Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0007_I02
         (415 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF098504-3|AAK73898.4| 2395|Caenorhabditis elegans Leucine-rich ...    29   1.0  
AB297384-1|BAF48647.1| 2393|Caenorhabditis elegans PARK8-related...    29   1.0  
AL031632-6|CAA21008.1|  338|Caenorhabditis elegans Hypothetical ...    28   3.1  
U67953-5|AAL13330.2|  287|Caenorhabditis elegans Male abnormal p...    27   7.1  
AY742796-1|AAW59416.1|  287|Caenorhabditis elegans MAB-7 protein.      27   7.1  
Z81057-5|CAB02917.2|  846|Caenorhabditis elegans Hypothetical pr...    26   9.4  
U50135-6|AAN63429.1|  925|Caenorhabditis elegans Hypothetical pr...    26   9.4  

>AF098504-3|AAK73898.4| 2395|Caenorhabditis elegans Leucine-rich
            repeats, ras-likedomain, kinase protein 1 protein.
          Length = 2395

 Score = 29.5 bits (63), Expect = 1.0
 Identities = 18/55 (32%), Positives = 31/55 (56%)
 Frame = +2

Query: 59   LKGPVKETAKQKRERKQDFAKSRQQIHTIVLPTLGVIFLLICFYVYVKTRPASMQ 223
            LK P  E+ +  +ER  D A+     H ++LPT  +  L+ C+  + ++RP+S Q
Sbjct: 1931 LKFPF-ESEEHVKERMLDGARPVLLPHELLLPTPMLDLLVHCWSAHPESRPSSSQ 1984


>AB297384-1|BAF48647.1| 2393|Caenorhabditis elegans PARK8-related
            kinase protein.
          Length = 2393

 Score = 29.5 bits (63), Expect = 1.0
 Identities = 18/55 (32%), Positives = 31/55 (56%)
 Frame = +2

Query: 59   LKGPVKETAKQKRERKQDFAKSRQQIHTIVLPTLGVIFLLICFYVYVKTRPASMQ 223
            LK P  E+ +  +ER  D A+     H ++LPT  +  L+ C+  + ++RP+S Q
Sbjct: 1929 LKFPF-ESEEHVKERMLDGARPVLLPHELLLPTPMLDLLVHCWSAHPESRPSSSQ 1982


>AL031632-6|CAA21008.1|  338|Caenorhabditis elegans Hypothetical
           protein Y32B12B.6 protein.
          Length = 338

 Score = 27.9 bits (59), Expect = 3.1
 Identities = 13/38 (34%), Positives = 21/38 (55%)
 Frame = -1

Query: 352 KL*QFTQSKKL*INSQPYHPIYLYPTWVYFTLIITVYF 239
           K+ Q  + +   +  Q YH +  + +W Y TL+ TVYF
Sbjct: 121 KIEQMLREETSFVARQKYHEMN-WDSWYYITLVSTVYF 157


>U67953-5|AAL13330.2|  287|Caenorhabditis elegans Male abnormal
           protein 7 protein.
          Length = 287

 Score = 26.6 bits (56), Expect = 7.1
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = -3

Query: 326 KTLNKFTTLPPNIFIPYLGILHINNNGI 243
           + ++ F TL PN F P + IL  +N G+
Sbjct: 186 RVVHGFITLKPNSFPPEVAILSTSNEGL 213


>AY742796-1|AAW59416.1|  287|Caenorhabditis elegans MAB-7 protein.
          Length = 287

 Score = 26.6 bits (56), Expect = 7.1
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = -3

Query: 326 KTLNKFTTLPPNIFIPYLGILHINNNGI 243
           + ++ F TL PN F P + IL  +N G+
Sbjct: 186 RVVHGFITLKPNSFPPEVAILSTSNEGL 213


>Z81057-5|CAB02917.2|  846|Caenorhabditis elegans Hypothetical
           protein F10D11.6 protein.
          Length = 846

 Score = 26.2 bits (55), Expect = 9.4
 Identities = 14/44 (31%), Positives = 23/44 (52%)
 Frame = +2

Query: 41  HSKMRKLKGPVKETAKQKRERKQDFAKSRQQIHTIVLPTLGVIF 172
           H+    +     ET K + +RK+D ++ R+Q  T  L  LG+ F
Sbjct: 604 HTSSPAIVAATNETTKLRTKRKRD-SRRRRQEDTAGLADLGICF 646


>U50135-6|AAN63429.1|  925|Caenorhabditis elegans Hypothetical
           protein C52E12.1 protein.
          Length = 925

 Score = 26.2 bits (55), Expect = 9.4
 Identities = 10/21 (47%), Positives = 16/21 (76%)
 Frame = +2

Query: 86  KQKRERKQDFAKSRQQIHTIV 148
           K+KRERK+D+A+ + +I   V
Sbjct: 673 KEKRERKEDWARKKAEIQARV 693


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,739,117
Number of Sequences: 27780
Number of extensions: 167002
Number of successful extensions: 434
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 431
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 434
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 673122114
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)