Samia BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0007_I01
         (370 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X71488-1|CAA50589.1|  264|Homo sapiens Brn-3b protein.                 30   2.7  
BC067107-1|AAH67107.1|  814|Homo sapiens putative neuronal cell ...    28   8.2  
BC042054-1|AAH42054.1|  814|Homo sapiens putative neuronal cell ...    28   8.2  

>X71488-1|CAA50589.1|  264|Homo sapiens Brn-3b protein.
          Length = 264

 Score = 29.9 bits (64), Expect = 2.7
 Identities = 18/56 (32%), Positives = 28/56 (50%), Gaps = 2/56 (3%)
 Frame = +1

Query: 184 SNLTGDHNYLHHNNGNMRP--IVHGALLNGLVAGLIGTHLPGPGTVLVSQTMKFPN 345
           S L G H++ HH++ + +P   + G LL  L  GL    + GP   +VS     P+
Sbjct: 21  SALAGTHHHHHHHHHHHQPHQALEGELLEHLSPGLALGAMAGPDGAVVSTPAHAPH 76


>BC067107-1|AAH67107.1|  814|Homo sapiens putative neuronal cell
           adhesion molecule protein.
          Length = 814

 Score = 28.3 bits (60), Expect = 8.2
 Identities = 13/33 (39%), Positives = 20/33 (60%)
 Frame = +1

Query: 226 GNMRPIVHGALLNGLVAGLIGTHLPGPGTVLVS 324
           GN RPIV  + L+G   G+ G  + G G +++S
Sbjct: 263 GNPRPIVSWSRLDGRPIGVEGIQVLGTGNLIIS 295


>BC042054-1|AAH42054.1|  814|Homo sapiens putative neuronal cell
           adhesion molecule protein.
          Length = 814

 Score = 28.3 bits (60), Expect = 8.2
 Identities = 13/33 (39%), Positives = 20/33 (60%)
 Frame = +1

Query: 226 GNMRPIVHGALLNGLVAGLIGTHLPGPGTVLVS 324
           GN RPIV  + L+G   G+ G  + G G +++S
Sbjct: 263 GNPRPIVSWSRLDGRPIGVEGIQVLGTGNLIIS 295


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 54,141,099
Number of Sequences: 237096
Number of extensions: 1025015
Number of successful extensions: 2110
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2075
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2110
length of database: 76,859,062
effective HSP length: 81
effective length of database: 57,654,286
effective search space used: 2363825726
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)