Samia BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0007_I02
         (415 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC031564-1|AAH31564.1|   59|Homo sapiens C11orf75 protein protein.     71   2e-12
AF197137-1|AAF86046.1|   59|Homo sapiens FN5 protein protein.          71   2e-12
AJ854065-1|CAH69441.1|   89|Homo sapiens MHC class II antigen pr...    29   4.6  
BC046362-1|AAH46362.1|  103|Homo sapiens TMEM37 protein protein.       29   6.1  
AF361356-1|AAL50051.1|  192|Homo sapiens voltage-dependent calci...    29   6.1  
AC013275-1|AAY14740.1|  103|Homo sapiens unknown protein.              29   6.1  
AF479569-1|AAM09472.1|   89|Homo sapiens MHC class II antigen pr...    29   8.1  

>BC031564-1|AAH31564.1|   59|Homo sapiens C11orf75 protein protein.
          Length = 59

 Score = 70.9 bits (166), Expect = 2e-12
 Identities = 35/55 (63%), Positives = 43/55 (78%), Gaps = 1/55 (1%)
 Frame = +2

Query: 50  MRKLKG-PVKETAKQKRERKQDFAKSRQQIHTIVLPTLGVIFLLICFYVYVKTRP 211
           MR+LKG P KET+K K+ERKQ   ++RQQI T+VLPTL V+ LLI  +VYV TRP
Sbjct: 1   MRQLKGKPKKETSKDKKERKQAMQEARQQITTVVLPTLAVVVLLIVVFVYVATRP 55


>AF197137-1|AAF86046.1|   59|Homo sapiens FN5 protein protein.
          Length = 59

 Score = 70.9 bits (166), Expect = 2e-12
 Identities = 35/55 (63%), Positives = 43/55 (78%), Gaps = 1/55 (1%)
 Frame = +2

Query: 50  MRKLKG-PVKETAKQKRERKQDFAKSRQQIHTIVLPTLGVIFLLICFYVYVKTRP 211
           MR+LKG P KET+K K+ERKQ   ++RQQI T+VLPTL V+ LLI  +VYV TRP
Sbjct: 1   MRQLKGKPKKETSKDKKERKQAMQEARQQITTVVLPTLAVVVLLIVVFVYVATRP 55


>AJ854065-1|CAH69441.1|   89|Homo sapiens MHC class II antigen
           protein.
          Length = 89

 Score = 29.5 bits (63), Expect = 4.6
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = -1

Query: 211 WSRLYVNIEANQQEYNT*CRENYSVNLLTTFRK 113
           W+R    +E  + E +T CR NY + L TT ++
Sbjct: 56  WNRQKEVLERTRAELDTVCRHNYQLELRTTLQR 88


>BC046362-1|AAH46362.1|  103|Homo sapiens TMEM37 protein protein.
          Length = 103

 Score = 29.1 bits (62), Expect = 6.1
 Identities = 13/38 (34%), Positives = 23/38 (60%)
 Frame = +3

Query: 237 LKYTVIINVKYTQVGYKYIGW*GCEFI*SFLLWVNCYS 350
           L + +++  + T +G+  + W  CEF  SFLL++N  S
Sbjct: 56  LGFVILLRNQVTLIGFTLMFW--CEFTASFLLFLNAIS 91


>AF361356-1|AAL50051.1|  192|Homo sapiens voltage-dependent calcium
           channel gamma subunit-like protein protein.
          Length = 192

 Score = 29.1 bits (62), Expect = 6.1
 Identities = 13/38 (34%), Positives = 23/38 (60%)
 Frame = +3

Query: 237 LKYTVIINVKYTQVGYKYIGW*GCEFI*SFLLWVNCYS 350
           L + +++  + T +G+  + W  CEF  SFLL++N  S
Sbjct: 145 LGFVILLRNQVTLIGFTLMFW--CEFTASFLLFLNAIS 180


>AC013275-1|AAY14740.1|  103|Homo sapiens unknown protein.
          Length = 103

 Score = 29.1 bits (62), Expect = 6.1
 Identities = 13/38 (34%), Positives = 23/38 (60%)
 Frame = +3

Query: 237 LKYTVIINVKYTQVGYKYIGW*GCEFI*SFLLWVNCYS 350
           L + +++  + T +G+  + W  CEF  SFLL++N  S
Sbjct: 56  LGFVILLRNQVTLIGFTLMFW--CEFTASFLLFLNAIS 91


>AF479569-1|AAM09472.1|   89|Homo sapiens MHC class II antigen
           protein.
          Length = 89

 Score = 28.7 bits (61), Expect = 8.1
 Identities = 11/33 (33%), Positives = 19/33 (57%)
 Frame = -1

Query: 211 WSRLYVNIEANQQEYNT*CRENYSVNLLTTFRK 113
           W+    ++E  + E +T CR NY + L TT ++
Sbjct: 56  WNSQKEDLERTRAELDTVCRHNYQLELRTTLQR 88


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 53,783,052
Number of Sequences: 237096
Number of extensions: 1079843
Number of successful extensions: 5704
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 5662
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5704
length of database: 76,859,062
effective HSP length: 83
effective length of database: 57,180,094
effective search space used: 3087725076
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)