Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0007_I01
         (370 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_01_0579 - 5196888-5196970,5197063-5197621,5197704-5197786,519...    33   0.093
03_02_0142 + 5877480-5879663,5879783-5879898,5880749-5882419,588...    27   3.5  
01_03_0076 - 12241408-12241545,12241719-12241790,12242173-122422...    27   3.5  
08_01_0075 - 533839-534642,534653-534706,534890-534961,535377-53...    27   6.1  
11_01_0220 + 1717861-1717979,1718149-1718281,1718544-1718723,171...    26   8.1  
10_08_0060 + 14533313-14534385,14534601-14534613                       26   8.1  
07_01_1143 - 10711023-10711884,10713603-10713826,10714253-107145...    26   8.1  
06_01_0493 - 3536207-3537056,3537603-3537826,3538234-3538503,353...    26   8.1  

>05_01_0579 -
           5196888-5196970,5197063-5197621,5197704-5197786,
           5199165-5199279,5199376-5199473,5200136-5200183,
           5200313-5200415,5201003-5201119,5201254-5201430,
           5202563-5202593,5203492-5203604,5203824-5204036
          Length = 579

 Score = 32.7 bits (71), Expect = 0.093
 Identities = 12/36 (33%), Positives = 23/36 (63%)
 Frame = +1

Query: 109 SSTAFKAGDKIRIQKTLTQNDLDAFSNLTGDHNYLH 216
           SS   K GD +R ++  T  +++A++ ++GD N +H
Sbjct: 28  SSLVLKVGDTLRERRRFTDGEVEAYAAVSGDRNPVH 63


>03_02_0142 +
           5877480-5879663,5879783-5879898,5880749-5882419,
           5882570-5882618,5882703-5882941,5883073-5883174,
           5883634-5883862
          Length = 1529

 Score = 27.5 bits (58), Expect = 3.5
 Identities = 13/38 (34%), Positives = 19/38 (50%)
 Frame = +1

Query: 154 TLTQNDLDAFSNLTGDHNYLHHNNGNMRPIVHGALLNG 267
           TL Q+   +    TG+H   +HN G   P + G+L  G
Sbjct: 573 TLNQDQYQSIIGRTGEHVGQNHNMGRKGPEITGSLGRG 610


>01_03_0076 -
           12241408-12241545,12241719-12241790,12242173-12242289,
           12243307-12245127,12245361-12245810
          Length = 865

 Score = 27.5 bits (58), Expect = 3.5
 Identities = 13/26 (50%), Positives = 16/26 (61%), Gaps = 1/26 (3%)
 Frame = -3

Query: 317 STVPGPGKWV-PMRPATNPFRRAPCT 243
           ST PGP  +  P+RPA  PFR  P +
Sbjct: 55  STPPGPPVFSSPLRPAAVPFRATPAS 80


>08_01_0075 -
           533839-534642,534653-534706,534890-534961,535377-535379
          Length = 310

 Score = 26.6 bits (56), Expect = 6.1
 Identities = 13/31 (41%), Positives = 21/31 (67%)
 Frame = -3

Query: 200 SPVRFENASRSFWVRVF*ILILSPALNAVLL 108
           S +R +++SRS WVR   I+I+  A+  +LL
Sbjct: 264 SRLRRQHSSRSLWVRHVKIIIVVDAIICILL 294


>11_01_0220 +
           1717861-1717979,1718149-1718281,1718544-1718723,
           1719046-1719126,1719259-1719422,1719518-1719654,
           1719900-1720015,1720134-1720367
          Length = 387

 Score = 26.2 bits (55), Expect = 8.1
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = +1

Query: 205 NYLHHNNGNMRPIVHGA 255
           NY HHN GN + I H +
Sbjct: 40  NYKHHNGGNNQTIFHSS 56


>10_08_0060 + 14533313-14534385,14534601-14534613
          Length = 361

 Score = 26.2 bits (55), Expect = 8.1
 Identities = 14/46 (30%), Positives = 22/46 (47%)
 Frame = -1

Query: 304 GQVNGSQ*GRRPIHSEGLRVQ*VSYYHYCDVNSYDHQLDLKTHQGH 167
           G  NG    R    S  + V  VS  H+ +++ Y H  ++ +H GH
Sbjct: 11  GNNNGGIPSRSSSSSSAIVVSKVSGCHFLNIDGYSHTKEMLSH-GH 55


>07_01_1143 -
           10711023-10711884,10713603-10713826,10714253-10714522,
           10715071-10715175
          Length = 486

 Score = 26.2 bits (55), Expect = 8.1
 Identities = 12/37 (32%), Positives = 19/37 (51%)
 Frame = +1

Query: 46  PYIVVNNKNYQKICKIHSTTFSSTAFKAGDKIRIQKT 156
           PY+ +    Y K CKI +  F+   ++ G   R +KT
Sbjct: 31  PYVRMLRAEYDKECKICARPFTVFRWRPGRDARYKKT 67


>06_01_0493 -
           3536207-3537056,3537603-3537826,3538234-3538503,
           3539042-3539146
          Length = 482

 Score = 26.2 bits (55), Expect = 8.1
 Identities = 12/37 (32%), Positives = 19/37 (51%)
 Frame = +1

Query: 46  PYIVVNNKNYQKICKIHSTTFSSTAFKAGDKIRIQKT 156
           PY+ +    Y K CKI +  F+   ++ G   R +KT
Sbjct: 31  PYVRMLRAEYDKECKICARPFTVFRWRPGRDARYKKT 67


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,522,747
Number of Sequences: 37544
Number of extensions: 173801
Number of successful extensions: 530
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 520
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 530
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 576724416
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)