTIDITKL*QFTQSKKL*INSQPYHPIYLYPTWVYFTLIITVYFNFLGVLHRRWSRLYV 194
            W T   TK+ +   + K  I  QP   I ++  +V F  + TV F   G+ +  ++    
Sbjct: 861  WTTS--TKIEKALNAVKEIIKKQPTDKILIFSQFVSFLELFTVPFRQEGIKYLMYTGGLS 918

Query: 193  NIEANQQEYNT*CRENYSVNLLT 125
              E NQ   N     N  V L++
Sbjct: 919  TAERNQALINFEVDPNVRVLLIS 941


>SPCC622.21 |wtf12||wtf element Wtf12|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 197

 Score = 25.0 bits (52), Expect = 4.7
 Identities = 12/42 (28%), Positives = 23/42 (54%)
 Frame = +2

Query: 65  GPVKETAKQKRERKQDFAKSRQQIHTIVLPTLGVIFLLICFY 190
           GP  ETA    ER+Q+F      I++++   + V+ + + F+
Sbjct: 62  GPT-ETANPNVERRQEFKDLHPNIYSLLRLLIAVLAVSVVFF 102


>SPAC343.04c |gnr1||heterotrimeric G protein beta subunit
           Gnr1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 507

 Score = 24.6 bits (51), Expect = 6.1
 Identities = 7/13 (53%), Positives = 9/13 (69%)
 Frame = -3

Query: 413 HTFHDMSTEIWNV 375
           H FHD S E+W +
Sbjct: 207 HVFHDHSDEVWQI 219


>SPBC14F5.03c |kap123||karyopherin Kap123|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1067

 Score = 24.2 bits (50), Expect = 8.1
 Identities = 11/34 (32%), Positives = 18/34 (52%)
 Frame = +1

Query: 130 ANSHYSSPYIRCYILADLLLCLRKDETSVYAIRL 231
           ANS      IRC  L+ ++ C+R     + A++L
Sbjct: 261 ANSKQVDDEIRCMALSFIISCIRFKSRKLQALKL 294


>SPBC691.01 |||palmitoyltransferase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 312

 Score = 24.2 bits (50), Expect = 8.1
 Identities = 15/46 (32%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
 Frame = -1

Query: 310 SQPYHPIYLYPTWVYFTLIITVYFNFLGV-LHRRWSRLYVNIEANQ 176
           S+ YH   L  TW++  +       FLGV L R    L +NI +++
Sbjct: 181 SRTYHYRSLPGTWIFVLVFSAFGVLFLGVMLVRHTGYLLLNINSHE 226


>SPBC3E7.05c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 550

 Score = 24.2 bits (50), Expect = 8.1
 Identities = 8/16 (50%), Positives = 13/16 (81%)
 Frame = +3

Query: 249 VIINVKYTQVGYKYIG 296
           V+ NV+ + +GYKY+G
Sbjct: 105 VLYNVEQSWIGYKYLG 120


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,633,022
Number of Sequences: 5004
Number of extensions: 31219
Number of successful extensions: 76
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 75
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 76
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 144287194
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)