Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0007_I02
(415 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_01_0586 + 5202090-5202213,5202388-5202929 30 0.84
08_01_0584 + 5180531-5180651,5180816-5181354 30 0.84
08_01_0598 + 5257973-5258090,5258253-5258809 29 1.1
02_03_0284 + 17275004-17275675 29 1.1
02_03_0282 - 17264970-17265505,17265665-17265779 29 1.9
07_03_0740 - 21102015-21102287,21102402-21102555,21102647-211028... 28 3.4
02_03_0283 + 17267199-17267334,17267424-17267959 28 3.4
08_01_0590 + 5232728-5232848,5233026-5233582 27 4.5
10_08_0841 - 20948719-20948919,20949624-20950388,20950475-209510... 27 5.9
07_03_0946 - 22798055-22798742,22799746-22799810 27 5.9
>08_01_0586 + 5202090-5202213,5202388-5202929
Length = 221
Score = 29.9 bits (64), Expect = 0.84
Identities = 19/55 (34%), Positives = 30/55 (54%)
Frame = -3
Query: 413 HTFHDMSTEIWNVLEYNRYY*TVTVHPE*KTLNKFTTLPPNIFIPYLGILHINNN 249
HT H +TEI+ VLE Y VT +P+ + L+K ++F+ G++H N
Sbjct: 112 HT-HPRATEIFTVLEGTLYVGFVTSNPDNRLLSKVLN-KGDVFVFPEGLIHFQFN 164
>08_01_0584 + 5180531-5180651,5180816-5181354
Length = 219
Score = 29.9 bits (64), Expect = 0.84
Identities = 19/55 (34%), Positives = 29/55 (52%)
Frame = -3
Query: 413 HTFHDMSTEIWNVLEYNRYY*TVTVHPE*KTLNKFTTLPPNIFIPYLGILHINNN 249
HT H +TEI+ VLE Y VT +P+ K +K ++F+ G++H N
Sbjct: 112 HT-HPRATEIFTVLEGTLYVGFVTSNPDNKLFSKVLN-KGDVFVFPKGLIHFQFN 164
>08_01_0598 + 5257973-5258090,5258253-5258809
Length = 224
Score = 29.5 bits (63), Expect = 1.1
Identities = 19/55 (34%), Positives = 29/55 (52%)
Frame = -3
Query: 413 HTFHDMSTEIWNVLEYNRYY*TVTVHPE*KTLNKFTTLPPNIFIPYLGILHINNN 249
HT H +TEI VLE Y VT +P+ K +K ++F+ +G++H N
Sbjct: 109 HT-HPRATEILTVLEGTLYVGFVTSNPDNKFFSKVLN-KGDVFVFPVGLIHFQFN 161
>02_03_0284 + 17275004-17275675
Length = 223
Score = 29.5 bits (63), Expect = 1.1
Identities = 20/55 (36%), Positives = 28/55 (50%)
Frame = -3
Query: 413 HTFHDMSTEIWNVLEYNRYY*TVTVHPE*KTLNKFTTLPPNIFIPYLGILHINNN 249
HT H +TEI VLE + Y VT +PE K K ++F+ G++H N
Sbjct: 115 HT-HPRATEILTVLEGSLYVGFVTSNPENKLFTKVIN-KGDVFVFPKGLVHFQFN 167
>02_03_0282 - 17264970-17265505,17265665-17265779
Length = 216
Score = 28.7 bits (61), Expect = 1.9
Identities = 17/52 (32%), Positives = 26/52 (50%)
Frame = -3
Query: 404 HDMSTEIWNVLEYNRYY*TVTVHPE*KTLNKFTTLPPNIFIPYLGILHINNN 249
H +TEI +LE + Y VT +PE K K ++F+ G++H N
Sbjct: 110 HPRATEILTILEGSLYVGFVTSNPENKLFTKVLN-KGDVFVFPQGLIHFQFN 160
>07_03_0740 -
21102015-21102287,21102402-21102555,21102647-21102884,
21103008-21103218,21103303-21103442,21103537-21103665,
21104120-21104960
Length = 661
Score = 27.9 bits (59), Expect = 3.4
Identities = 13/48 (27%), Positives = 24/48 (50%)
Frame = +2
Query: 68 PVKETAKQKRERKQDFAKSRQQIHTIVLPTLGVIFLLICFYVYVKTRP 211
PV T ++ K + + I+LP + + L++CF V+ + RP
Sbjct: 268 PVNATPSAATPGRETKYKVPRLVLIILLPIIAAVNLVVCFCVWRRKRP 315
>02_03_0283 + 17267199-17267334,17267424-17267959
Length = 223
Score = 27.9 bits (59), Expect = 3.4
Identities = 21/57 (36%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
Frame = -3
Query: 413 HTFHDMSTEIWNVLEYNRYY*TVTVHPE*KTLNKFTTLPPNIFIPYLGILHIN-NNG 246
HT H +TEI VLE + Y V +PE K K ++F+ G++H NNG
Sbjct: 115 HT-HPRATEIPTVLEGSLYVGFVISNPENKLFTKVLN-KGDVFVFPQGLVHFQFNNG 169
>08_01_0590 + 5232728-5232848,5233026-5233582
Length = 225
Score = 27.5 bits (58), Expect = 4.5
Identities = 19/55 (34%), Positives = 27/55 (49%)
Frame = -3
Query: 413 HTFHDMSTEIWNVLEYNRYY*TVTVHPE*KTLNKFTTLPPNIFIPYLGILHINNN 249
HT H +TEI VLE Y VT +P TL ++F+ +G++H N
Sbjct: 110 HT-HPRATEILTVLEGTLYVGFVTSNPN-NTLFSKVLKKGDVFVFPVGLIHFQFN 162
>10_08_0841 -
20948719-20948919,20949624-20950388,20950475-20951023,
20951097-20951237,20951313-20951519,20951556-20951724,
20951899-20952003,20952087-20952208,20952291-20952412,
20953234-20953516
Length = 887
Score = 27.1 bits (57), Expect = 5.9
Identities = 12/36 (33%), Positives = 20/36 (55%)
Frame = +2
Query: 38 YHSKMRKLKGPVKETAKQKRERKQDFAKSRQQIHTI 145
YH K RK + AKQ++E ++ AK+ +I +
Sbjct: 380 YHQKARKSEDLFLNEAKQRKEVEETLAKANVEIQLL 415
>07_03_0946 - 22798055-22798742,22799746-22799810
Length = 250
Score = 27.1 bits (57), Expect = 5.9
Identities = 11/27 (40%), Positives = 17/27 (62%)
Frame = -1
Query: 286 LYPTWVYFTLIITVYFNFLGVLHRRWS 206
L+P W+ + +TVYF V+ R+WS
Sbjct: 142 LFPGWLLLVIFMTVYF---FVVRRKWS 165
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,180,341
Number of Sequences: 37544
Number of extensions: 156102
Number of successful extensions: 346
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 345
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 346
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 742607976
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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