Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0007_I01
(370 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC1683.04 |||glycosyl hydrolase family 3|Schizosaccharomyces p... 28 0.40
SPAC2F7.08c |snf5||chromatin remodeling complex subunit Snf5 |Sc... 26 1.6
SPAC13G7.06 |met16||phosphoadenosine phosphosulfate reductase|Sc... 25 2.8
SPBC21B10.06c |||sequence orphan|Schizosaccharomyces pombe|chr 2... 25 4.9
SPAC328.01c ||SPAC3A11.01|karyopherin|Schizosaccharomyces pombe|... 25 4.9
SPBPJ4664.06 |gpt1||UDP-glucose-glycoprotein glucosyltransferase... 24 6.5
SPAC23C11.06c |||hydrolase |Schizosaccharomyces pombe|chr 1|||Ma... 24 6.5
SPBC530.06c |||translation initiation factor eIF3 alpha subunit ... 24 6.5
SPAC4F10.16c |||P-type ATPase |Schizosaccharomyces pombe|chr 1||... 24 6.5
SPAC3A11.05c |kms1||meiotic spindle pole body protein Kms1|Schiz... 24 8.6
SPAC13G7.13c |msa1|SPAC6C3.01c|RNA-binding protein Msa1|Schizosa... 24 8.6
>SPBC1683.04 |||glycosyl hydrolase family 3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 832
Score = 28.3 bits (60), Expect = 0.40
Identities = 12/20 (60%), Positives = 12/20 (60%)
Frame = -2
Query: 168 ILGESFLNSDLITCFKCGTA 109
I G SF NS CF CGTA
Sbjct: 50 IRGTSFFNSSPSACFPCGTA 69
>SPAC2F7.08c |snf5||chromatin remodeling complex subunit Snf5
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 632
Score = 26.2 bits (55), Expect = 1.6
Identities = 8/21 (38%), Positives = 14/21 (66%)
Frame = +3
Query: 288 DPFTWPWYSTCVSNNEISKQV 350
D FTW Y C+S ++ ++Q+
Sbjct: 157 DSFTWNLYDKCISLDQFAEQI 177
>SPAC13G7.06 |met16||phosphoadenosine phosphosulfate
reductase|Schizosaccharomyces pombe|chr 1|||Manual
Length = 266
Score = 25.4 bits (53), Expect = 2.8
Identities = 10/29 (34%), Positives = 17/29 (58%)
Frame = +1
Query: 16 IMNKMLSNRFPYIVVNNKNYQKICKIHST 102
+ N +++N PY + NK Y+ + HST
Sbjct: 191 VHNYIITNNVPYNELLNKGYRSVGDWHST 219
>SPBC21B10.06c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 470
Score = 24.6 bits (51), Expect = 4.9
Identities = 17/74 (22%), Positives = 36/74 (48%)
Frame = +1
Query: 7 GITIMNKMLSNRFPYIVVNNKNYQKICKIHSTTFSSTAFKAGDKIRIQKTLTQNDLDAFS 186
G++ +NK ++ + +N+ Y +IC++ + + A ++ R+ L ND F
Sbjct: 169 GLSSLNKFVNLLHDFETTSNRVYSQICELEANS-------AANRSRLMDFLPANDPLLF- 220
Query: 187 NLTGDHNYLHHNNG 228
NLT + + +G
Sbjct: 221 NLTEQNTLSYELSG 234
>SPAC328.01c ||SPAC3A11.01|karyopherin|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1234
Score = 24.6 bits (51), Expect = 4.9
Identities = 11/32 (34%), Positives = 15/32 (46%)
Frame = -1
Query: 115 YC*MLSSEFCRSSDNSYCSPQYKETCLTAFYS 20
YC + F R +C P + LTAF+S
Sbjct: 876 YCYYAIASFMRLGQAFFCVPGLSKQFLTAFFS 907
>SPBPJ4664.06 |gpt1||UDP-glucose-glycoprotein glucosyltransferase
Gpt1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1448
Score = 24.2 bits (50), Expect = 6.5
Identities = 14/32 (43%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
Frame = +1
Query: 127 AGDKIRIQKTLTQNDLDAFSNLTGD-HNYLHH 219
AGD +R Q L D ++ SNL D N+L H
Sbjct: 1331 AGDLLRRQYQLLSADPNSLSNLDQDLPNHLQH 1362
>SPAC23C11.06c |||hydrolase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 535
Score = 24.2 bits (50), Expect = 6.5
Identities = 6/8 (75%), Positives = 6/8 (75%)
Frame = +3
Query: 285 WDPFTWPW 308
W P TWPW
Sbjct: 185 WSPSTWPW 192
>SPBC530.06c |||translation initiation factor eIF3 alpha subunit
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1173
Score = 24.2 bits (50), Expect = 6.5
Identities = 14/38 (36%), Positives = 21/38 (55%), Gaps = 2/38 (5%)
Frame = +1
Query: 61 NNKNYQKICKIHSTTFSSTAF--KAGDKIRIQKTLTQN 168
+NK+ KIC+ H+ ST F K G+K + +QN
Sbjct: 869 SNKSDDKICEEHAVPNGSTKFTGKKGNKKKRNLGKSQN 906
>SPAC4F10.16c |||P-type ATPase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1367
Score = 24.2 bits (50), Expect = 6.5
Identities = 10/29 (34%), Positives = 15/29 (51%)
Frame = -2
Query: 177 IKVILGESFLNSDLITCFKCGTAECCRVN 91
+ +L E L+ C +C T CCRV+
Sbjct: 983 LNFVLSEQVSFLFLMLCKQCKTVLCCRVS 1011
>SPAC3A11.05c |kms1||meiotic spindle pole body protein
Kms1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 607
Score = 23.8 bits (49), Expect = 8.6
Identities = 14/54 (25%), Positives = 25/54 (46%), Gaps = 1/54 (1%)
Frame = +1
Query: 73 YQKICKIHSTTFSSTAFKAGDKIR-IQKTLTQNDLDAFSNLTGDHNYLHHNNGN 231
+QK C + ++ D R + K LT+N+ D+F+N + N+ N
Sbjct: 49 FQKQCTLEFVRQNADLSITKDNFRDVYKKLTENEDDSFANQAEKPSMEQQNSKN 102
>SPAC13G7.13c |msa1|SPAC6C3.01c|RNA-binding protein
Msa1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 533
Score = 23.8 bits (49), Expect = 8.6
Identities = 9/16 (56%), Positives = 12/16 (75%)
Frame = +2
Query: 116 PHLKQVIRSEFRKLSP 163
PH K+ +R EFR+L P
Sbjct: 428 PHQKKPLRVEFRQLRP 443
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,556,622
Number of Sequences: 5004
Number of extensions: 29234
Number of successful extensions: 72
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 72
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 72
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 116121426
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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